Programa de Pós Graduação em Bioinformática

2024

1.	ABRAHÃO, MARIANA ; Buckeridge, Marcos S. ; MISSAGIA, CAIO CÉSAR CORRÊA ; DE SOUZA, AMANDA P. ; Alves, Maria Alice S.. Influence of crop size and sugar content on bird fruit feeding patterns on two sympatric Miconia (Melastomataceae) species on a continental island in the Brazilian Atlantic Forest domain. Ornithology Research. v. 32, p. 310, 2024. Qualis: Não identificado (ORNITHOLOGY RESEARCH)
2.	ALABI, AYODELE ; KOKOU, KOSSIWA ; MAHMOUDOU, SAIDOU ; KAVISHNA, RANMALI ; NAKKA, SRAVYA S. ; ROTHENBERGER, SYLVIA ; MUSANGOMUNEI, FUNGAI P. ; OLUBIYI, BISOLA F. ; BIE-ONDO, JUSTE C. ; KABWENDE, ANITA L. ; VELAVAN, THIRUMALAISAMY P. ; MEDAGLINI, DONATA ; Nakaya, Helder I. ; ENGLER, OLIVIER ; HARANDI, ALI M. ; SIEGRIST, CLAIRE-ANNE ; KREMSNER, PETER G. ; AGNANDJI, SELIDJI T.. Replication, safety and immunogenicity of the vectored Ebola vaccine rVSV--G-ZEBOV-GP in a sub-Saharan African paediatric population: A randomised controlled, open-label trial in children aged 1-12 years living in Lambaréné, Gabon. JOURNAL OF INFECTION. v. 89, p. 106237, 2024. Qualis: A2 (THE JOURNAL OF INFECTION)
3.	AMORIM, VITOR MARTINS DE FREITAS ; SOARES, EDUARDO PEREIRA ; FERRARI, ANIELLE SALVIANO DE ALMEIDA ; MERIGHI, DAVI GABRIEL SALUSTIANO ; de SOUZA, Robson Francisco ; GUZZO, CRISTIANE RODRIGUES ; SOUZA, ANACLETO SILVA DE. 3-Chymotrypsin-like Protease (3CLpro) of SARS-CoV-2: Validation as a Molecular Target, Proposal of a Novel Catalytic Mechanism, and Inhibitors in Preclinical and Clinical Trials. Viruses-Basel. v. 16, p. 844, 2024. Qualis: Não identificado (VIRUSES-BASEL)
4.	BARREIRO, RODRIGO ARAUJO SEQUEIRA ; DE ALMEIDA, TATIANA FERREIRA ; GOMES, CATARINA DOS SANTOS ; MONFARDINI, FREDERICO ; DE FARIAS, ALLYSSON ALLAN ; TUNES, GABRIELA CHIUFFA ; DE SOUZA, GABRIEL MESQUITA ; DUIM, ETIENNE ; DE SÁ CORREIA, JAQUELINE ; CAMPOS COELHO, ANTONIO VICTOR ; CARACIOLO, MARCEL PINHEIRO ; OLIVEIRA DUARTE, YEDA APARECIDA ; ZATZ, MAYANA ; Amaro, Edson ; OLIVEIRA, JOÃO BOSCO ; BITARELLO, BÁRBARA DOMINGUES ; BRENTANI, HELENA ; NASLAVSKY, MICHEL SATYA. Assessing the Risk Stratification of Breast Cancer Polygenic Risk Scores in a Brazilian Cohort. JOURNAL OF MOLECULAR DIAGNOSTICS. v. 26, p. 825-831, 2024. Qualis: Não identificado (JOURNAL OF MOLECULAR DIAGNOSTICS)
5.	BATISTA, BIANCA B. ; DE LIMA, VINICIUS M. ; PICINATO, BEATRIZ A. ; Koide, Tie ; DA SILVA NETO, JOSÉ F.. A quorum-sensing regulatory cascade for siderophore-mediated iron homeostasis in Chromobacterium violaceum. mSystems. v. 9, p. e0139723, 2024. Qualis: A1
6.	BLUME, M. ; WALDMAN, E. A. ; LINDOSO, A. A. B. P. ; RUJULA, M. J. P. ; ORLANDI, G. M. ; OLIVEIRA, M. L. V. ; Guimaraes, A.M.S.. The impact of the SARS-CoV-2 pandemic on tuberculosis notifications and deaths in the state of São Paulo, Brazil: a cross-sectional study. Lancet Regional Health-Americas. v. 35, p. accepted, 2024.Qualis: Não identificado (LANCET REGIONAL HEALTH-AMERICAS)
7.	BORDINI, DANIELA ; MOYA, ANA CLÁUDIA ; ASEVEDO, GRACCIELLE RODRIGUES DA CUNHA ; PAULA, CRISTIANE SILVESTRE ; BRUNONI, DÉCIO ; BRENTANI, HELENA ; CAETANO, SHEILA CAVALCANTE ; MARI, JAIR DE JESUS ; BAGAIOLO, LEILA. Exploring the Acquisition of Social Communication Skills in Children with Autism: Preliminary Findings from Applied Behavior Analysis (ABA), Parent Training, and Video Modeling. BRAIN SCIENCES. v. 14, p. 172, 2024. Qualis: Não identificado (BRAIN SCIENCES)
8.	Buckeridge, Marcos S.; PHILIPPI JÚNIOR, ARLINDO. Como ser um eleitor exigente e um candidato ideal. ESTUDOS AVANÇADOS (ONLINE). v. 38, p. 355-366, 2024. Qualis: A1
9.	CARHUARICRA-HUAMAN, DENNIS ; GONZALEZ, IRYS H.L. ; RAMOS, PATRICIA L. ; da Silva, Aline M. ; SETUBAL, JOAO C.. Analysis of twelve genomes of the bacterium from brown-throated sloths ( ), the first from a non-human host. PeerJ. v. 12, p. e17206, 2024. Qualis: A2
10.	Carhuaricra-Huaman, Dennis ; GONZALEZ, IRYS H.L. ; RAMOS, PATRICIA L. ; DA SILVA, ALINE M. ; Setubal, Joao C.. Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths ( Bradypus variegatus ), the first from a non-human host. PeerJ. v. 12, p. e17206, 2024. Qualis: A2
11.	CARVALHO, SYLVESTRE A. ; LAZARO, LIRA L. B. ; YOUNG, ANDREA F. ; COELHO, ROONEY R. A. ; ORTEGA, FÁBIO J. M. ; HECKSHER, CAROLINA B. M. C. ; CARDOSO, JOSÉ R. ; FERREIRA, JOÃO S. W. ; JACOBI, PEDRO R. ; JUNIOR, ARLINDO P. ; Buckeridge, Marcos S.. Assessing the Alignment of Brazilian Local Government Plans with the United Nations? Sustainable Development Goals. Sustainability. v. 16, p. 10672, 2024. Qualis: A1
12.	CATARUCI, AMALIA C. S. ; KAWAMOTO, DIONE ; SHIMABUKURO, NATALI ; ISHIKAWA, KARIN H. ; ANDO-SUGUIMOTO, ELLEN S. ; RIBEIRO, RODOLFO A. ; NICASTRO, GIANLUCCA G. ; ALBUQUERQUE-SOUZA, EMANUEL ; de Souza, Robson F. ; MAYER, MARCIA P. A.. Oral Administration of Lactobacillus acidophilus LA5 Prevents Alveolar Bone Loss and Alters Oral and Gut Microbiomes in a Murine Periodontitis Experimental Model. Microorganisms. v. 12, p. 1057, 2024. Qualis: B1
13.	CONTATO, ALEX GRAÇA ; BORELLI, TIAGO CABRAL ; BUCKERIDGE, MARCOS SILVEIRA ; ROGERS, JANET ; HARTSON, STEVEN ; PRADE, ROLF ALEXANDER ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Secretome Analysis of Thermothelomyces thermophilus LMBC 162 Cultivated with Tamarindus indica Seeds Reveals CAZymes for Degradation of Lignocellulosic Biomass. JOURNAL OF FUNGI. v. 10, p. 121, 2024. Qualis: C
14.	CONTATO, ALEX GRAÇA ; BORELLI, TIAGO CABRAL ; DE CARVALHO, ANA KARINE FURTADO ; BENTO, HEITOR BUZETTI SIMÕES ; BUCKERIDGE, MARCOS SILVEIRA ; ROGERS, JANET ; HARTSON, STEVEN ; PRADE, ROLF ALEXANDER ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Comparative Analysis of CAZymes from Trichoderma longibrachiatum LMBC 172 Cultured with Three Different Carbon Sources: Sugarcane Bagasse, Tamarind Seeds, and Hemicellulose Simulation. Clean Technologies. v. 6, p. 994-1010, 2024. Qualis: Não identificado (CLEAN TECHNOLOGIES)
15.	COSTA-GOUVEA, TIFFANY B. L. ; FRANÇOSO, KATIA S. ; MARQUES, RODOLFO F. ; GIMENEZ, ALBA MARINA ; FARIA, ANA C. M. ; CARISTE, LEONARDO M. ; DOMINGUEZ, MARIANA R. ; VASCONCELOS, JOSÉ RONNIE C. ; Nakaya, Helder I. ; SILVEIRA, EDUARDO L. V. ; SOARES, IRENE S.. Poly I:C elicits broader and stronger humoral and cellular responses to a Plasmodium vivax circumsporozoite protein malaria vaccine than Alhydrogel in mice. Frontiers in Immunology. v. 15, p. 1, 2024. Qualis: A1
16.	DAVID, EBUKA E. ; IGWENYI, IKECHUKU O. ; IROHA, IFEANYICHUKWU R. ; MARTINS, LAYLA F. ; UCEDA-CAMPOS, GUILLERMO ; da Silva, Aline M.. Bacillus cereus containing nheA, hblC and cytk enterotoxin genes is associated with acute childhood gastroenteritis in Nigeria. Indian Journal of Medical Microbiology. v. 51, p. 100666, 2024. Qualis: Não identificado (INDIAN JOURNAL OF MEDICAL MICROBIOLOGY)
17.	DE ANDRADES, DIANDRA ; ALNOCH, ROBSON C. ; ALVES, GABRIELA S. ; SALGADO, JOSE C. S. ; ALMEIDA, PAULA Z. ; BERTO, GABRIELA LEILA ; SEGATO, FERNANDO ; WARD, RICHARD J. ; Buckeridge, Marcos S. ; Polizeli, Maria de Lourdes T. M.. Recombinant GH3 β-glucosidase stimulated by xylose and tolerant to furfural and 5-hydroxymethylfurfural obtained from Aspergillus nidulans. Bioresources And Bioprocessing. v. 11, p. 77, 2024. Qualis: Não identificado (BIORESOURCES AND BIOPROCESSING)
18.	DE MELLO, F. N. ; TAHIRA, A. C. ; BERZOTI-COELHO, M. G. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. The CUT&RUN greenlist: genomic regions of consistent noise are effective normalizing factors for quantitative epigenome mapping. BRIEFINGS IN BIOINFORMATICS. v. 25, p. bbad358, 2024. Qualis: A1
19.	DE OLIVEIRA, LAUANA PEREIRA ; DE JESUS PEREIRA, JOÃO PEDRO ; NAVARRO, BRUNO VIANA ; MARTINS, MARINA C. M. ; RIAÑO-PACHÓN, DIEGO MAURICIO ; BUCKERIDGE, MARCOS SILVEIRA. Bioinformatic insights into sugar signaling pathways in sugarcane growth. Scientific Reports. v. 14, p. 24935, 2024. Qualis: A2
20.	DE PAULA OLIVEIRA, INAEH ; DA SILVA OLIVEIRA, VICTÓRIA REGINA ; ALONSO'MATIELO, HELOÍSA ; ENG, BEATRIZ MAGALHÃES ; DE ANDRADE, DANIEL CIAMPI ; TEIXEIRA, MANOEL JACOBSEN ; CALSAVERINI, MILENA CRISTINA DIAS ; DE QUADROS RIBEIRO, FERNANDO ; ARAÚJO, JOSÉ DENEY ALVES ; NAKAYA, HELDER TAKASHI IMOTO ; OTOCH, JOSÉ PINHATA ; DALE, CAMILA SQUARZONI. Phenotypical characterization of exteroceptive sensation and pain symptoms on diabetic patients. Pain Practice. v. 1, p. 1, 2024. Qualis: B4 (IN PRACTICE)
21.	DIAS, HENRIQUE MOURA ; DE TOLEDO, NAIARA ALMEIDA ; MURAL, RAVI V ; SCHNABLE, JAMES C ; Van Sluys, Marie-Anne. Gene Evolutionary Trends: A Comprehensive Plant-Focused Assessment via Data Mining and Large-Scale Analysis. Genome Biology and Evolution. v. 16, p. evae212, 2024. Qualis: A1
22.	DIAS, THOMAZ LÜSCHER ; MAMEDE, IZABELA ; DE TOLEDO, NAYARA EVELIN ; QUEIROZ, LÚCIO REZENDE ; CASTRO, ÍCARO ; POLIDORO, RAFAEL ; DEL-BEM, LUIZ EDUARDO ; NAKAYA, HELDER ; FRANCO, GLÓRIA REGINA. SARS-CoV-2 Selectively Induces the Expression of Unproductive Splicing Isoforms of Interferon, Class I MHC, and Splicing Machinery Genes. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 25, p. 5671-1, 2024. Qualis: A2
23.	DOS SANTOS, BENEDITO M. ; PECENIN, MATEUS F. ; BORGES-PEREIRA, LUCAS ; SPRINGER, ERIC ; PRZYBORSKI, JUDE M. ; MARTINS-JR, DAVID C. ; HASHIMOTO, RONALDO F. ; GARCIA, CÉLIA R.S.. The genetically encoded calcium indicator GCaMP3 reveals spontaneous calcium oscillations at asexual stages of the human malaria parasite Plasmodium falciparum. MOLECULAR AND BIOCHEMICAL PARASITOLOGY. v. 260, p. 111650, 2024. Qualis: A4
24.	DOS SANTOS, NAARA M. ; PICINATO, BEATRIZ A. ; SANTOS, LUCAS S. ; DE ARAÚJO, HUGO L. ; BALAN, ANDREA ; Koide, Tie ; MARQUES, MARILIS V.. Mapping the IscR regulon sheds light on the regulation of iron homeostasis in Caulobacter. Frontiers in Microbiology. v. 15, p. 1463854, 2024. Qualis: A1
25.	EUCLYDES, VERONICA ; BRAGA, CAIO I.S. ; GOUVEIA, GISELE ; MARTINEZ, RAQUEL C.R. ; CAMILO, CAROLINE ; SIMÕES, SERGIO N. ; MARTINS-JR, DAVID C. ; FRACOLLI, LISLAINE ; ARGEU, ADRIANA ; FERRARO, ALEXANDRE ; MATIJASEVICH, ALICIA ; FATORI, DANIEL ; MIGUEL, EURIPEDES C. ; POLANCZYK, GUILHERME V. ; BRENTANI, HELENA. Maternal immune response during pregnancy and neurodevelopmental outcomes: A longitudinal approach. Brain Behavior & Immunity-Health. v. 40, p. 100832, 2024. Qualis: Não identificado (BRAIN BEHAVIOR & IMMUNITY-HEALTH)
26.	FEITOSA-JUNIOR, OSEIAS R. ; LUBBE, ANDREA ; KOSINA, SUZANNE M. ; MARTINS-JUNIOR, JOAQUIM ; BARBOSA, DEIBS ; BACCARI, CLELIA ; ZAINI, Paulo A. ; BOWEN, BENJAMIN P. ; NORTHEN, TRENT R. ; LINDOW, STEVEN E. ; da Silva, Aline M.. The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones. METABOLITES. v. 14, p. 82, 2024. Qualis: A2
27.	FERNANDEZ-MATERAN, FRANCELYS V. ; OLIVOS-CAICEDO, KELLY YOVANI ; DANIEL, STEVEN L. ; WALDEN, KIMBERLY K. O. ; FIELDS, CHRISTOPHER J. ; HERNANDEZ, ALVARO G. ; ALVES, JOAO M. P. ; RIDLON, JASON M.. Genome sequences of nine strains isolated from human feces. Microbiology Resource Announcements. v. 11, p. e00848-24, 2024. Qualis: C
28.	FLORES, VINICIUS S. ; AMGARTEN, DEYVID E. ; IHA, BRUNO KOSHIN VÁZQUEZ ; RYON, KRISTA A. ; DANKO, DAVID ; TIERNEY, BRADEN T. ; MASON, CHRISTOPHER ; DA SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS. Discovery and description of novel phage genomes from urban microbiomes sampled by the MetaSUB consortium. Scientific Reports. v. 14, p. ARTN 7913, 2024. Qualis: A2
29.	GAETA, N.C. ; DE SÁ GUIMARÃES, A.M. ; TIMENETSKY, J. ; CLOUSER, S. ; GREGORY, L. ; GANDA, E.. Comparative genomic analysis of Brazilian Mesomycoplasma ovipneumoniae strains revealed genomic differences associated with the geographic origin and health status and mutations in the gyrA. VETERINARY MICROBIOLOGY. v. 295, p. 110158, 2024. Qualis: A1
30.	Giuliatti, Silvana; BENEDETTI, ANNA FLAVIA FIGUEREDO ; RAMOS, RAQUEL MARTINEZ ; PETROLI, REGINALDO JOSÉ ; DOMENICE, SORAHIA ; MENDONCA, BERENICE BILHARINHO ; BATISTA, RAFAEL LOCH. Hydropathic AF-2 variants in the androgen receptor gene among androgen insensitivity patients. Andrology. v. 1, p. 1-12, 2024. Qualis: Não identificado (ANDROLOGY)
31.	GONÇALVES, ANDRÉ N. A. ; COSTA, PRISCILLA R. ; THOMAZELLA, MATEUS V. ; CORREIA, CAROLINA A. ; MARMORATO, MARIANA P. ; DIAS, JULIANA Z. C. ; SILVEIRA, CASSIA G. T. ; MAESTRI, ALVINO ; CERQUEIRA, NATALIA B. ; MOREIRA, CARLOS H. V. ; BUCCHERI, RENATA ; FÉLIX, ALVINA C. ; MARTINS, FELIPE M. ; MASO, VANESSA E. ; FERREIRA, FREDERICO M. ; ARAÚJO, JOSÉ D. A. ; VASCONCELOS, AMANDA P. ; GONZALEZ'DIAS, PATRÍCIA ; PELLETIER, ADAM'NICOLAS ; NAKAYA, H. I. ; et.al. Systems Immunology Approaches to Understanding Immune Responses in Acute Infection of Yellow Fever Patients. JOURNAL OF MEDICAL VIROLOGY. v. 96, p. 1, 2024. Qualis: B1
32.	Grandis, A. ; SANTOS, H. P. ; TONINI, P. P. ; SALLES, I. S. ; PERES, A. S. C. ; Carpita, N. C. ; BUCKERIDGE, M. S.. Role of cell wall polysaccharides in water distribution during seed imbibition ofHymenaea courbarilL.. PLANT BIOLOGY. v. 26, p. 955-967, 2024. Qualis: A2
33.	GRANDIS, Adriana ; FORTIRER, JANAINA ; PAGLIUSO, DÉBORA ; BUCKERIDGE, MARCOS. Scientific Research on Bioethanol in Brazil: History and Prospects for Sustainable Biofuel. Sustainability. v. 16, p. 4167, 2024. Qualis: A1
34.	GUPTA, SHANTANU ; SILVEIRA, DANER A. ; LORENZONI, PEDRO R. ; MOMBACH, JOSE CARLOS M. ; HASHIMOTO, RONALDO F.. LncRNA PTENP1/miR-21/PTEN Axis Modulates EMT and Drug Resistance in Cancer: Dynamic Boolean Modeling for Cell Fates in DNA Damage Response. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 25, p. 8264, 2024. Qualis: A2
35.	Hünemeier, Tábita. Biogeographic Perspectives on Our Species? Genetic Diversification. MOLECULAR BIOLOGY AND EVOLUTION. v. 00, p. 000-000, 2024. Qualis: A1
36.	JARDIM POLI, PEDRO ; FISCHER-CARVALHO, AGATHA ; TAHIRA, ANA CAROLINA ; CHAN, JOHN D. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; SENA AMARAL, MURILO. Long Non-Coding RNA Levels Are Modulated in Schistosoma mansoni Following In Vivo Praziquantel Exposure. Non-Coding Rna. v. 10, p. 27, 2024. Qualis: B2
37.	LEITE, JEAN MICHEL R.S. ; RIBEIRO, ADÈLE ; PEREIRA, JAQUELINE L. ; DE SOUZA, CAMILA ALVES ; HEIDER, DOMINIK ; SOLER, JÚLIA M. PAVAN ; MINGRONI-NETTO, REGINA CÉLIA ; FISBERG, REGINA M. ; ROGERO, MARCELO M. ; SARTI, FLAVIA M.. Missense genetic variants in major bitter taste receptors are associated with diet quality and food intake in a highly admixed underrepresented population. CLINICAL NUTRITION ESPEN. v. 63, p. 311-321, 2024. Qualis: B2
38.	LOCOSSELLI, GIULIANO MASELLI ; CINTRA, BRUNO BARÇANTE LADVOCAT ; FERREIRA, LUCIANA SCHWANDNER ; DA SILVA-LUZ, CINTIA LUIZA ; MIYAHARA, AUGUSTO AKIO LUCCHEZI ; BRIENEN, ROEL J.W. ; GLOOR, EMANUEL ; BOOM, ARNOUD ; GRANDIS, Adriana ; BUCKERIDGE, MARCOS SILVEIRA. Stress-tolerant trees for resilient cities: Tree-ring analysis reveals species suitable for a future climate. URBAN CLIMATE. v. 55, p. 101964, 2024. Qualis: A1
39.	LUBIANA, TIAGO ; Nakaya, Helder I.. A reasonable request for true data sharing. Lancet Regional Health-Americas. v. 35, p. 100795, 2024. Qualis: Não identificado (LANCET REGIONAL HEALTH-AMERICAS)
40.	LUZ, KLEBER G. ; BEZERRA, FERNANDA R.O. ; SICOLO, MIGUEL A. ; SILVA, ANUSKA A.R.S. ; EGITO, ANDRÉA A. ; SUNIGA, PAULA A.P. ; MORIYA, JÉSSICA C.K. ; SANTOS, MARIA G. ; MANTOVANI, CYNTHIA ; SILVA, JULIA S. ; ALMEIDA, NALVO F. ; GUIMARÃES, ANA MÁRCIA S. ; DÁVILA, ALBERTO M.R. ; JARDIM, RODRIGO ; SANTOS, LENITA R. ; ARAÚJO, FLÁBIO R.. Clinical and Molecular Characterization of Human Burkholderia mallei Infection, Brazil. EMERGING INFECTIOUS DISEASES. v. 30, p. 1-1, 2024. Qualis: A1
41.	MARTINS, FELIPE DE MELLO ; VIDAL, ALESSANDRA PINHEIRO ; GIDDALURU, JEEVAN ; DA SILVA, BERNARDO MAIA ; LEE, EVA K. ; ZHANG, PEIJUE ; CARDOZO, LUCAS ESTEVES ; PRETE, CARLOS AUGUSTO ; DOMINGUES, HELVES HUMBERTO ; SABINO, ESTER CERDEIRA ; SAMPAIO, VANDERSON DE SOUZA ; MONTEIRO, WUELTON MARCELO ; Nakaya, Helder I. Temporal and spatial analysis of over 7,000 measles cases outbreak from 2018 to 2019 in the Brazilian Amazon. EINSTEIN (SÃO PAULO). v. 22, p. 1, 2024. Qualis: B1
42.	MONTEIRO, CÍNTIA J. ; DUARTE, MAX J. ; MACHADO, MAYARA CRISTINA V. ; MASCARENHAS, ROMÁRIO S. ; PALMA, PATRÍCIA V. BONINI ; GARCÍA, HENRY D. MOGOLLÓN ; Nakaya, Helder I. ; CUNHA, THIAGO M. ; DONADI, EDUARDO A. ; PASSOS, GERALDO A.. The single-cell transcriptome of mTECs and CD4+ thymocytes under adhesion revealed heterogeneity of mTECs and a network controlled by Aire and lncRNAs. Frontiers in Immunology. v. 15, p. 1, 2024. Qualis: A1
43.	MORALES-VICENTE, DAVID A ; Tahira, Ana C ; WOELLNER-SANTOS, DAISY ; AMARAL, MURILO S ; BERZOTI-COELHO, MARIA G ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. The human developing cerebral cortex is characterized by an elevated de novo expression of lncRNAs in excitatory neurons. MOLECULAR BIOLOGY AND EVOLUTION. v. 41, p. msae123, 2024. Qualis: A1
44.	MUNER, K. ; KILGOUR, J. ; OMETTO, T. ; BRANDAO, A. P. D. ; DOS SANTOS, A. P. ; Guimaraes, A.M.S.. Cross-sectional study of personal protective equipment use, training and biosafety preparedness among healthcare workers during the first months of the SARS-CoV-2 pandemic in Brazil. BMJ Public Health. v. 2, p. e000654, 2024. Qualis: A2 (BMC PUBLIC HEALTH)
45.	NACHTIGALL, PEDRO G ; DURHAM, ALAN M ; ROKYTA, DARIN R ; JUNQUEIRA-DE-AZEVEDO, INÁCIO L M. ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages. GigaScience. v. 13, p. giad116, 2024. Qualis: A1
46.	NACIMENTO, RAFAEL ARAUJO ; REZENDE, VANESSA THEODORO ; ORTEGA, FÁBIO JOSÉ MUNERATTI ; CARVALHO, SYLVESTRE AURELIANO ; BUCKERIDGE, MARCOS SILVEIRA ; GAMEIRO, AUGUSTO HAUBER ; RENNÓ, FRANCISCO PALMA. Sustainability and Brazilian Agricultural Production: A Bibliometric Analysis. Sustainability. v. 16, p. 1833, 2024. Qualis: A1
47.	NASCIMENTO FILHO, EDSON G. ; VIEIRA, MÔNICA L. ; DIAS, MERIELLEN ; MENDES, MARIA A. ; SANCHEZ, FABIO B. ; Setubal, João C. ; HEINEMANN, MARCOS B. ; SOUZA, GISELE O. ; PIMENTA, DANIEL C. ; NASCIMENTO, ANA L.T.O.. Global proteome of the saprophytic strain Leptospira biflexa and comparative analysis with pathogenic strain Leptospira interrogans uncover new pathogenesis mechanisms. Journal of Proteomics. v. 297, p. 105125, 2024. Qualis: A1
48.	PEREIRA VASCONCELOS, AMANDA ; SANTOS E SILVA, JUAN CARLO ; SIMIZO, ADRIANA ; PEÑA AVILA, JONATHAN ; NASSAR REICH GOLDSTEIN, GABRIEL ; PRADO DE OLIVEIRA, PEDRO HENRIQUE ; MOGOLLÓN GARCÍA, HENRY ; DE CARVALHO FRAGA, CARLOS ALBERTO ; NAKAYA, HELDER. Sex-Based Differences in Thyroid Plasma B Cell Infiltration: Implications for Autoimmune Disease Susceptibility. Endocrinology. v. 1, p. 1, 2024. Qualis: A2
49.	PEREIRA, JAQUELINE L. ; DE SOUZA, CAMILA A. ; NEYRA, JENNYFER E. M. ; LEITE, JEAN M. R. S. ; CERQUEIRA, ANDRESSA ; MINGRONI-NETTO, REGINA C. ; SOLER, JULIA M. P. ; ROGERO, MARCELO M. ; SARTI, FLAVIA M. ; FISBERG, REGINA M.. Genetic Ancestry and Self-Reported -Skin Color/Race- in the Urban Admixed Population of São Paulo City, Brazil. Genes. v. 15, p. 917, 2024. Qualis: A2
50.	RIBEIRO, DILSON FAGUNDES ; DE MATOS, JÉSSICA PEREIRA ; ROCHA, LORRANA CACHUITE MENDES ; DA SILVA, ANA KARLA ; DE PAULA, CAMILA HENRIQUES ; CORDEIRO, ISABELLA FERREIRA ; DE CARVALHO LEMES, CAMILA GRACYELLE ; SANCHEZ, ANGÉLICA BIANCHINI ; GARCIA, CAMILA CARRIÃO MACHADO ; SETUBAL, JOÃO CARLOS ; de SOUZA, Robson Francisco ; DE MELLO VARANI, ALESSANDRO ; ALMEIDA, NALVO FRANCO ; MOREIRA, LEANDRO MARCIO. From cactus to crop: genomic insights of a beneficial and non-pathogenic Curtobacterium flaccumfaciens strain and the evolution of its pathosystem. MOLECULAR GENETICS AND GENOMICS. v. 299, p. 105, 2024. Qualis: A4
51.	SCARAMBONI, CAROLINE ; FARIAS, CAMILA NOVAIS ; DE CASTRO VASCONCELLOS, PÉROLA ; LEVI, MICHAEL ; SADIKTSIS, IOANNIS ; POZZA, SIMONE ANDRÉA ; DE ARAGÃO UMBUZEIRO, GISELA ; WATANABE, TETSUSHI ; DE OLIVEIRA RODRIGUES, POLIANY CRISTINY ; GRANDIS, Adriana ; PAGLIUSO, DÉBORA ; BUCKERIDGE, MARCOS SILVEIRA ; CAMPOS, MARIA LUCIA ARRUDA MOURA ; KIPPLER, MARIA ; DREIJ, KRISTIAN ; DE OLIVEIRA GALVÃO, MARCOS FELIPE. Characterization of cross-continental PM2.5: Insights into emissions and chemical composition. ATMOSPHERIC RESEARCH. v. 305, p. 107423, 2024. Qualis: A1
52.	SILVA-PEREIRA, TAIANA TAINÁ ; CAMARGO, N. C. S. ; GUIMARÃES, A. M. S.. Diversification of gene content in the Mycobacterium tuberculosis complex is determined by phylogenetic and ecological signatures. MICROBIOLOGY SPECTRUM. v. 1, p. 1, 2024. Qualis: A2
53.	SILVA-SOUSA, THAYNA ; USUDA, JÚLIA NAKANISHI ; AL-ARAWE, NADA ; FRIAS, FRANCISCA ; HINTERSEHER, IRENE ; CATAR, RUSAN ; LUECHT, CHRISTIAN ; RIESNER, KATARINA ; HACKEL, ALEXANDER ; SCHIMKE, LENA F ; DIAS, HAROLDO DUTRA ; FILGUEIRAS, IGOR SALERNO ; Nakaya, Helder I ; CAMARA, NIELS OLSEN SARAIVA ; FISCHER, STEFAN ; RIEMEKASTEN, GABRIELA ; RINGDÉN, OLLE ; PENACK, OLAF ; WINKLER, TOBIAS ; DUDA, GEORG ; et.al. The global evolution and impact of systems biology and artificial intelligence in stem cell research and therapeutics development: a scoping review. STEM CELLS. v. 42, p. 929-944, 2024. Qualis: Não identificado (STEM CELLS)
54.	SOUZA, ALEX JUNIOR SOUZA DE ; SOUZA FILHO, ANTÔNIO FRANCISCO DE ; ZIMPEL, CRISTINA KRAEMER ; AYUPE, MARINA CAÇADOR ; ARAÚJO, MARCELO VALDEMIR DE ; MACHADO, RAFAEL RAHAL GUARAGNA ; SALLES, ERIKA ; SALGADO, CAIO LOUREIRO ; TAVARES, MARIANA SILVA ; SILVA-PEREIRA, TAIANA TAINÁ ; SOUZA, PAULA CAROLINA DE ; DURIGON, EDISON LUIZ ; HEINEMANN, MARCOS BRYAN ; BRANDÃO, PAULO EDUARDO ; FONSECA, DENISE MORAIS DA ; GUIMARÃES, ANA MARCIA DE SÁ ; SÁ, LILIAN ROSE MARQUES DE. Hepatic endotheliitis in Golden Syrian hamsters (Mesocricetus auratus) experimentally infected with SARS-CoV-2. REVISTA DO INSTITUTO DE MEDICINA TROPICAL DE SÃO PAULO. v. 66, p. 1, 2024. Qualis: B1
55.	SOUZA, DIEGO TRINDADE DE ; Vibranovski, Maria Dulcetti ; MATIOLI, SERGIO RUSSO. Como nascem os genes?. Genética na Escola (on line). v. 19, p. 89-101, 2024. Qualis: B3
56.	SÁ, RAFAELA OLIVEIRA DA SILVA ; MICHELASSI, GABRIEL DE CASTRO ; BUTRICO, DIEGO DOS SANTOS ; FRANCO, FELIPE DE OLIVEIRA ; SUMIYA, FERNANDO MITSUO ; PORTOLESE, JOANA ; BRENTANI, HELENA ; NUNES, FÁTIMA L.S. ; MACHADO-LIMA, ARIANE. Enhancing ensemble classifiers utilizing gaze tracking data for autism spectrum disorder diagnosis. COMPUTERS IN BIOLOGY AND MEDICINE. v. 182, p. 109184, 2024. Qualis: A2
57.	TIETZE, ETHAN ; BARBOSA, ANDRE ROCHA ; ARAUJO, BRUNO ; EUCLYDES, VERONICA ; SPIEGELBERG, BAILEY ; CHO, HYEON JIN ; LEE, YONG KYU ; WANG, YANHONG ; MCCORD, ALEJANDRA ; LORENZETTI, ALAN ; FELTRIN, ARTHUR ; VAN DE LEEMPUT, JOYCE ; DI CARLO, PASQUALE ; URSINI, GIANLUCA ; BENJAMIN, KYNON J. ; BRENTANI, HELENA ; KLEINMAN, JOEL E. ; HYDE, THOMAS M. ; WEINBERGER, DANIEL R. ; MCKAY, RONALD ; et.al. Human archetypal pluripotent stem cells differentiate into trophoblast stem cells via endogenous BMP5/7 induction without transitioning through naive state. Scientific Reports. v. 14, p. 3291, 2024. Qualis: A2
58.	URBAN, BRITTA C. ; GONÇALVES, ANDRÉ N.A. ; LOUKOV, DESSI ; PASSOS, FERNANDO M. ; REINÉ, JESÚS ; GONZALEZ-DIAS, PATRÍCIA ; SOLÓRZANO, CARLA ; MITSI, ELENA ; NIKOLAOU, ELISSAVET ; O?CONNOR, DANIEL ; COLLINS, ANDREA M. ; ADLER, HUGH ; POLLARD, ANDREW ; RYLANCE, JAMIE ; GORDON, STEPHEN B. ; JOCHEMS, SIMON P. ; Nakaya, Helder I. ; FERREIRA, DANIELA M.. Inflammation of the nasal mucosa is associated with susceptibility to experimental pneumococcal challenge in older adults. Mucosal Immunology. v. 1, p. 1, 2024. Qualis: A1
59.	URBANSKI, ALYSSON HENRIQUE ; MASO, VANESSA E. ; MARTINS, FELIPE M. ; DA COSTA-MARTINS, ANDRÉ GUILHERME ; DO NASCIMENTO OLIVEIRA, ANA PAULA B. ; Nakaya, Helder I.. Chikungunya-Driven Gene Expression Linked to Osteoclast Survival and Chronic Arthralgia. INFECTIOUS DISEASE REPORTS. v. 16, p. 914-922, 2024. Qualis: Não identificado (INFECTIOUS DISEASE REPORTS)
60.	VASQUEZ, F. J. A. ; FARES, A. S. ; Giuliatti, S. Machine Learning-Enhanced Molecular Dynamics Analysis of Residue Variant Effects on Human ACE2 and Furin Protein Interactions with SARS-CoV-2 Spike. IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). v. 1, p. 1-8, 2024.Qualis: Não identificado (IEEE CONFERENCE ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY)
61.	VINCES, TANIA CHURASACARI ; DE SOUZA, ANACLETO SILVA ; CARVALHO, CECÍLIA F. ; VISNARDI, ALINE BIAZOLA ; TEIXEIRA, RAPHAEL D. ; LLONTOP, EDGAR E. ; BISMARA, BEATRIZ APARECIDA PASSOS ; VICENTE, ELISABETE J. ; PEREIRA, JOSÉ O. ; de SOUZA, Robson Francisco ; YONAMINE, MAURICIO ; MARANA, SANDRO ROBERTO ; FARAH, CHUCK SHAKER ; GUZZO, CRISTIANE R.. Monomeric Esterase: Insights into Cooperative Behavior, Hysteresis/Allokairy. BIOCHEMISTRY. v. 63, p. 1178-1193, 2024. Qualis: A3
62.	WOELLNER-SANTOS, DAISY ; TAHIRA, ANA C. ; MALVEZZI, JOÃO V. M. ; MESEL, VINICIUS ; MORALES-VICENTE, DAVID A. ; TRENTINI, MONALISA M. ; MARQUES-NETO, LÁZARO M. ; MATOS, ISAAC A. ; KANNO, ALEX I. ; PEREIRA, ADRIANA S. A. ; TEIXEIRA, ANDRÉ A. R. ; GIORDANO, RICARDO J. ; LEITE, LUCIANA C. C. ; PEREIRA, CARLOS A. B. ; DEMARCO, Ricardo ; AMARAL, MURILO S. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Schistosoma mansoni vaccine candidates identified by unbiased phage display screening in self-cured rhesus macaques. npj Vaccines. v. 9, p. 5, 2024. Qualis: Não identificado (NPJ VACCINES)
63.	ZAVATARO, ANA LUISA ELIAS ; SKÝPALOVÁ, KAROLÍNA ; VERGARA, PERCY OMAR TULLUME ; SILVA, FLAVIA MAIA ; BUTENKO, ANZHELIKA ; INSTITUTE OF PARASITOLOGY, CZECH ACADEMY OF SCIENCES ; YURCHENKO, VYACHESLAV ; KOSTYGOV, ALEXEI YU. ; ALVES, JOÃO MARCELO PEREIRA. The genome of the endosymbiont-harboring trypanosomatid Kentomonas sorsogonicus. Protistology. v. 18, p. 72-81, 2024. Qualis: Não identificado (PROTISTOLOGY)

2023

1.	ALNOCH, ROBSON C. ; SALGADO, JOSE C. S. ; ALVES, GABRIELA S. ; DE ANDRADES, DIANDRA ; MELEIRO, LUANA P. ; SEGATO, FERNANDO ; BERTO, GABRIELA LEILA ; WARD, RICHARD J. ; Buckeridge, Marcos S. ; Polizeli, Maria de Lourdes T. M.. Biochemical Characterization of an Endoglucanase GH7 from Thermophile Thermothielavioides terrestris Expressed on Aspergillus nidulans. Catalysts. v. 13, p. 582, 2023. Qualis: A2
2.	ALVES, EDUARDO ; NAKAYA, HELDER ; GUIMARÃES, EUZÉBIO ; GARCIA, CÉLIA R.S.. Combining IP3 affinity chromatography and bioinformatics reveals a novel protein-IP3 binding site on Plasmodium falciparum MDR1 transporter. Current Research in Microbial Sciences. v. 4, p. 100179, 2023. Qualis: Não identificado (CURRENT RESEARCH IN MICROBIAL SCIENCES)
3.	BARRETO, ESTER A. ; CRUZ, AMANDA S. ; VERAS, FLAVIO P. ; MARTINS, RONALDO ; BERNARDELLI, RAFAELLA S. ; PAIVA, ISADORA M. ; LIMA, THAIS M. ; SINGH, YOUVIKA ; GUIMARÃES, RAPHAEL C. ; DAMASCENO, SAMARA ; PEREIRA, NAYARA ; ALVES, JOÃO MANOEL ; GONÇALVES, TIAGO T. ; FORATO, JULIA ; MURARO, STÉFANIE P. ; SOUZA, GABRIELA F. ; BATAH, SABRINA SETEMBRE ; PROENCA-MODENA, JOSÉ L. ; MORI, MARCELO A. ; NAKAYA, H. I. ; et.al. COVID-19-related hyperglycemia is associated with infection of hepatocytes and stimulation of gluconeogenesis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 120, p. 1-1, 2023. Qualis: A1
4.	BARRETO, MATHEUS QUINTANA ; GARBELOTTI, CAROLINA VICTAL ; DE MOURA SOARES, JÉSSICA ; GRANDIS, Adriana ; BUCKERIDGE, MARCOS SILVEIRA ; LEONE, FRANCISCO ASSIS ; WARD, RICHARD JOHN. Xylose isomerase from Piromyces sp. E2 is a promiscuous enzyme with epimerase activity. ENZYME AND MICROBIAL TECHNOLOGY. v. 166, p. 110230, 2023. Qualis: A2
5.	BASSO, MARCOS FERNANDO ; LOURENÇO-TESSUTTI, ISABELA TRISTAN ; MOREIRA-PINTO, CLIDIA EDUARDA ; MENDES, RENEIDA APARECIDA GODINHO ; PEREIRA, DEBORA GONÇALVES ; GRANDIS, Adriana ; MACEDO, LEONARDO LIMA PEPINO ; MACEDO, AMANDA FERREIRA ; GOMES, ANA CRISTINA MENESES MENDES ; ARRAES, FABRÍCIO BARBOSA MONTEIRO ; TOGAWA, ROBERTO COITI ; DO CARMO COSTA, MARCOS MOTA ; MARCELINO-GUIMARAES, FRANCISMAR CORRÊA ; SILVA, MARIA CRISTINA MATTAR ; FLOH, ENY IOCHEVET SEGAL ; BUCKERIDGE, MARCOS SILVEIRA ; DE ALMEIDA ENGLER, JANICE ; GROSSI-DE-SA, MARIA FATIMA. Overexpression of the GmEXPA1 gene reduces plant susceptibility to Meloidogyne incognita. PLANT CELL REPORTS. v. 42, p. 137-152, 2023. Qualis: A1
6.	BINI, ANDRESSA PERES ; ROSSI, GUILHERME DUARTE ; POESCHL, YVONNE ; SERRA, MARINA CARNAZ DUARTE ; CAMARGO, Luis Eduardo Aranha ; Monteiro-Vitorello, Claudia Barros ; Van Sluys, Marie-Anne ; VAN DAM, NICOLE M. ; UTHE, HENRIETTE ; CRESTE, SILVANA. Molecular, biochemical and metabolomics analyses reveal constitutive and pathogen-induced defense responses of two sugarcane contrasting genotypes against leaf scald disease. PLANT PHYSIOLOGY AND BIOCHEMISTRY. v. 203, p. 108033, 2023. Qualis: A1
7.	BINI, ANDRESSA PERES ; SERRA, MARINA CARNAZ DUARTE ; PASTORE, IZADORA FARINA ; BRONDI, CAROLINA VELUCI ; CAMARGO, Luis Eduardo Aranha ; Monteiro-Vitorello, Claudia Barros ; Van Sluys, Marie-Anne ; ROSSI, GUILHERME DUARTE ; CRESTE, SILVANA. Transmission of Xanthomonas albilineans by the spittlebug, Mahanarva fimbriolata (Hemiptera: Cercopidae), in Brazil: first report of an insect vector for the causal agent of sugarcane leaf scald. JOURNAL OF INSECT SCIENCE. v. 23, p. 116, 2023. Qualis: C
8.	BOETTGER, BRUNO C. ; PIROUPO, CARLOS M. ; Setubal, João C. ; GIRARDELLO, RAQUEL ; PIGNATARI, ANTÔNIO C. C.. Co-carriage of Plasmid NDM and Chromosomal KPC in Klebsiella pneumoniae ST255 Human Wound Isolate in Brazil. CURRENT MICROBIOLOGY. v. 80, p. 394, 2023. Qualis: B1
9.	BORGES, JÉSSICA BASSANI ; OLIVEIRA, VICTOR FERNANDES ; DAGLI-HERNANDEZ, CAROLINA ; FERREIRA, GLAUCIO MONTEIRO ; BARBOSA, THAIS KRISTINI ALMENDROS AFONSO ; DA SILVA RODRIGUES MARÇAL, ELISANGELA ; LOS, BRUNA ; MALAQUIAS, VANESSA BARBOSA ; BORTOLIN, RAUL HERNANDES ; FREITAS, RENATA CAROLINE COSTA ; MORI, AUGUSTO AKIRA ; BASTOS, GISELE MEDEIROS ; GONÇALVES, RODRIGO MARQUES ; ARAÚJO, DANIEL BRANCO ; ZATZ, HENRY ; BERTOLAMI, ADRIANA ; FALUDI, ANDRÉ ARPAD ; BERTOLAMI, MARCELO CHIARA ; DE MORAES REGO SOUZA, AMANDA GUERRA ; NAKAYA, H. I. ; et.al. Identification of pathogenic variants in the Brazilian cohort with Familial hypercholesterolemia using exon-targeted gene sequencing. GENE. v. 875, p. 147501-1, 2023. Qualis: A4
10.	BRITO, ANITA ; FRANCO, FELIPE ; BRENTANI, HELENA ; BELTRÃO-BRAGA, PATRÍCIA CRISTINA BALEEIRO. Assessment of vulnerability dimensions considering Family History and environmental interplay in Autism Spectrum Disorder. BMC Psychiatry. v. 23, p. 254, 2023. Qualis: A3
11.	BUZZO, B. B. ; Giuliatti, Silvana ; PEREIRA, P. A. M. ; GOMES-PEPE, E. S. ; LEMOS, E. G. M.. Molecular Docking of Lac_CB10: Highlighting the Great Potential for Bioremediation of Recalcitrant Chemical Compounds by One Predicted Bacteroidetes CopA-Laccase. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 24, p. 9785, 2023. Qualis: A2
12.	CARRAU, ANALÍA ; TANO, JOSEFINA ; MOYANO, LAURA ; RIPA, MARÍA BELÉN ; PETROCELLI, SILVANA ; PISKULIC, LAURA ; MOREIRA, LEANDRO MARCIO ; PATANÉ, JOSÉ SALVATORE LEISTER ; SETUBAL, JOÃO CARLOS ; ORELLANO, ELENA GRACIELA. A novel BLUF photoreceptor modulates the Xanthomonas citri subsp. citri-host plant interaction. PHOTOCHEMICAL SCIENCES (ONLINE). v. 1, p. 1, 2023. Qualis: A3
13.	CASTILLO-ORDONEZ1, W. O. ; ARISTIZABAL-PACHON, A. F. ; ALVES, L. B. ; Giuliatti, Silvana. Epigenetic Regulation exerted by Caliphruria subedentata and Galantamine: An In Vitro and In Silico Approach for Mimic Alzheimer?s Disease. Journal of Biomolecular Structure and Dynamics. v. 1, p. 3N-11, 2023. Qualis: A3 (JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS)
14.	CONTATO, ALEX GRAÇA ; NOGUEIRA, KAROLINE MARIA VIEIRA ; BUCKERIDGE, MARCOS SILVEIRA ; SILVA, ROBERTO NASCIMENTO ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Trichoderma longibrachiatum and thermothelomyces thermophilus co-culture: improvement the saccharification profile of different sugarcane bagasse varieties. BIOTECHNOLOGY LETTERS. v. 1, p. 1, 2023. Qualis: A4
15.	CORREIA, BANNY SILVA BARBOSA ; DE MORAES PONTES, JOÃO GUILHERME ; NANI, JOÃO VICTOR SILVA ; VILLALTA, FABIAN ; MOR, NATALIA CRISTINA ; BORDINI, DANIELA ; BRUNONI, DÉCIO ; BRENTANI, HELENA ; MARI, JAIR JESUS ; HAYASHI, MIRIAN A. F. ; TASIC, LJUBICA. 1 H NMR Metabolomics and Lipidomics To Monitor Positive Responses in Children with Autism Spectrum Disorder Following a Guided Parental Intervention: A Pilot Study. ACS Chemical Neuroscience. v. 14, p. 1137-1145, 2023. Qualis: A1
16.	COUTO-SILVA, C. M. ; NUNES, K. ; VENTURINI, G. ; CASTRO E SILVA, MARCOS ARAÚJO ; PEREIRA, L. V. ; COMAS, D. ; PEREIRA, A. C. ; HÜNEMEIER, T.. Indigenous people from Amazon show genetic signatures of pathogen-driven selection. SCIENCE ADVANCES. v. 00, p. 000, 2023. Qualis: A1
17.	CUNHA, VANESSA A. S. ; TANDONNET, SOPHIE ; FERREIRA, DINIZ LIMA ; RODRIGUES, ANDRE V. ; Torres, Tatiana Teixeira. Exploring Life History Choices: Using Temperature and Substrate Type as Interacting Factors for Blowfly Larval and Female Preferences. Jove-Journal of Visualized Experiments. v. 201, p. e65835, 2023. Qualis: B1 (JOURNAL OF VISUALIZED EXPERIMENTS)
18.	DA MATTA, VANIA LUCIA R. ; GONÇALVES, ANDRÉ N. ; GOMES, CLÁUDIA MARIA C. ; CHOUMAN, ISLAM H. ; FERREIRA, FREDERICO M. ; CAMPOS, MARLIANE B. ; LIMA, LUCIANA V. ; VASCONCELOS DOS SANTOS, THIAGO ; RAMOS, PATRÍCIA KARLA ; FURTADO, RODRIGO R. ; LAURENTI, MARCIA D. ; CORBETT, CARLOS EDUARDO P. ; Nakaya, Helder I. ; SILVEIRA, FERNANDO T.. Gene Signatures of Symptomatic and Asymptomatic Clinical-Immunological Profiles of Human Infection by Leishmania (L.) chagasi in Amazonian Brazil. Microorganisms. v. 11, p. 653, 2023. Qualis: B1
19.	DA SILVA FORTIRER, JANAINA ; GRANDIS, Adriana ; PAGLIUSO, DÉBORA ; de Toledo Castanho, Camila ; BUCKERIDGE, MARCOS SILVEIRA. Meta-analysis of the responses of tree and herb to elevated CO2 in Brazil. Scientific Reports. v. 13, p. 15832, 2023. Qualis: A2
20.	DA SILVA, JOVANDERSON J.B. ; DE ABREU, LUÍS G.F. ; FERRARI, ALLAN J.R. ; DE CARVALHO, LUCAS M. ; Grandis, Adriana ; Buckeridge, Marcos S. ; FILL, TAÍCIA P. ; PEREIRA, GONÇALO A.G. ; CARAZZOLLE, MARCELO F.. Diurnal metabolism of energy-cane and sugarcane: A metabolomic and non-structural carbohydrate analysis. INDUSTRIAL CROPS AND PRODUCTS. v. 202, p. 117056, 2023. Qualis: A1
21.	DAVID, EBUKA ELIJAH ; IGWENYI, IKECHUKU OKORIE ; IROHA, IFEANYICHUKWU ROMANUS ; MARTINS, Layla Farage ; UCEDA-CAMPOS, GUILLERMO ; Da Silva, Aline Maria. Draft genome sequence of Enterobacter cloacae ST473 harbouring blaCMH-3 isolated from a human patient diagnosed with recurrent bacteriuria in Nigeria. Access Microbiology. v. 5, p. 000565.v3, 2023. Qualis: Não identificado (ACCESS MICROBIOLOGY)
22.	DE ARAÚJO, HUGO L. ; PICINATO, BEATRIZ A. ; LORENZETTI, ALAN P. R. ; MUTHUNAYAKE, NISANSALA S. ; RATHNAYAKA-MUDIYANSELAGE, I. W. ; DOS SANTOS, NAARA M. ; SCHRADER, JARED ; Koide, Tie ; MARQUES, MARILIS V.. The DEAD-box RNA helicase RhlB is required for efficient RNA processing at low temperature in Caulobacter. MICROBIOLOGY SPECTRUM. v. 11, p. e0193423, 2023. Qualis: A2
23.	DE FREITAS AMORIM, VITOR MARTINS ; de SOUZA, Robson Francisco ; GUZZO, CRISTIANE RODRIGUES ; DE SOUZA, ANACLETO SILVA. Molecular Dynamics Simulations Suggest SARS-CoV-2 3CLpro Mutations in Beta and Omicron Variants Do Not Alter Binding Affinities for Cleavage Sites of Non-Structural Proteins. COVID. v. 3, p. 622-636, 2023. Qualis: Não identificado (COVID)
24.	DE MORAES, DIOGO ; KNITTEL, THIAGO L ; NUNES SANTOS, LUANA ; WASSANO, NATÁLIA S ; MONTEIRO, LAUAR B ; CARREGARI, VICTOR C ; BOLDRINI, VINICIUS O ; DIAS, ARTUR HS ; SOUZA, GABRIELA F ; MURARO, STÉFANIE PRIMON ; FERRARI, ALLAN JR ; BRUNETTI, NATALIA S ; PROFETA, GERSON S ; VIRGÍLIO-DA-SILVA, JOÃO VICTOR ; DAVANZO, GUSTAVO G ; VERAS, FLAVIO P ; TAVARES, LUCAS A ; FORATO, JULIA ; CASTRO, ICARO MS ; NAKAYA, H. I. ; et.al. SARS-CoV-2 uses CD4 to infect T helper lymphocytes. eLife. v. 12, p. 1, 2023. Qualis: A1
25.	DE SOUZA RODRIGUES, TAMIRES ; ARGE, LUIS WILLIAN PACHECO ; DE FREITAS GUEDES, FERNANDA ALVES ; TRAVASSOS'LINS, JOÃO ; De Souza, Amanda Pereira ; COCURON, JEAN'CHRISTOPHE ; BUCKERIDGE, MARCOS SILVEIRA ; GROSSI'DE'SÁ, MARIA FÁTIMA ; ALVES'FERREIRA, MÁRCIO. Elevated CO 2 increases biomass of Sorghum bicolor green prop roots under drought conditions via soluble sugar accumulation and photosynthetic activity. PHYSIOLOGIA PLANTARUM. v. 175, p. e13984, 2023. Qualis: A2
26.	DE SOUZA XAVIER COSTA, NATÁLIA ; RIBEIRO JÚNIOR, GABRIEL ; DO NASCIMENTO, ELLEN CAROLINE TOLEDO ; DE BRITO, JÔSE MARA ; ANTONANGELO, LEILA ; FARIA, CAROLINE SILVÉRIO ; MONTEIRO, JHONATAS SIRINO ; SETUBAL, JOÃO CARLOS ; PINHO, JOÃO RENATO REBELLO ; PEREIRA, ROBERTA VERCIANO ; SEELAENDER, MARILIA ; DE CASTRO, GABRIELA SALIM ; LIMA, JOANNA D. C. C. ; DE ALMEIDA MONTEIRO, RENATA APARECIDA ; DUARTE-NETO, AMARO NUNES ; SALDIVA, PAULO HILÁRIO NASCIMENTO ; FERRAZ DA SILVA, LUIZ FERNANDO ; DOLHNIKOFF, MARISA ; MAUAD, THAIS. COVID-19 induces more pronounced extracellular matrix deposition than other causes of ARDS. RESPIRATORY RESEARCH. v. 24, p. 281, 2023. Qualis: A1
27.	DE SOUZA, ANACLETO SILVA ; de SOUZA, Robson Francisco ; GUZZO, CRISTIANE RODRIGUES. Cooperative and structural relationships of the trimeric Spike with infectivity and antibody escape of the strains Delta (B.1.617.2) and Omicron (BA.2, BA.5, and BQ.1). JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN. v. 37, p. 585-606, 2023. Qualis: A2
28.	DOS SANTOS, WANDERLEY D. ; GONZAGA, DIEGO E.R. ; SALVADOR, VICTOR HUGO ; FREITAS, DENIS L. ; JOIA, BRENO M. ; OLIVEIRA, DYONI M. ; LEITE, DÉBORA C.C. ; BIDO, GRACIENE S. ; FINGER-TEIXEIRA, ALINE ; DE SOUZA, AMANDA P. ; POLIZELI, MARIA DE LOURDES T.M. ; CONSTANTIN, RODRIGO P. ; MARCHIOSI, ROGÉRIO ; RIOS, FABIANO A. ; FERRARESE-FILHO, OSVALDO ; Buckeridge, Marcos S.. Natural lignin modulators improve lignocellulose saccharification of field-grown sugarcane, soybean, and brachiaria. BIOMASS & BIOENERGY. v. 168, p. 106684, 2023. Qualis: A1
29.	DOURADO, M. N. ; PIERRY, PAULO M. ; FEITOSA-JUNIOR, OSEIAS R. ; UCEDA-CAMPOS, GUILLERMO ; BARBOSA, D. ; ZAINI, Paulo A. ; DANDEKAR, A. M. ; A M da Silva ; ARAUJO, W. L.. Transcriptome and Secretome Analyses of Endophyte Methylobacterium mesophilicum and Pathogen Xylella fastidiosa Interacting Show Nutrient Competition. Microorganisms. v. 11, p. ARTN 2755, 2023. Qualis: B1
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71.	RODRIGUEZ CARNERO, LUIS ANTONIO ; KURAMOTO, ANDRÉIA ; CAMPOS DE OLIVEIRA, LÉA ; MONTEIRO, JHONATAS SIRINO ; SETUBAL, JOÃO CARLOS ; CUNHA-NETO, EDÉCIO ; CERDEIRA SABINO, ESTER ; GIORDANO, RICARDO JOSÉ. Anti-Trypanosoma cruzi antibody profiling in patients with Chagas disease treated with benznidazole assessed by genome phage display. PLoS Neglected Tropical Diseases. v. 17, p. e0011019, 2023. Qualis: A1
72.	RODRÍGUEZ DE CARA, MARÍA ÁNGELES ; JAY, PAUL ; ROUGEMONT, QUENTIN ; CHOUTEAU, MATHIEU ; WHIBLEY, ANNABEL ; HUBER, BARBARA ; PIRON-PRUNIER, FLORENCE ; RAMOS, RENATO ROGNER ; FREITAS, ANDRÉ V. L. ; SALAZAR, CAMILO ; SILVA-BRANDÃO, KARINA LUCAS ; Torres, Tatiana Teixeira ; JORON, MATHIEU. Balancing selection at a wing pattern locus is associated with major shifts in genome-wide patterns of diversity and gene flow. Peer Community Journal. v. 3, p. e65, 2023. Qualis: Não identificado (PEER COMMUNITY JOURNAL)
73.	ROSINDO DAHER DE BARROS, FÁBIO ; NOVAIS F. DA SILVA, CAIO ; DE CASTRO MICHELASSI, GABRIEL ; BRENTANI, HELENA ; NUNES, FÁTIMA L.S. ; MACHADO-LIMA, ARIANE. Computer aided diagnosis of neurodevelopmental disorders and genetic syndromes based on facial images - A systematic literature review. HELIYON. v. 9, p. e20517, 2023. Qualis: A4
74.	SAMPAIO, VANDERSON S. ; LOPES, RAFAEL ; OZAHATA, MINA CINTHO ; Nakaya, Helder I. ; SOUSA, ERICK ; ARAÚJO, JOSÉ D. ; BRAGATTE, MARCELO A.S. ; BRITO, ANDERSON F. ; GRESPAN, REGINA MAURA ZETTONI ; CAPUANI, MARIA LIGIA DAMATO ; DOMINGUES, HELVES HUMBERTO ; PELLINI, ALESSANDRA CRISTINA GUEDES ; MATEOS, SHEILA DE OLIVEIRA GARCIA ; CONDE, MÔNICA TILLI REIS PESSOA ; EUDES LEAL, FABIO ; SABINO, ESTER ; SIMÃO, MARIANGELA ; KALIL, JORGE. Thinking out of the box: revisiting health surveillance based on medical records. Antimicrobial Stewardship & Healthcare Epidemiology. v. 3, p. 1, 2023. Qualis: Não identificado (ANTIMICROBIAL STEWARDSHIP & HEALTHCARE EPIDEMIOLOGY)
75.	SAYEDAHMED, EKRAMY E. ; ARAÚJO, MARCELO VALDEMIR ; SILVA-PEREIRA, TAIANA TAINÁ ; CHOTHE, SHUBHADA K. ; ELKASHIF, AHMED ; ALHASHIMI, MARWA ; WANG, WEN-CHIEN ; Santos, Andrea P. ; NAIR, MEERA SURENDRAN ; GONTU, ABHINAY ; NISSLY, RUTH ; FRANCISCO DE SOUZA FILHO, ANTÔNIO ; TAVARES, MARIANA SILVA ; AYUPE, MARINA CAÇADOR ; SALGADO, CAIO LOUREIRO ; DONIZETTI DE OLIVEIRA CANDIDO, ÉRIKA ; LEAL OLIVEIRA, DANIELLE BRUNA ; DURIGON, EDISON LUIZ ; HEINEMANN, MARCOS BRYAN ; GUIMARAES, A. M. S. ; et.al. Impact of an autophagy-inducing peptide on immunogenicity and protection efficacy of an adenoviral vectored SARS-CoV-2 vaccine expressing the spike protein. Molecular Therapy-Methods & Clinical Development. v. 1, p. 1, 2023. Qualis: A3 (MOLECULAR THERAPY ¿ METHODS & CLINICAL DEVELOPMENT)
76.	SILVA DE MELO, BRUNO MARCEL ; VERAS, FLÁVIO PROTÁSIO ; ZWICKY, PASCALE ; LIMA, DIÓGENES ; INGELFINGER, FLORIAN ; MARTINS, TIMNA VARELA ; DA SILVA PRADO, DOUGLAS ; SCHÄRLI, STEFANIE ; PUBLIO, GABRIEL ; HIROKI, CARLOS HIROJI ; MELO, PAULO HENRIQUE ; SARAIVA, ANDRÉ ; NORBIATO, THAINÁ ; LIMA, LEONARDO ; RYFFEL, BERNHARD ; VOGL, THOMAS ; ROTH, JOHANNES ; WAISMAN, ARI ; Nakaya, Helder I. ; DA SILVA SOUZA, CACILDA ; et.al. S100A9 Drives the Chronification of Psoriasiform Inflammation by Inducing IL-23/Type 3 Immunity. JOURNAL OF INVESTIGATIVE DERMATOLOGY. v. 1, p. 1, 2023. Qualis: A1
77.	SILVA, BRUNA M. ; GOMES, GIOVANNI F. ; VERAS, FLAVIO P. ; CAMBIER, SEPPE ; SILVA, GABRIEL V.L. ; QUADROS, ANDREZA U. ; CAETITÉ, DIEGO B. ; NASCIMENTO, DANIELE C. ; SILVA, CAMILLA M. ; SILVA, JULIANA C. ; DAMASCENO, SAMARA ; SCHNEIDER, AYDA H. ; BERETTA, FABIO ; BATAH, SABRINA S. ; CASTRO, ICARO M.S. ; PAIVA, ISADORA M. ; RODRIGUES, TAMARA ; SALINA, ANA ; MARTINS, RONALDO ; NAKAYA, H. I. ; et.al. C5aR1 signaling triggers lung immunopathology in COVID-19 through neutrophil extracellular traps. The journal of clinical investigation (Online). v. 133, p. 1-1, 2023. Qualis: A1
78.	SILVEIRA, GILBERT O. ; COELHO, HELENA S. ; PEREIRA, ADRIANA S. A. ; MIYASATO, PATRÍCIA A. ; SANTOS, DAISY W. ; MACIEL, LUCAS F. ; OLBERG, GIOVANNA G. G. ; TAHIRA, ANA C. ; NAKANO, ELIANA ; OLIVEIRA, MARIA LEONOR S. ; AMARAL, MURILO S. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Long non-coding RNAs are essential for Schistosoma mansoni pairing-dependent adult worm homeostasis and fertility. PLoS Pathogens. v. 19, p. e1011369, 2023. Qualis: A1
79.	SINGH, NITIN K. ; WOOD, JASON M. ; PATANE, JOSE ; MOURA, LIVIA MARIA SILVA ; LOMBARDINO, JONATHAN ; SETUBAL, JOÃO CARLOS ; VENKATESWARAN, KASTHURI. Characterization of metagenome-assembled genomes from the International Space Station. Microbiome. v. 11, p. 125, 2023. Qualis: A1
80.	SUNIGA, P. A. P. ; MANTOVANI, C. ; SANTOS, M. G. ; EGITO, A. A. ; VERBISCK, N. V. ; SANTOS, L. R. ; DAVILA, A. M. R. ; ZIMPEL, CRISTINA KRAEMER ; ZERPA, M. C. S. ; CHIEBAO, D. P. ; GUIMARÃES, Ana Marcia de Sá ; NASSAR, A. F. C. ; ARAUJO, F.. Glanders Diagnosis in an Asymptomatic Mare from Brazil: Insights from Serology, Microbiological Culture, Mass Spectrometry, and Genome Sequencing. PATHOGENS. v. 12, p. 1250, 2023. Qualis: A2
81.	TANDONNET, SOPHIE ; KRSTICEVIC, FLAVIA ; BASIKA, TATIANA ; PAPATHANOS, PHILIPPOS A ; TORRES, TATIANA T ; SCOTT, MAXWELL J. A chromosomal-scale reference genome of the New World Screwworm,. DNA Research. v. 30, p. dsac042, 2023. Qualis: A1
82.	THEMOTEO, RAFAEL M. ; DE PAULA, VANESSA J. R. ; ROCHA, NICOLE K. R. ; BRENTANI, HELENA ; FORLENZA, ORESTES V.. Lithium Prevents Telomere Shortening in Cortical Neurons in Amyloid-Beta Induced Toxicity. NeuroSci. v. 4, p. 1-8, 2023. Qualis: Não identificado (NEUROSCI)
83.	TRINCA, VITOR ; CARLI, SIBELI ; ULIANA, JOÃO VITOR CARDOSO ; GARBELOTTI, CAROLINA VICTAL ; MENDES DA SILVA, MARIANA ; KUNES, VITOR ; MELEIRO, LUANA PARRAS ; BRANCINI, GUILHERME THOMAZ PEREIRA ; MENZEL, FRANK ; ANDRIOLI, LUIZ PAULO MOURA ; Torres, Tatiana Teixeira ; WARD, RICHARD JOHN ; MONESI, NADIA. Biocatalytic potential of Pseudolycoriella CAZymes (Sciaroidea, Diptera) in degrading plant and fungal cell wall polysaccharides. Iscience. v. 26, p. 106449, 2023. Qualis: Não identificado (ISCIENCE)
84.	TULLUME-VERGARA, PERCY O. ; CAICEDO, KELLY Y. O. ; TANTALEAN, JOSE F. C. ; Serrano, Myrna G. ; Buck, Gregory A. ; Teixeira, Marta M. G. ; SHAW, JEFFREY J. ; ALVES, JOAO M. P.. Genomes of Endotrypanum monterogeii from Panama and Zelonia costaricensis from Brazil: Expansion of Multigene Families in Leishmaniinae Parasites That Are Close Relatives of Leishmania spp.. PATHOGENS. v. 12, p. 1409, 2023. Qualis: A2
85.	VIANELLO, ELEONORA ; PERSSON, JOSEFINE ; ANDERSSON, BJÖRN ; VAN VEEN, SUZANNE ; DIAS, THOMAZ LÜSCHER ; SANTORO, FRANCESCO ; ÖSTENSSON, MALIN ; OBUDULU, OGONNA ; AGBAJOGU, CHRISTOPHER ; TORKZADEH, SARA ; AGNANDJI, SELIDJI TODAGBE ; Ahmed, Rafi ; ANDERSON, JENNA ; AUDERSET, FLORIANE ; BEJON, PHILIP ; BORGIANNI, LUISA ; BROSNAHAN, JESSICA ; CIABATTINI, ANNALISA ; ENGLER, OLIVIER ; NAKAYA, H. I. ; et.al. Global blood miRNA profiling unravels early signatures of immunogenicity of Ebola vaccine rVSV-G-ZEBOV-GP. Iscience. v. 26, p. 108574, 2023. Qualis: Não identificado (ISCIENCE)
86.	VIBERT, BETHANY ; SEGURA, PATRICIA ; GALLAGHER, LOUISE ; GEORGIADES, STELIOS ; PERVANIDOU, PANAGIOTA ; THURM, AUDREY ; ALEXANDER, LINDSAY ; ANAGNOSTOU, EVDOKIA ; AOKI, YUTA ; BIRKEN, CATHERINE S. ; BISHOP, SOMER L. ; BOI, JESSICA ; BRAVACCIO, CARMELA ; BRENTANI, HELENA ; CANEVINI, PAOLA ; CARTA, ALESSANDRA ; CHARACH, ALICE ; COSTANTINO, ANTONELLA ; COST, KATHERINE T. ; CRAVO, ELAINE A ; et.al. CRISIS AFAR: an international collaborative study of the impact of the COVID-19 pandemic on mental health and service access in youth with autism and neurodevelopmental conditions. Molecular Autism. v. 14, p. 7, 2023. Qualis: Não identificado (MOLECULAR AUTISM)
87.	WILEY, KYLE S. ; CAMILO, CAROLINE ; GOUVEIA, GISELE ; EUCLYDES, VERÔNICA ; PANTER'BRICK, CATHERINE ; MATIJASEVICH, ALICIA ; FERRARO, ALEXANDRE ARCHANJO ; FRACOLLI, LISLAINE APARECIDA ; CHIESA, ANNA MARIA ; MIGUEL, EURIPEDES CONSTANTINO ; POLANCZYK, GUILHERME V. ; BRENTANI, HELENA. Maternal distress, DNA methylation, and fetal programing of stress physiology in Brazilian mother-infant pairs. DEVELOPMENTAL PSYCHOBIOLOGY. v. 65, p. e22352, 2023. Qualis: A2
88.	ZAMBALDE, ÉRIKA PEREIRA ; DIAS, THOMAZ LUSCHER ; MAKTURA, GRAZIELLE CELESTE ; AMORIM, MARIENE R. ; BRENHA, BIANCA ; SANTOS, LUANA NUNES ; BUSCARATTI, LUCAS ; ELSTON, JOÃO GABRIEL DE ANGELI ; MANCINI, MARIANA CAMARGO SILVA ; PAVAN, ISADORA CAROLINA BETIM ; TOLEDO-TEIXEIRA, DANIEL A. ; BISPO-DOS-SANTOS, KARINA ; PARISE, PIERINA L. ; MORELLI, ANA PAULA ; SILVA, LUIZ GUILHERME SALVINO DA ; CASTRO, ÍCARO MAIA SANTOS DE ; SACCON, TATIANA D. ; MORI, MARCELO A. ; GRANJA, FABIANA ; Nakaya, Helder I. ; et.al. Increased mTOR Signaling and Impaired Autophagic Flux Are Hallmarks of SARS-CoV-2 Infection. Current Issues in Molecular Biology (Online). v. 45, p. 327-336, 2023. Qualis: A4

2022

1.	AKIO LUCCHEZI MIYAHARA, AUGUSTO ; WILD, TOM ; AFONSO SANDRE, ADRIANA ; MESQUITA PELLEGRINO, PAULO RENATO ; DA SILVA FILHO, CARLOS ALBERTO ; SILVEIRA BUCKERIDGE, MARCOS ; MASELLI LOCOSSELLI, GIULIANO. Developing and classifying urban biomes as a basis for nature-based solutions. URBAN CLIMATE. v. 45, p. 101251, 2022. Qualis: A1
2.	ALNOCH, ROBSON C. ; ALVES, GABRIELA S. ; SALGADO, JOSE C. S. ; DE ANDRADES, DIANDRA ; FREITAS, EMANUELLE N. DE ; NOGUEIRA, KAROLINE M. V. ; VICI, ANA C. ; OLIVEIRA, DOUGLAS P. ; CARVALHO-JR, VALDEMIRO P. ; SILVA, ROBERTO N. ; Buckeridge, Marcos S. ; MICHELIN, MICHELE ; TEIXEIRA, JOSÉ A. ; Polizeli, Maria de Lourdes T. M.. Immobilization and Application of the Recombinant Xylanase GH10 of Malbranchea pulchella in the Production of Xylooligosaccharides from Hydrothermal Liquor of the Eucalyptus (Eucalyptus grandis) Wood Chips. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 23, p. 13329, 2022. Qualis: A2
3.	Alves, Levy Bueno ; CASTILLO-ORDOÑEZ, WILLIAN ORLANDO ; Giuliatti, Silvana. Virtual screening and molecular dynamics study of natural products against Rab10 for the treatment of Alzheimer?s disease. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. v. 42, p. 1-21, 2022. Qualis: A3
4.	AMGARTEN, DEYVID ; IHA, BRUNO KOSHIN VÁZQUEZ ; PIROUPO, CARLOS MORAIS ; DA SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS. vHULK, a New Tool for Bacteriophage Host Prediction Based on Annotated Genomic Features and Neural Networks. Phage-Therapy Applications And Research. v. 00, p. phage.2021.0016, 2022. Qualis: Não identificado (PHAGE-THERAPY APPLICATIONS AND RESEARCH)
5.	ANTUNES, KRIST H. ; STEIN, RENATO T. ; FRANCESCHINA, CAROLINE ; DA SILVA, EMANUELLE F. ; DE FREITAS, DEISE N. ; SILVEIRA, JOSIANE ; MOCELLIN, MAGÁLI ; LEITÃO, LIDIANE ; FACHI, JOSÉ L. ; PRAL, LAÍS P. ; GONZALEZ, AMANDA ; OLIVEIRA, SARAH ; DUARTE, LEONARDO ; CASSÃO, GISELE ; GONÇALVES, JOÃO I.B. ; REIS, TATIANE M. ; ABBADI, BRUNO L ; DORNELLES, MAIELE ; SPEROTTO, NATHÁLIA D.M. ; SETUBAL, J. C. ; et.al. Short-chain fatty acid acetate triggers antiviral response mediated by RIG-I in cells from infants with respiratory syncytial virus bronchiolitis. EBIOMEDICINE. v. 77, p. 103891, 2022. Qualis: A1
6.	ARAUJO, JOSÉ DENEY ; SANTOS-E-SILVA, JUAN CARLO ; COSTA-MARTINS, ANDRÉ GUILHERME ; SAMPAIO, VANDERSON ; DE CASTRO, DANIEL BARROS ; de Souza, Robson F. ; GIDDALURU, JEEVAN ; RAMOS, PABLO IVAN P. ; PITA, ROBESPIERRE ; BARRETO, MAURICIO L. ; BARRAL-NETTO, MANOEL ; NAKAYA, HELDER I.. Tucuxi-BLAST: Enabling fast and accurate record linkage of large-scale health-related administrative databases through a DNA-encoded approach. PeerJ. v. 10, p. e13507, 2022. Qualis: A2
7.	Baccalá, Luiz A. ; Sameshima, Koichi. Partial Directed Coherence and the Vector Autoregressive Modelling Myth and a Caveat. Frontiers in Network Physiology. v. 2, p. 845327, 2022. Qualis: Não identificado (FRONTIERS IN NETWORK PHYSIOLOGY)
8.	BALCÃO, VICTOR M ; BASU, AAKASH ; CIEZA, BASILIO ; ROSSI, FERNANDO N ; PEREIRA, CARLA ; VILA, MARTA MDC ; Setubal, João C ; HA, TAEKJIP ; da Silva, Aline M. Pseudomonas -tailed lytic phages: genome mechanical analysis and putative correlation with virion morphogenesis yield. Future Microbiology. v. 17, p. 10.2217/fmb-202, 2022. Qualis: A3
9.	BALCÃO, VICTOR M. ; MORELI, FERNANDA C. ; SILVA, ERICA C. ; BELLINE, BIANCA G. ; MARTINS, LAYLA F. ; ROSSI, FERNANDO P. N. ; PEREIRA, CARLA ; VILA, MARTA M. D. C. ; da Silva, Aline M.. Isolation and Molecular Characterization of a Novel Lytic Bacteriophage that Inactivates MDR Klebsiella Pneumoniae Strains. PHARMACEUTICS. v. 14, p. 1421, 2022. Qualis: A1
10.	BARRERA, JUNIOR ; HASHIMOTO, RONALDO F. ; HIRATA, Nina S. T. ; HIRATA, R. ; REIS, MARCELO S.. From Mathematical Morphology to machine learning of image operators. SÃO PAULO JOURNAL OF MATHEMATICAL SCIENCES. v. 16, p. 616-657, 2022. Qualis: B3
11.	BASSO, MARCOS FERNANDO ; LOURENÇO-TESSUTTI, ISABELA TRISTAN ; MOREIRA-PINTO, CLIDIA EDUARDA ; MENDES, RENEIDA APARECIDA GODINHO ; PAES-DE-MELO, BRUNO ; DAS NEVES, MAYSA ROSA ; MACEDO, AMANDA FERREIRA ; FIGUEIREDO, VIVIANE ; GRANDIS, Adriana ; MACEDO, LEONARDO LIMA PEPINO ; ARRAES, FABRÍCIO BARBOSA MONTEIRO ; DO CARMO COSTA, MARCOS MOTA ; TOGAWA, ROBERTO COITI ; ENRICH-PRAST, ALEX ; MARCELINO-GUIMARAES, FRANCISMAR CORRÊA ; GOMES, ANA CRISTINA MENESES MENDES ; SILVA, MARIA CRISTINA MATTAR ; FLOH, ENY IOCHEVET SEGAL ; BUCKERIDGE, MARCOS SILVEIRA ; DE ALMEIDA ENGLER, JANICE ; et.al. Overexpression of a soybean Globin (GmGlb1-1) gene reduces plant susceptibility to Meloidogyne incognita. PLANTA. v. 256, p. 1, 2022. Qualis: Não identificado (PLANTA)
12.	BISHOP, CAMERON R. ; CATEN, FELIPE TEN ; Nakaya, Helder I. ; Suhrbier, Andreas. Chikungunya patient transcriptional signatures faithfully recapitulated in a C57BL/6J mouse model. Frontiers in Immunology. v. 13, p. 1, 2022. Qualis: A1
13.	BORGES, LYSANDRO P. ; GUIMARÃES, ADRIANA G. ; FONSECA, DENNYSON LEANDRO M. ; FREIRE, PAULA P. ; BARRETO, ÍKARO D.C. ; SOUZA, DANIELA R.V. ; GURGEL, RICARDO Q. ; LOPES, ALINE S.A. ; MELQUIADES DE REZENDE NETO, JOSÉ ; DOS SANTOS, KEZIA A. ; MATOS, IGOR L.S. ; DA INVENÇÃO, GRAZIELLY B. ; OLIVEIRA, BRENDA M. ; SANTOS, ARYANNE A. ; SOARES, DANIELE ALMEIDA ; DE JESUS, PAMELA C. ; DOS SANTOS, CLIOMAR A. ; GOES, MARCO A.O. ; PLAÇA, DESIRÉE RODRIGUES ; NAKAYA, H. I. ; et.al. Cross-sectional analysis of students and school workers reveals a high number of asymptomatic SARS-CoV-2 infections during school reopening in Brazilian cities. HELIYON. v. 8, p. e11368, 2022. Qualis: A4
14.	BOTOSSO, V. F. ; JORGE, S. A. C. ; ASTRAY, R. M. ; GUIMARÃES, A. M. S. ; MATHOR, M. B. ; CARNEIRO, P. S. ; DURIGON, E. L. ; COVAS, D. ; OLIVEIRA, D. B. L. ; OLIVEIRA, R. N. ; MARIA, D. A. ; FERNANDES ETO, S. ; GALLINA, N. M. F. ; PIDDE, G. ; SILVA, D. T. ; VILLAS-BOAS, I. M. ; FERNANDES, D. C. ; AUADA, A. V. V. ; BANARI, A. ; SOUZA, A. F. ; et.al. Anti-SARS-CoV-2 Equine F (Ab')2 Immunoglobulin as a Possible Therapy for COVID-19. Scientific Reports. v. 12, p. 1-17, 2022.Qualis: A2
15.	BUTARELLI, ANA CAROLINA DE ARAÚJO ; FERREIRA, LUCAS SALOMÃO DE SOUSA ; RIYUZO, RAQUEL ; DALL?AGNOL, HIVANA MELO BARBOSA ; PIROUPO, CARLOS MORAIS ; DA SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS ; DALL?AGNOL, LEONARDO TEIXEIRA. Diversity assessment of photosynthesizers: comparative analysis of pre-cultivated and natural microbiome of sediments from Cerrado biome in Maranhão, Brazil. Environmental Science and Pollution Research. v. 29, p. 1-16, 2022. Qualis: Não identificado (ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH)
16.	CAMARGO, N. C. S. ; SILVA-PEREIRA, T. T. ; ZIMPEL, CRISTINA KRAEMER ; CAMACHO, M. ; ZELANIS, A. ; AONO, A. H. ; PATANE, J. S. L. ; Santos, A.P. ; GUIMARÃES, A. M. S.. The rate and role of pseudogenes of the Mycobacterium tuberculosis complex. Microbial Genomics. v. 1, p. 1, 2022.Qualis: B2
17.	CARHUARICRA HUAMAN, DENNIS E. ; LUNA ESPINOZA, LUIS R. ; RODRÍGUEZ CUEVA, CARMEN L. ; DURAN GONZALES, CARLA G. ; ROSADIO ALCÁNTARA, RAÚL H. ; Setubal, João C. ; MATURRANO HERNÁNDEZ, LENIN. Genomic Characterization of Salmonella Typhimurium Isolated from Guinea Pigs with Salmonellosis in Lima, Peru. Microorganisms. v. 10, p. 1726, 2022. Qualis: B1
18.	CARLOTTI, D. ; FERREIRA, J.E.. TEXT SUMMARIZATION AS AN EMPIRICAL LEGAL RESEARCH TOOL BASED ON MACHINE LEARNING ALGORITHMS. REVISTA DE ESTUDOS EMPÍRICOS EM DIREITO. v. 1, p. 1, 2022. Qualis: B1
19.	CARNEIRO, LARA APARECIDA BUFFONI DE CAMPOS ; FUZO, CARLOS ALESSANDRO ; MELEIRO, LUANA PARRAS ; CARLI, SIBELI ; BARRETO, MATHEUS QUINTANA ; LOURENZONI, MARCOS ROBERTO ; BUCKERIDGE, MARCOS SILVEIRA ; WARD, RICHARD JOHN. Selective xyloglucan oligosaccharide hydrolysis by a GH31 α-xylosidase from Escherichia coli. CARBOHYDRATE POLYMERS. v. 284, p. 119150, 2022. Qualis: A1
20.	CARVALHO, DANIELLE B. ; PAIXÃO, DOUGLAS A. ; PERSINOTI, GABRIELA F. ; Cota, Junio ; RABELO, SARITA C. ; Grandis, Adriana ; Souza, Amanda P. ; BUCKERIDGE, MARCOS ; RULLER, ROBERTO ; ZANPHORLIN, LETICIA M. ; Squina, Fabio M. ; CAIRO, JOAO P. L. F. ; MACHADO, EDNILDO A.. Degradation of Sugarcane Bagasse by Cockroach Consortium Bacteria. BioEnergy Research. v. 1, p. 1, 2022. Qualis: A1
21.	CASTRO E SILVA, MARCOS ARAÚJO ; FERRAZ, TIAGO ; COUTO-SILVA, CAINÃ M ; LEMES, RENAN B ; NUNES, KELLY ; COMAS, DAVID ; Hünemeier, Tábita. Population Histories and Genomic Diversity of South American Natives. MOLECULAR BIOLOGY AND EVOLUTION. v. 39, p. 000-000, 2022. Qualis: A1
22.	CONTATO, ALEX GRAÇA ; VICI, ANA CLAUDIA ; PINHEIRO, VANESSA ELISA ; OLIVEIRA, TÁSSIO BRITO DE ; FREITAS, EMANUELLE NEIVERTH DE ; ARANHA, GUILHERME MAURO ; VALVASSORA JUNIOR, ALMIR LUIZ APARECIDO ; RECHIA, CAREM GLEDES VARGAS ; BUCKERIDGE, MARCOS SILVEIRA ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Comparison of Trichoderma longibrachiatum Xyloglucanase Production Using Tamarind (Tamarindus indica) and Jatoba (Hymenaea courbaril) Seeds: Factorial Design and Immobilization on Ionic Supports. Fermentation-Basel. v. 8, p. 510, 2022. Qualis: Não identificado (FERMENTATION-BASEL)
23.	CRUNFLI, FERNANDA ; CARREGARI, VICTOR C. ; VERAS, FLAVIO P. ; SILVA, LUCAS S. ; NOGUEIRA, MATEUS HENRIQUE ; ANTUNES, ANDRÉ SARAIVA LEÃO MARCELO ; VENDRAMINI, PEDRO HENRIQUE ; VALENÇA, ALINE GAZZOLA FRAGNANI ; BRANDÃO-TELES, CAROLINE ; ZUCCOLI, GIULIANA DA SILVA ; REIS-DE-OLIVEIRA, GUILHERME ; SILVA-COSTA, LÍCIA C. ; SAIA-CEREDA, VERÔNICA MONTEIRO ; SMITH, BRADLEY J. ; CODO, ANA CAMPOS ; DE SOUZA, GABRIELA F ; MURARO, STÉFANIE P. ; PARISE, PIERINA LORENCINI ; TOLEDO-TEIXEIRA, DANIEL A. ; NAKAYA, H. I. ; et.al. Morphological, cellular, and molecular basis of brain infection in COVID-19 patients. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 119, p. 1, 2022. Qualis: A1
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105.	SILVEIRA, GILBERT O. ; COELHO, HELENA S. ; AMARAL, MURILO S. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Long non-coding RNAs as possible therapeutic targets in protozoa, and in Schistosoma and other helminths. PARASITOLOGY RESEARCH. v. 121, p. 1091-1115, 2022. Qualis: A1
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107.	TRINCA, VITOR ; ULIANA, JOÃO VITOR CARDOSO ; RIBEIRO, GEYZA KATRINNY SOUSA ; Torres, Tatiana Teixeira ; MONESI, NADIA. Characterization of the mitochondrial genomes of Bradysia hygida , Phytosciara flavipes and Trichosia splendens (Diptera: Sciaridae) and novel insights on the control region of sciarid mitogenomes. INSECT MOLECULAR BIOLOGY. v. 31, p. 482-496, 2022. Qualis: A1
108.	UCEDA-CAMPOS, GUILLERMO ; FEITOSA-JUNIOR, OSEIAS R. ; SANTIAGO, CAIO R. N. ; PIERRY, PAULO M. ; ZAINI, PAULO A. ; DE SANTANA, WESLEY O. ; MARTINS-JUNIOR, JOAQUIM ; BARBOSA, DEIBS ; DIGIAMPIETRI, Luciano A. ; Setubal, João C. ; DA SILVA, ALINE M.. Comparative Genomics of Xylella fastidiosa Explores Candidate Host-Specificity Determinants and Expands the Known Repertoire of Mobile Genetic Elements and Immunity Systems. Microorganisms. v. 10, p. 914, 2022. Qualis: B1
109.	VERAS, FLÁVIO P. ; PUBLIO, GABRIEL A. ; MELO, BRUNO M. ; PRADO, DOUGLAS S. ; NORBIATO, THAINÁ ; CECILIO, NERRY T. ; HIROKI, CARLOS ; DAMASCENO, LUIS EDUARDO A. ; JUNG, REBECCA ; TOLLER-KAWAHISA, JULIANA E. ; MARTINS, TIMNA V. ; ASSUNÇÃO, STELLA F. ; LIMA, DIOGENES ; ALVES, MARCIA G. ; VIEIRA, GABRIEL V. ; TAVARES, LUCAS A. ; ALVES-REZENDE, ANA L.R. ; KARBACH, SUSANNE H. ; Nakaya, Helder I. ; CUNHA, THIAGO M. ; et.al. Pyruvate kinase M2 mediates IL-17 signaling in keratinocytes driving psoriatic skin inflammation. Cell Reports. v. 41, p. 111897, 2022. Qualis: A1
110.	WANDERLEY, CARLOS WAGNER S. ; MAGANIN, ALEXANDRE G.M. ; ADJAFRE, BEATRIZ ; MENDES, ATLANTE S. ; SILVA, CONCEIÇÃO ELIDIANNE ANIBAL ; QUADROS, ANDREZA URBA ; LUIZ, JOÃO PAULO MESQUITA ; SILVA, CAMILA MEIRELLES S. ; SILVA, NICOLE R. ; OLIVEIRA, FRANCISCO FABIO BEZERRA ; GOMES, FRANCISCO ISAAC F. ; RESTREPO, JEFERSON LEANDRO J. ; SPECK-HERNANDEZ, CESAR A. ; TURAÇA, FERNANDA ; SILVA, GABRIEL VICTOR LUCENA ; PIGATTO, GLAUCE R. ; Nakaya, Helder I. ; MOTA, JOSE MAURICIO ; BARROSO-SOUSA, ROMUALDO ; ALVES-FILHO, JOSÉ C. ; et.al. PD-1/PD-L1 Inhibition Enhances Chemotherapy-Induced Neuropathic Pain by Suppressing Neuroimmune Antinociceptive Signaling. Cancer Immunology Research. v. 10, p. 1299-1308, 2022. Qualis: A1
111.	WANG, JIEYING ; SILVA, DENNIS J. ; KOSINKA, JI'Í ; TELEA, ALEXANDRU ; HASHIMOTO, RONALDO F. ; ROERDINK, JOS B.T.M.. Interactive image manipulation using morphological trees and spline-based skeletons. COMPUTERS & GRAPHICS-UK. v. 108, p. 61-73, 2022. Qualis: A2 (COMPUTERS & GRAPHICS)

2021

1.	ALARCÃO, FERNANDA SPEGGIORIN PEREIRA ; SHEPHARD, ELIZABETH ; FATORI, DANIEL ; AMÁVEL, RENATA ; CHIESA, ANNA ; FRACOLLI, LISLAINE ; MATIJASEVICH, ALICIA ; BRENTANI, HELENA ; NELSON, CHARLES A. ; LECKMAN, JAMES ; Miguel, Eurípedes Constantino ; POLANCZYK, GUILHERME V.. Promoting mother¿infant relationships and underlying neural correlates: Results from a randomized controlled trial of a home¿visiting program for adolescent mothers in Brazil. DEVELOPMENTAL SCIENCE. v. 24, p. 13113, 2021. Qualis: Não identificado (DEVELOPMENTAL SCIENCE)
2.	ALVES, CINTHIA C. ; DONADI, EDUARDO A. ; Giuliatti, Silvana. Structural Characterization of the Interaction of Hypoxia Inducible Factor-1 with Its Hypoxia Responsive Element at the −964G > A Variation Site of the HLA-G Promoter Region. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 22, p. 13046, 2021. Qualis: A2
3.	ALVES, JÚLIA A. ; PREVIATO-MELLO, MARISTELA ; BARROSO, KELLY C. M. ; Koide, Tie ; DA SILVA NETO, JOSÉ F.. The MarR family regulator OsbR controls oxidative stress response, anaerobic nitrate respiration, and biofilm formation in Chromobacterium violaceum. BMC MICROBIOLOGY. v. 21, p. 304, 2021. Qualis: A2
4.	ALZATE-MARIN, ANA LILIA ; RIVAS, PRISCILA MARLYS SÁ ; GALASCHI-TEIXEIRA, JULIANA S. ; BONIFÁCIO-ANACLETO, FERNANDO ; SILVA, CAROLINA COSTA ; SCHUSTER, IVAN ; NAZARENO, ALISON GONÇALVES ; Giuliatti, Silvana ; DA ROCHA FILHO, LÉO CORREIA ; GARÓFALO, CARLOS A. ; MARTINEZ, CARLOS A.. Warming and elevated CO2 induces changes in the reproductive dynamics of a tropical plant species. SCIENCE OF THE TOTAL ENVIRONMENT. v. 768, p. 1-11, 2021. Qualis: A1
5.	Amaral, Murilo Sena ; SANTOS, DAISY WOELLNER ; PEREIRA, ADRIANA S. A. ; TAHIRA, ANA CAROLINA ; MALVEZZI, JOÃO V. M. ; MIYASATO, PATRÍCIA AOKI ; FREITAS, RAFAELA DE PAULA ; KALIL, JORGE ; TJON KON FAT, ELISA M. ; DE DOOD, CLAUDIA J. ; CORSTJENS, PAUL L. A. M. ; VAN DAM, GOVERT J. ; NAKANO, ELIANA ; CASTRO, SIMONE DE OLIVEIRA ; MATTARAIA, VÂNIA GOMES DE MOURA ; AUGUSTO, RONALDO DE CARVALHO ; GRUNAU, CHRISTOPH ; Wilson, R. Alan ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; et.al. Rhesus macaques self-curing from a schistosome infection can display complete immunity to challenge. Nature Communications. v. 12, p. 6181, 2021. Qualis: A1
6.	AOKI, MATEUS NÓBREGA ; DE OLIVEIRA COELHO, BRUNA ; GÓES, LUIZ GUSTAVO BENTIM ; MINOPRIO, PAOLA ; DURIGON, EDISON LUIZ ; MORELLO, LUIS GUSTAVO ; MARCHINI, FABRICIO KLERYNTON ; RIEDIGER, IRINA NATASSJA ; DO CARMO DEBUR, MARIA ; Nakaya, Helder I. ; BLANES, LUCAS. Colorimetric RT-LAMP SARS-CoV-2 diagnostic sensitivity relies on color interpretation and viral load. Scientific Reports. v. 11, p. 1, 2021. Qualis: A2
7.	ARIAS-CARRASCO, RAÚL ; GIDDALURU, JEEVAN ; CARDOZO, LUCAS E. ; MARTINS, FELIPE ; MARACAJA-COUTINHO, VINICIUS ; Nakaya, Helder I.. OUTBREAK: a user-friendly georeferencing online tool for disease surveillance. BIOLOGICAL RESEARCH (ONLINE). v. 54, p. 20, 2021. Qualis: A3
8.	ASSIS, RENATA A.B. ; VARANI, ALESSANDRO M. ; SAGAWA, CINTIA H.D. ; PATANÉ, JOSÉ S.L. ; SETUBAL, JOÃO CARLOS ; UCEDA-CAMPOS, GUILLERMO ; DA SILVA, ALINE MARIA ; ZAINI, PAULO A. ; Almeida, Nalvo F. ; MOREIRA, LEANDRO MARCIO ; DANDEKAR, ABHAYA M.. A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence. GENOMICS. v. 113, p. 2513-2525, 2021. Qualis: A3
9.	Baccalá, Luiz A. ; Sameshima, Koichi. Frequency Domain Repercussions of Instantaneous Granger Causality. Entropy. v. 23, p. 1037, 2021. Qualis: A4
10.	Baccalá, Luiz A. ; Sameshima, Koichi. Partial directed coherence: twenty years on some history and an appraisal. BIOLOGICAL CYBERNETICS. v. 115, p. 195-204, 2021. Qualis: A2
11.	BENEDÉ'UBIETO, RAQUEL ; ESTÉVEZ'VÁZQUEZ, OLGA ; GUO, FEIFEI ; CHEN, CHAOBO ; SINGH, YOUVIKA ; Nakaya, Helder I. ; GÓMEZ DEL MORAL, MANUEL ; LAMAS'PAZ, ARANTZA ; MORÁN, LAURA ; LÓPEZ'ALCÁNTARA, NURIA ; REISSING, JOHANNA ; BRUNS, TONY ; AVILA, MATÍAS A. ; SANTAMARÍA, EVA ; MAZARIEGOS, MARINA S. ; WOITOK, MARIUS MAXIMILIAN ; HAAS, UTE ; ZHENG, KANG ; JUÁREZ, IGNACIO ; MARTÍN'VILLA, JOSÉ MANUEL ; et.al. An Experimental DUAL Model of Advanced Liver Damage. Hepatology Communications. v. 1, p. 1, 2021. Qualis: C
12.	BOROVINA JOSKO, JOÃO MARCELO ; Ferreira, João Eduardo. Using visual-interactive properties to support data quality visual assessment on abstract and timeless data. Journal of Information and Data Management - JIDM. v. 12, p. 1, 2021. Qualis: B3
13.	BRAGA, LUCAS P. P. ; COUTINHO, FELIPE H. ; AMGARTEN, DEYVID E. ; KOT, WITOLD ; HANSEN, LARS ; Setubal, João C. ; PHILIPPOT, LAURENT. Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis. Environmental Microbiology Reports. v. 13, p. 348-354, 2021. Qualis: A2
14.	BRAGA, LUCAS PALMA PEREZ ; PEREIRA, ROBERTA VERCIANO ; MARTINS, LAYLA FARAGE ; MOURA, LIVIA MARIA SILVA ; SANCHEZ, FABIO BELTRAME ; PATANÉ, JOSÉ SALVATORE LEISTER ; DA SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS. Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions. BMC GENOMICS. v. 22, p. 652, 2021. Qualis: A2
15.	BURTON, C. L. ; LEMIRE, M. ; XIAO, B. ; CORFIELD, E. C. ; ERDMAN, L. ; BRALTEN, J. ; POELMANS, G. ; YU, D. ; SHAHEEN, S. ; STRUG, L. J. ; SCHACHAR, R. J. ; CROSBIE, J. ; ARNOLD, P. D. ; BRENTANI, O. W. G. H. ; Brentani, H. Genome-wide association study of pediatric obsessive-compulsive traits: shared genetic risk between traits and disorder. Translational Psychiatry. v. 11, p. 91, 2021.Qualis: A1
16.	CALANCA, NAIADE ; BINATO, SARA MARTORELI SILVEIRA ; DA SILVA, SABRINA DANIELA ; Brentani, Helena Paula ; SENNES, LUIZ UBIRAJARA ; PINTO, CLÓVIS ANTONIO LOPES ; DOMINGUES, MARIA APARECIDA CUSTÓDIO ; FONSECA-ALVES, CARLOS EDUARDO ; RAINHO, CLAUDIA APARECIDA ; ROGATTO, SILVIA REGINA. Master Regulators of Epithelial-Mesenchymal Transition and WNT Signaling Pathways in Juvenile Nasopharyngeal Angiofibromas. Biomedicines. v. 9, p. 1258, 2021. Qualis: C
17.	CARDOSO, GISELE ANTONIAZZI ; DESZO, MARINA SANTOS ; Torres, Tatiana Teixeira. Evolution of coding sequence and gene expression of blowflies and botflies with contrasting feeding habits. GENOMICS. v. 113, p. 699-706, 2021. Qualis: A3
18.	CARLI, GABRIEL JOSÉ ; CONTILIANI, DANYEL FERNANDES ; Giuliatti, Silvana ; PEREIRA, TIAGO CAMPOS. An Animal Able To Tolerate D 2 O. CHEMBIOCHEM. v. 22, p. 988-991, 2021. Qualis: A3
19.	CARNEIRO, P. A. ; ZIMPEL, CRISTINA KRAEMER ; PASQUATTI, T. N. ; SILVA-PEREIRA, T. T. ; TAKATANI, H. ; SILVA, C. ; ABRAMOVITCH, R. ; GUIMARÃES, A. M. S. ; DAVILA, A. ; ARAUJO, F. ; KANEENE, J.. Genetic diversity and potential paths of transmission of Mycobacterium bovis in Amazon: the discovery of M. bovis lineage Lb1 circulating in South America. FRONTIERS IN VETERINARY SCIENCE. v. 8, p. 630989, 2021. Qualis: A1
20.	CARNIEL, BEATRIZ F. ; MARCON, FERNANDO ; RYLANCE, JAMIE ; GERMAN, ESTHER L. ; ZAIDI, SEHER ; REINE, JESUS ; NEGERA, EDESSA ; NIKOLAOU, ELISSAVET ; POJAR, SHERIN ; SOLÓRZANO, CARLA ; COLLINS, ANDREA M. ; CONNOR, VICTORIA ; BOGAERT, DEBBY ; GORDON, STEPHEN B. ; Nakaya, Helder I. ; FERREIRA, DANIELA M. ; JOCHEMS, SIMON P. ; MITSI, ELENA. Pneumococcal colonization impairs mucosal immune responses to Live Attenuated Influenza Vaccine in adults. JCI INSIGHT. v. 1, p. 1, 2021. Qualis: B2
21.	CASARO, MATEUS B. ; THOMAS, ANDREW M. ; MENDES, EDUARDO ; FUKUMORI, CLAUDIO ; RIBEIRO, WILLIAN R. ; OLIVEIRA, FERNANDO A. ; CRISMA, AMANDA R. ; MURATA, GILSON M. ; BIZZARRO, BRUNA ; SÁ-NUNES, ANDERSON ; Setubal, Joao C. ; MAYER, MARCIA P. A. ; MARTINS, FLAVIANO S. ; VIEIRA, ANGÉLICA T. ; ANTIORIO, ANA T. F. B. ; TAVARES-DE-LIMA, WOTHAN ; CAMARA, NIELS O. S. ; CURI, RUI ; DIAS-NETO, Emmanuel ; FERREIRA, CAROLINE M. ; et.al. A probiotic has differential effects on allergic airway inflammation in A/J and C57BL/6 mice and is correlated with the gut microbiome. Microbiome. v. 9, p. 134, 2021. Qualis: A1
22.	CASTRO E SILVA, MARCOS ARAÚJO ; FERRAZ, TIAGO ; Bortolini, Maria Cátira ; COMAS, DAVID ; Hünemeier, Tábita. Deep genetic affinity between coastal Pacific and Amazonian natives evidenced by Australasian ancestry. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 118, p. e2025739118, 2021. Qualis: A1
23.	CATARINO, MARINO HILARIO ; PADILHA, BRUNO ; Ferreira, João Eduardo. DataUSP: Conjunto de serviços analíticos para apoio à tomada de decisões em uma instituição de ensino superior. Latin American Journal of Development. v. 3, p. 2495-2500, 2021. Qualis: Não identificado (LATIN AMERICAN JOURNAL OF DEVELOPMENT)
24.	CHEN, Y. ; ANDRÉ, M. ; ADHIKARI, K. ; BLIN, M. ; BONFANTE, B. ; MENDOZA'REVILLA, J. ; FUENTES'GUAJARDO, M. ; PALMAL, S. ; CHACÓN'DUQUE, J.C. ; HURTADO, M. ; VILLEGAS, V. ; GRANJA, V. ; JARAMILLO, C. ; ARIAS, W. ; LOZANO, R.B. ; EVERARDO'MARTÍNEZ, P. ; GÓMEZ'VALDÉS, J. ; VILLAMIL'RAMÍREZ, H. ; DE CERQUEIRA, C.C.S. ; HÜNEMEIER, T. ; et.al. A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans. BRITISH JOURNAL OF DERMATOLOGY. v. 00, p. bjd.20436, 2021. Qualis: A1
25.	CONTATO, ALEX GRAÇA ; DE OLIVEIRA, TÁSSIO BRITO ; ARANHA, GUILHERME MAURO ; DE FREITAS, EMANUELLE NEIVERTH ; VICI, ANA CLAUDIA ; NOGUEIRA, KAROLINE MARIA VIEIRA ; DE LUCAS, ROSYMAR COUTINHO ; SCARCELLA, ANA SÍLVIA DE ALMEIDA ; BUCKERIDGE, MARCOS SILVEIRA ; SILVA, ROBERTO NASCIMENTO ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Prospection of Fungal Lignocellulolytic Enzymes Produced from Jatoba (Hymenaea courbaril) and Tamarind (Tamarindus indica) Seeds: Scaling for Bioreactor and Saccharification Profile of Sugarcane Bagasse. Microorganisms. v. 9, p. 533, 2021. Qualis: B1
26.	COSTA-MARTINS, ANDRÉ G. ; MANE, KARIM ; LINDSEY, BENJAMIN B. ; OGAVA, RODRIGO L.T. ; CASTRO, ÍCARO ; JAGNE, YA JANKEY ; SALLAH, HADIJATOU J. ; ARMITAGE, EDWIN P. ; JARJU, SHEIKH ; AHADZIE, BANKOLE ; ELLIS-WATSON, REBECCA ; TREGONING, JOHN S. ; BINGLE, COLIN D. ; BOGAERT, DEBBY ; CLARKE, ED ; ORDOVAS-MONTANES, JOSE ; JEFFRIES, DAVID ; KAMPMANN, BEATE ; Nakaya, Helder I. ; DE SILVA, THUSHAN I. ; et.al. Prior upregulation of interferon pathways in the nasopharynx impacts viral shedding following live attenuated influenza vaccine challenge in children. Cell Reports Medicine. v. 1, p. 100465, 2021. Qualis: Não identificado (CELL REPORTS MEDICINE)
27.	COUTO, A. C. ; KMETIUK, L. B. ; DELAI, R. R. ; BRANDAO, A. P. D. ; MONTEIRO, C. O. ; SILVA, L. H. A. ; SOARES, C. ; BANARI, A. ; BACH, R. V. W. ; PETTAN-BREWER, C. ; Santos, A. P. ; GUIMARÃES, A. M. S. ; OLIVEIRA, D. B. L. ; DURIGON, E. L. ; Biondo, Alexander W.. High SARS-CoV-2 seroprevalence in persons experiencing homelessness and shelter workers from a day-shelter in São Paulo, Brazil. PLoS Neglected Tropical Diseases. v. 15, p. e0009754, 2021.Qualis: A1
28.	CRUZ, JOSIANE V. ; Giuliatti, Silvana ; ALVES, LEVY B. ; SILVA, RAÍ C. ; FERREIRA, ELENILZE F. B. ; KIMANI, NJOGU M. ; SILVA, CARLOS H. T. P. ; SOUZA, JOÃO S. N. DE ; ESPEJO-ROMÁN, JOSÉ M. ; SANTOS, CLEYDSON B. R.. Identification of novel potential cyclooxygenase-2 inhibitors using ligand- and structure-based virtual screening approaches. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. v. 39, p. 1-23, 2021. Qualis: A3
29.	DALL?AGNOL, BRUNO ; WEBSTER, ANELISE ; SOUZA, UGO ARAÚJO ; BARBIERI, ANTONELA ; MAYER, FABIANA QUOOS ; CARDOSO, GISELE ANTONIAZZI ; Torres, Tatiana Teixeira ; MACHADO, ROSANGELA ZACARIAS ; FERREIRA, CARLOS ALEXANDRE SANCHEZ ; RECK, JOSÉ. Genomic analysis on Brazilian strains of Anaplasma marginale. REVISTA BRASILEIRA DE PARASITOLOGIA VETERINARIA. v. 30, p. e000421, 2021. Qualis: A2 (REVISTA BRASILEIRA DE PARASITOLOGIA VETERINÁRIA)
30.	DE ARAÚJO, HUGO L. ; MARTINS, BIANCA P. ; VICENTE, ALEXANDRE M. ; LORENZETTI, ALAN P. R. ; Koide, Tie ; MARQUES, MARILIS V.. Cold Regulation of Genes Encoding Ion Transport Systems in the Oligotrophic Bacterium Caulobacter crescentus. MICROBIOLOGY SPECTRUM. v. 9, p. 10.1128, 2021. Qualis: A2
31.	DE AZAMBUJA RODRIGUES, PEDRO MENDES ; VALENTE, RICHARD HEMMI ; BRUNORO, GISELLE VILLA FLOR ; NAKAYA, HELDER TAKASHI IMOTO ; ARAÚJO-PEREIRA, MARIANA ; BOZZA, PATRICIA TORRES ; BOZZA, FERNANDO AUGUSTO ; TRUGILHO, MONIQUE RAMOS DE OLIVEIRA. Proteomics reveals disturbances in the immune response and energy metabolism of monocytes from patients with septic shock. Scientific Reports. v. 11, p. 1, 2021. Qualis: A2
32.	DE LUCAS, ROSYMAR COUTINHO ; DE OLIVEIRA, TÁSSIO BRITO ; LIMA, MATHEUS SANITÁ ; PASIN, THIAGO MACHADO ; SCARCELLA, ANA SÍLVIA DE ALMEIDA ; RIBEIRO, LILIANE FRAGA COSTA ; CARVALHO, CAIO ; DAMASIO, ANDRÉ RICARDO DE LIMA ; BUCKERIDGE, MARCOS SILVEIRA ; PRADE, ROLF ALEXANDER ; SEGATO, FERNANDO ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. The profile secretion of Aspergillus clavatus: Different pre-treatments of sugarcane bagasse distinctly induces holocellulases for the lignocellulosic biomass conversion into sugar. RENEWABLE ENERGY. v. 165, p. 748-757, 2021. Qualis: A2
33.	DE MEDEIROS OLIVEIRA, MAURO ; BONADIO, IGOR ; LIE DE MELO, ALICIA ; MENDES SOUZA, GLAUCIA ; Durham, Alan Mitchell. TSSFinder-fast and accurate ab initio prediction of the core promoter in eukaryotic genomes. BRIEFINGS IN BIOINFORMATICS. v. 22, p. 1-12, 2021. Qualis: A1
34.	DE PEDRO-JOVÉ, R. ; PUIGVERT, M. ; SEBASTIÀ, P. ; MACHO, A. P. ; Monteiro, J. S. ; COLL, N. S. ; SETÚBAL, J. C. ; VALLS, M.. Dynamic expression of Ralstonia solanacearum virulence factors and metabolism-controlling genes during plant infection. BMC GENOMICS. v. 22, p. 170, 2021. Qualis: A2
35.	DE SOUZA, ANACLETO SILVA ; de SOUZA, Robson Francisco ; GUZZO, CRISTIANE RODRIGUES. Quantitative structure-activity relationships, molecular docking and molecular dynamics simulations reveal drug repurposing candidates as potent SARS-CoV-2 main protease inhibitors. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. v. NA, p. 1-18, 2021. Qualis: A3
36.	DODEN, HEIDI L. ; WOLF, PATRICIA G. ; GASKINS, H. REX ; ANANTHARAMAN, KARTHIK ; Alves, João M. P. ; RIDLON, JASON M.. Completion of the gut microbial epi-bile acid pathway. Gut Microbes. v. 13, p. 1907271, 2021. Qualis: A1
37.	DUARTE, RODRIGO R.R. ; BRENTANI, HELENA ; POWELL, TIMOTHY R.. Ditching candidate gene association studies: lessons from psychiatric genetics. REVISTA BRASILEIRA DE PSIQUIATRIA. v. 43, p. 342-344, 2021. Qualis: B1
38.	FABRO, ALEXANDRE TODOROVIC ; MACHADO-RUGOLO, JULIANA ; BALDAVIRA, CAMILA MACHADO ; PRIETO, TABATHA GUTIERREZ ; FARHAT, CECÍLIA ; ROTEA MANGONE, FLAVIA REGINA ; BATAH, SABRINA SETEMBRE ; CRUVINEL, HELOÍSA RESENDE ; ALDÁ, MAIARA ALMEIDA ; MONTEIRO, JHONATAS SIRINO ; PÁDUA, ADRIANA INACIO ; MORAIS, SIRLEI SIANI ; ANTÔNIO DE OLIVEIRA, ROGÉRIO ; SANTOS, MARCEL KOENIGKAM ; BADDINI-MARTINEZ, JOSÉ ANTÔNIO ; SETUBAL, JOÃO CARLOS ; RAINHO, CLAUDIA APARECIDA ; YOO, HUGO HYUNG BOK ; SILVA, PEDRO LEME ; NAGAI, MARIA APARECIDA ; et.al. Circulating Plasma miRNA and Clinical/Hemodynamic Characteristics Provide Additional Predictive Information About Acute Pulmonary Thromboembolism, Chronic Thromboembolic Pulmonary Hypertension and Idiopathic Pulmonary Hypertension. Frontiers in Pharmacology. v. 12, p. 1287, 2021. Qualis: A1
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83.	PESSOA, DIOGO DE OLIVEIRA ; RIUS, FLÁVIA EICHEMBERGER ; PAPAIZ, DEBORA D'ANGELO ; AYUB, ANA LUÍSA PEDROSO ; MORAIS, ALICE SANTANA ; DE SOUZA, CAMILA FERREIRA ; DA PAIXÃO, VINICIUS FERREIRA ; SETUBAL, JOÃO CARLOS ; NEWTON-BISHOP, JULIA ; NSENGIMANA, JÉRÉMIE ; AZEVEDO, HATYLAS ; REIS, EDUARDO MORAES ; JASIULIONIS, MIRIAM GALVONAS. Transcriptional signatures underlying dynamic phenotypic switching and novel disease biomarkers in a linear cellular model of melanoma progression. NEOPLASIA. v. 23, p. 439-455, 2021. Qualis: A2
84.	PICCHI-CONSTANTE, G. F. A. ; GUERRA-SLOMPO, E. P. ; Tahira, Ana C ; ALCANTARA, M. V. ; AMARAL, M. S. ; FERREIRA, A. S. ; BATISTA, M. ; BATISTA, C. M. ; GOLDENBERG, S. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; ZANCHIN, N. I. T.. Metacyclogenesis defects and gene expression hallmarks of histone deacetylase 4-deficient Trypanosoma cruzi cells. Scientific Reports. v. 11, p. 21671, 2021. Qualis: A2
85.	PRATA, ISADORA OLIVEIRA ; CUBILLOS, ELIANA FERNANDA GALINDO ; KRÜGER, ARNE ; BARBOSA, DEIBS ; MARTINS, JOAQUIM ; SETUBAL, JOÃO CARLOS ; WUNDERLICH, GERHARD. Plasmodium falciparum Acetyl-CoA Synthetase Is Essential for Parasite Intraerythrocytic Development and Chromatin Modification. ACS Infectious Diseases. v. 7, p. 3224-3240, 2021. Qualis: A1
86.	RANGEL, LUIZ THIBÉRIO ; SOUCY, SHANNON M ; Setubal, João C ; GOGARTEN, JOHANN PETER ; FOURNIER, GREGORY P. An Efficient, Nonphylogenetic Method for Detecting Genes Sharing Evolutionary Signals in Phylogenomic Data Sets. Genome Biology and Evolution. v. 13, p. evab187, 2021. Qualis: A1
87.	RODRIGUES, MURILLO F. ; VIBRANOVSKI, MARIA D. ; COGNI, RODRIGO. Clinal and seasonal changes are correlated in Drosophila melanogaster natural populations. EVOLUTION. v. 75, p. 2042-2054, 2021. Qualis: A1
88.	RODRIGUEZ CARNERO, LUIS ANTONIO ; REIS TEIXEIRA, ANDRÉ AZEVEDO ; FEN TANG, FENNY HUI ; KURAMOTO, ANDRÉIA ; MANSO ALVES, MARIA JÚLIA ; COLLI, WALTER ; SETUBAL, JOÃO CARLOS ; CUNHA-NETO, EDÉCIO ; Pasqualini, Renata ; Arap, Wadih ; GIORDANO, RICARDO JOSÉ. Protocol for design, construction, and selection of genome phage (gPhage) display libraries. STAR Protocols. v. 2, p. 100936, 2021. Qualis: Não identificado (STAR PROTOCOLS)
89.	ROELA, ROSIMEIRE APARECIDA ; VALENTE, GABRIEL VANSUITA ; SHIMIZU, CARLOS ; LOPEZ, ROSSANA VERONICA MENDOZA ; TUCUNDUVA, TATIANA CARDOSO DE MELLO ; FOLGUEIRA, GUILHERME KOIKE ; KATAYAMA, MARIA LUCIA HIRATA ; PETRINI, DANIEL GUSTAVO PELLACANI ; NOVAES, GUILHERME APOLINARIO SILVA ; SERIO, PEDRO ADOLPHO DE MENEZES PACHECO ; MARTA, GUILHERME NADER ; Sameshima, Koichi ; KIM, HAE YONG ; KOIKE FOLGUEIRA, MARIA A. A.. Deep learning algorithm performance in mammography screening: A systematic review and meta-analysis.. Journal of Clinical Oncology. v. 39, p. e13553-e13553, 2021. Qualis: A1
90.	ROSSI, LIANE M. ; GALLO, JEAN MARCEL R. ; MATTOSO, LUIZ H. C. ; Buckeridge, Marcos S. ; LICENCE, PETER ; ALLEN, DAVID T.. Ethanol from Sugarcane and the Brazilian Biomass-Based Energy and Chemicals Sector. ACS Sustainable Chemistry & Engineering. v. 9, p. 4293-4295, 2021. Qualis: A1
91.	ROSSMANN, MAIKE ; THOMAS, ANDREW MALTEZ ; GUIMA, SUZANA SATO ; MARTINS, LAYLA FARAGE ; INDERBITZIN, PATRIK ; KNIGHT-CONNONI, VICTORIA ; DA SILVA, ALINE MARIA ; Setubal, João C.. Microbiomes of Field-Grown Maize and Soybean in Southeastern and Central Brazil Inferred by High-Throughput 16S and Internal Transcribed Spacer Amplicon Sequencing. Microbiology Resource Announcements. v. 10, p. e00528-21, 2021. Qualis: C
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93.	SANTIAGO-CARVALHO, IGOR ; ALMEIDA-SANTOS, GISLANE DE ; BOMFIM, CAIO CÉSAR BARBOSA ; SOUZA, PAULA CAROLINA DE ; SILVA, JUAN CARLO SANTOS E ; MELO, BRUNO MARCEL SILVA DE ; AMARAL, EDUARDO PINHEIRO ; CIONE, MARCOS VINÍCIOS PINHEIRO ; LASUNSKAIA, ELENA ; HIRATA, MARIO HIROYUKI ; ALVES-FILHO, JOSÉ CARLOS FARIAS ; Nakaya, Helder Imoto ; ALVAREZ, JOSÉ MARIA ; D?IMPÉRIO LIMA, MARIA REGINA. P2x7 Receptor Signaling Blockade Reduces Lung Inflammation and Necrosis During Severe Experimental Tuberculosis. Frontiers in Cellular and Infection Microbiology. v. 11, p. 1, 2021. Qualis: A1
94.	SANTORO, FRANCESCO ; DONATO, ALESSIA ; LUCCHESI, SIMONE ; SORGI, SARA ; GERLINI, ALICE ; HAKS, MARIELLE ; OTTENHOFF, TOM ; GONZALEZ-DIAS, PATRICIA ; CONSORTIUM, VSV-EBOVAC ; CONSORTIUM, VSV-EBOPLUS ; NAKAYA, HELDER ; HUTTNER, ANGELA ; SIEGRIST, CLAIRE-ANNE ; MEDAGLINI, DONATA ; POZZI, GIANNI. Human Transcriptomic Response to the VSV-Vectored Ebola Vaccine. Vaccines. v. 9, p. 67, 2021. Qualis: Não identificado (VACCINES)
95.	SANTOS E SILVA, JUAN CARLO ; VASCONCELOS, AMANDA PEREIRA ; NOMA, ISABELLA HARUMI YONEHARA ; NORONHA, NATÁLIA YUMI ; AQUINO, RODRIGO ; GIDDALURU, JEEVAN ; DURÃO, LUIZ ; COSTA-MARTINS, ANDRÉ GUILHERME ; SCHUCH, VIVIANE ; MORAES-VIEIRA, PEDRO M. ; Nakaya, Helder I.. Gene signatures of autopsy lungs from obese patients with COVID-19. CLINICAL NUTRITION ESPEN. v. 44, p. 475-478, 2021. Qualis: B2
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97.	SCARCELLA, ANA SÍLVIA DE ALMEIDA ; PASIN, THIAGO MACHADO ; DE OLIVEIRA, TÁSSIO BRITO ; DE LUCAS, ROSYMAR COUTINHO ; FERREIRA-NOZAWA, MONICA STROPA ; FREITAS, EMANUELLE NEIVERTH DE ; VICI, ANA CLAUDIA ; BUCKERIDGE, MARCOS SILVEIRA ; MICHELIN, MICHELE ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Saccharification of different sugarcane bagasse varieties by enzymatic cocktails produced by Mycothermus thermophilus and Trichoderma reesei RP698 cultures in agro-industrial residues. ENERGY. v. 226, p. 120360, 2021. Qualis: A1
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99.	SILVA, CAMILA MEIRELLES ; WANDERLEY, CARLOS W. S. ; VERAS, FLAVIO P ; SONEGO, FABIANE ; NASCIMENTO, DANIELE CARVALHO ; GONÇALVES, AUGUSTO V ; MARTINS, TIMNA V ; COLÓN, DAVID F ; BORGES, VANESSA F ; BRAUER, VERÔNICA SOARES ; DAMASCENO, LUIS EDUARDO ALVES ; SILVA, KATIUSSIA P ; TOLLER-KAWAHISA, JULIANA ESCHER ; BATAH, SABRINA S ; SOUZA, ANA LETÍCIA J ; MONTEIRO, VALTER V S ; OLIVEIRA, ANTONIO EDSON R ; DONATE, PAULA B ; ZOPPI, DANIEL ; NAKAYA, H. I. ; et.al. Gasdermin D inhibition prevents multiple organ dysfunction during sepsis by blocking NET formation. BLOOD. v. 1, p. 1, 2021. Qualis: A1
100.	SILVA-FILHO, JOÃO LUIZ ; DOS-SANTOS, JOÃO CK ; JUDICE, CARLA C ; BERALDI, DARIO ; VENUGOPAL, KANNAN ; DE LIMA, DIOGENES ; NAKAYA, HELDER ; PAULA, ERICH EV ; COSTA PINTO LOPES, STEFANIE ; LACERDA, MARCUS VG ; MARTI, MATTHIAS ; COSTA, FABIO TM. Total parasite biomass but not peripheral parasitaemia is associated with endothelial and haematological perturbations in Plasmodium vivax patients. eLife. v. 10, p. 1, 2021. Qualis: A1
101.	SILVEIRA, GILBERT O. ; AMARAL, MURILO S. ; COELHO, HELENA S. ; MACIEL, LUCAS F. ; PEREIRA, ADRIANA S. A. ; OLBERG, GIOVANNA G. O. ; Miyasato, Patricia A. ; NAKANO, ELIANA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Assessment of reference genes at six different developmental stages of Schistosoma mansoni for quantitative RT-PCR. Scientific Reports. v. 11, p. 16816, 2021. Qualis: A2
102.	SKALICKÝ, TOMÁ? ; Alves, João M. P. ; MORAIS, ANDERSON C. ; RE'NAROVÁ, JANA ; BUTENKO, ANZHELIKA ; LUKE?, JULIUS ; Serrano, Myrna G. ; Buck, Gregory A. ; Teixeira, Marta M. G. ; Camargo, Erney P. ; SANDERS, MANDY ; COTTON, JAMES A. ; YURCHENKO, VYACHESLAV ; KOSTYGOV, ALEXEI Y.. Endosymbiont Capture, a Repeated Process of Endosymbiont Transfer with Replacement in Trypanosomatids Angomonas spp.. PATHOGENS. v. 10, p. 702, 2021. Qualis: A2
103.	SOARES, DOUGLAS M. M. ; ATUM, SAMIR V. F. ; BECHARA, ETELVINO J. H. ; Setubal, João C. ; STEVANI, CASSIUS V. ; FREIRE, RENATO S.. Exploring the Microbiota of the Guarapiranga Water Reservoir With Long-Read Sequencing Technology. FRONTIERS IN MARINE SCIENCE. v. 8, p. 791101, 2021. Qualis: A2
104.	SOUSA'BAENA, MARIANE S ; HERNANDES-LOPES, JOSÉ ; Van Sluys, Marie-Anne. Reaching the top through a tortuous path: helical growth in climbing plants. CURRENT OPINION IN PLANT BIOLOGY. v. 59, p. 101982, 2021. Qualis: A1
105.	TAHIRA, ANA ; Marques, Fernanda ; LISBOA, BIANCA ; FELTRIN, ARTHUR ; BARBOSA, ANDRÉ ; DE OLIVEIRA, KÁTIA CRISTINA ; DE BRAGANÇA PEREIRA, CARLOS ALBERTO ; LEITE, RENATA ; GRINBERG, LEA ; SUEMOTO, CLAUDIA ; DE LUCENA FERRETTI-REBUSTINI, RENATA ELOAH ; PASQUALUCCI, CARLOS AUGUSTO ; JACOB-FILHO, WILSON ; BRENTANI, HELENA ; PALHA, JOANA ALMEIDA. Are the 50?s, the transition decade, in choroid plexus aging?. GeroScience. v. 43, p. 225-237, 2021. Qualis: A2
106.	TAHIRA, ANA C. ; VERJOVSKI'ALMEIDA, SERGIO ; FERREIRA, SERGIO T.. Dementia is an age-independent risk factor for severity and death in COVID-19 inpatients. Alzheimers & Dementia. v. 17, p. 1818-1831, 2021. Qualis: A1 (ALZHEIMER'S & DEMENTIA)
107.	TAN, YONGJUN ; WANG, CINDY ; SCHNEIDER, THERESA ; LI, HUAN ; de SOUZA, Robson Francisco ; TANG, XUEMING ; SWISHER GRIMM, KYLIE D. ; HSIEH, TZUNG-FU ; WANG, XU ; LI, XU ; ZHANG, DAPENG. Comparative Phylogenomic Analysis Reveals Evolutionary Genomic Changes and Novel Toxin Families in Endophytic Pathogens. MICROBIOLOGY SPECTRUM. v. 9, p. e00509-21, 2021. Qualis: A2
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109.	TEN-CATEN, FELIPE ; GONZALEZ-DIAS, PATRÍCIA ; CASTRO, ÍCARO ; OGAVA, RODRIGO L.T. ; GIDDALURU, JEEVAN ; SILVA, JUAN CARLO S. ; MARTINS, FELIPE ; GONÇALVES, ANDRÉ N.A. ; COSTA-MARTINS, ANDRÉ G. ; Araujo, José D. ; VIEGAS, ANA CAROLINA ; CUNHA, FERNANDO Q. ; FARSKY, SANDRA ; BOZZA, FERNANDO A. ; LEVIN, ANNA S. ; PANNARAJ, PIA S. ; DE SILVA, THUSHAN I. ; MINOPRIO, PAOLA ; PINHEIRO DA SILVA, FABIANO ; NAKAYA, H. I. ; et.al. In-depth analysis of laboratory parameters reveals the interplay between sex, age, and systemic inflammation in individuals with COVID-19. INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES. v. 105, p. 579-587, 2021. Qualis: A3
110.	VIANELLO, ELEONORA ; GONZALEZ-DIAS, PATRICIA ; VAN VEEN, SUZANNE ; ENGELE, CARMEN G ; QUINTEN, EDWIN ; MONATH, THOMAS P ; MEDAGLINI, DONATA ; SANTORO, FRANCESCO ; HUTTNER, ANGELA ; DUBEY, SHERI ; EICHBERG, MICHAEL ; NDUNGU, FRANCIS M ; KREMSNER, PETER G ; ESSONE, PAULIN N ; AGNANDJI, SELIDJI TODAGBE ; SIEGRIST, CLAIRE-ANNE ; Nakaya, Helder I ; OTTENHOFF, TOM H M ; HAKS, MARIËLLE C ; AGNANDIJ, SELIDIJ T ; et.al. Transcriptomic signatures induced by the Ebola virus vaccine rVSV-G-ZEBOV-GP in adult cohorts in Europe, Africa, and North America: a molecular biomarker study. Lancet Microbe. v. 1, p. 1, 2021. Qualis: Não identificado (LANCET MICROBE)
111.	VIDEIRA, ALEXANDRE ; BECKEDORFF, FELIPE C. ; DASILVA, LUCAS F. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. PVT1 signals an androgen-dependent transcriptional repression program in prostate cancer cells and a set of the repressed genes predicts high-risk tumors. Cell Communication and Signaling. v. 19, p. 5, 2021. Qualis: A2
112.	VIEIRA, LUCAS MACIEL ; JORGE, NATASHA ANDRESSA NOGUEIRA ; DE SOUSA, JOÃO BATISTA ; SETUBAL, JOÃO CARLOS ; Stadler, Peter F. ; WALTER, MARIA EMÍLIA MACHADO TELLES. Competing Endogenous RNA in Colorectal Cancer: An Analysis for Colon, Rectum, and Rectosigmoid Junction. FRONTIERS IN ONCOLOGY. v. 11, p. 1670, 2021. Qualis: A2
113.	VIEIRA, PLINIO S. ; BONFIM, ISABELA M. ; ARAUJO, EVANDRO A. ; MELO, RICARDO R. ; LIMA, AUGUSTO R. ; FESSEL, MELISSA R. ; PAIXÃO, DOUGLAS A. A. ; PERSINOTI, GABRIELA F. ; ROCCO, SILVANA A. ; LIMA, TATIANI B. ; PIROLLA, RENAN A. S. ; MORAIS, MARIANA A. B. ; CORREA, JESSICA B. L. ; ZANPHORLIN, LETICIA M. ; DIOGO, JOSE A. ; LIMA, EVANDRO A. ; GRANDIS, Adriana ; Buckeridge, Marcos S. ; GOZZO, FABIO C. ; BENEDETTI, CELSO E. ; et.al. Xyloglucan processing machinery in Xanthomonas pathogens and its role in the transcriptional activation of virulence factors. Nature Communications. v. 12, p. 4049, 2021. Qualis: A1
114.	XIA, SHENGQIAN ; VANKUREN, NICHOLAS W. ; CHEN, CHUNYAN ; ZHANG, LI ; KEMKEMER, CLAUSE ; SHAO, YI ; JIA, HANGXING ; LEE, UNJIN ; ADVANI, ALEXANDER S. ; GSCHWEND, ANDREA ; VIBRANOVSKI, MARIA D. ; CHEN, SIDI ; ZHANG, YONG E. ; LONG, MANYUAN. Genomic analyses of new genes and their phenotypic effects reveal rapid evolution of essential functions in Drosophila development. PLoS Genetics. v. 17, p. e1009654, 2021. Qualis: A1
115.	XU, TIANHAO ; SCHUTTE, ALEXANDER ; JIMENEZ, LEANDRO ; GONÇALVES, ANDRE N. A. ; KELLER, ASHLEIGH ; PIPKIN, MATTHEW E. ; Nakaya, Helder I. ; PEREIRA, RENATA M. ; MARTINEZ, GUSTAVO J.. Kdm6b Regulates the Generation of Effector CD8 + T Cells by Inducing Chromatin Accessibility in Effector-Associated Genes. JOURNAL OF IMMUNOLOGY. v. 206, p. 2170-2183, 2021. Qualis: C
116.	ZUCCOLI, GIULIANA S. ; REIS-DE-OLIVEIRA, GUILHERME ; GARBES, BRUNA ; FALKAI, PETER ; SCHMITT, ANDREA ; Nakaya, Helder I. ; MARTINS-DE-SOUZA, DANIEL. Linking proteomic alterations in schizophrenia hippocampus to NMDAr hypofunction in human neurons and oligodendrocytes. EUROPEAN ARCHIVES OF PSYCHIATRY AND CLINICAL NEUROSCIENCE. v. 1, p. 1, 2021. Qualis: A2

2020

1.	AGUIAR, RENATO S. ; POHL, FABIO ; MORAIS, GUILHERME L. ; NOGUEIRA, FABIO C. S. ; CARVALHO, JOSEANE B. ; GUIDA, LETÍCIA ; ARGE, LUIS W. P. ; MELO, ADRIANA ; MOREIRA, MARIA E. L. ; CUNHA, DANIELA P. ; GOMES, LEONARDO ; PORTARI, ELYZABETH A. ; VELASQUEZ, ERIKA ; MELANI, RAFAEL D. ; PEZZUTO, PAULA ; DE CASTRO, FERNANDA L. ; GEDDES, VICTOR E. V. ; GERBER, ALEXANDRA L. ; AZEVEDO, GIRLENE S. ; NAKAYA, H. I. ; et.al. Molecular alterations in the extracellular matrix in the brains of newborns with congenital Zika syndrome. Science Signaling. v. 13, p. eaay6736, 2020. Qualis: A2
2.	AL ASSAL, KARINA ; PRIFTI, EDI ; BELDA, EUGENI ; SALA, PRISCILA ; CLÉMENT, KARINE ; DAO, MARIA-CARLOTA ; DORÉ, JOEL ; LEVENEZ, FLORENCE ; TADDEI, CARLA R. ; FONSECA, DANIELLE CRISTINA ; ROCHA, ILANNA MARQUES ; BALMANT, BIANCA DEPIERI ; THOMAS, ANDREW MALTEZ ; SANTO, MARCO A. ; DIAS-NETO, Emmanuel ; SETUBAL, JOÃO CARLOS ; ZUCKER, JEAN-DANIEL ; BELARMINO, GILIANE ; TORRINHAS, RAQUEL SUSANA ; WAITZBERG, DAN L. ; et.al. Gut Microbiota Profile of Obese Diabetic Women Submitted to Roux-en-Y Gastric Bypass and Its Association with Food Intake and Postoperative Diabetes Remission. Nutrients. v. 12, p. 278, 2020. Qualis: A1
3.	ALVES, WONDER A.L. ; Gobber, Charles F. ; J. SILVA, DENNIS ; MORIMITSU, ALEXANDRE ; HASHIMOTO, RONALDO F. ; MARCOTEGUI, BEATRIZ. Image segmentation based on ultimate levelings: from attribute filters to machine learning strategies. PATTERN RECOGNITION LETTERS. v. 133, p. 264-271, 2020. Qualis: A2
4.	AMARAL, MURILO S. ; MACIEL, LUCAS F. ; SILVEIRA, GILBERT O. ; OLBERG, GIOVANNA G. O. ; LEITE, JOÃO V. P. ; IMAMURA, LUCAS K. ; PEREIRA, ADRIANA S. A. ; Miyasato, Patricia A. ; NAKANO, ELIANA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Long non-coding RNA levels can be modulated by 5-azacytidine in Schistosoma mansoni. Scientific Reports. v. 10, p. 21565, 2020. Qualis: A2
5.	Amaral, Murilo Sena ; GOULART, ERNESTO ; CAIRES-JÚNIOR, LUIZ CARLOS ; MORALES-VICENTE, DAVID ABRAHAM ; SOARES-SCHANOSKI, ALESSANDRA ; GOMES, ROSELANE PAIVA ; OLBERG, GIOVANNA GONÇALVES DE OLIVEIRA ; ASTRAY, RENATO MANCINI ; KALIL, JORGE E. ; Zatz, Mayana ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Differential gene expression elicited by ZIKV infection in trophoblasts from congenital Zika syndrome discordant twins. PLoS Neglected Tropical Diseases. v. 14, p. e0008424, 2020. Qualis: A1
6.	ARNS, THAIS ; ANTUNES, DINLER A. ; ABELLA, JAYVEE R. ; RIGO, MAURÍCIO M. ; KAVRAKI, LYDIA E. ; Giuliatti, Silvana ; DONADI, EDUARDO A.. Structural Modeling and Molecular Dynamics of the Immune Checkpoint Molecule HLA-G. Frontiers in Immunology. v. 11, p. 1-13, 2020. Qualis: A1
7.	BARBOSA, MAYSA S. ; ALVES, R. ; REZENDE, IZADORA S. ; PEREIRA, S. ; CAMPOS, GUILHERME B. ; FREITAS, L. ; CHOPRA-DEWASTHALY, R. ; FERREIRA, L. C. ; GUIMARÃES, A. M. S. ; MARQUES, L. M. ; TIMENETSKY, J.. Novel antigenic proteins of Mycoplasma agalactiae as potential vaccine and serodiagnostic candidates. VETERINARY MICROBIOLOGY. v. 251, p. 10886, 2020.Qualis: A1
8.	BONEZI, VIVIAN ; CATANEO, ALLAN H. D. ; BRANQUINHO, MARYANA S. F. ; SILVA, MAYSA B. B. ; GONZALEZ-DIAS, PATRICIA ; PEREIRA, SAMUEL S. ; FERREIRA, LUÍS C. DE SOUZA ; Nakaya, Helder I. ; CAMPA, ANA ; WOWK, PRYSCILLA F. ; SILVEIRA, EDUARDO L. V.. Flavivirus-Mediating B Cell Differentiation Into Antibody-Secreting Cells in Humans Is Associated With the Activation of the Tryptophan Metabolism. Frontiers in Immunology. v. 11, p. 1, 2020. Qualis: A1
9.	BORDINI, D. ; PAULA, C. S. ; CUNHA, G. R. ; CAETANO, S. C. ; BAGAIOLO, L. F. ; RIBEIRO, T. C. ; MARTONE, M. C. C. ; PORTOLESE, J. ; MOYA, A. C. ; BRUNONI, D. ; BOSA, C. ; BRENTANI, H. ; COGO'MOREIRA, H. ; JESUS MARI, J.. A randomised clinical pilot trial to test the effectiveness of parent training with video modelling to improve functioning and symptoms in children with autism spectrum disorders and intellectual disability. JOURNAL OF INTELLECTUAL DISABILITY RESEARCH. v. 64, p. 629-643, 2020. Qualis: A1
10.	BORGES, JÉSSICA BASSANI ; OLIVEIRA, VICTOR FERNANDES DE ; FERREIRA, GLAUCIO MONTEIRO ; LOS, BRUNA ; BARBOSA, THAIS KRISTINI ALMENDROS AFONSO ; MARÇAL, ELISANGELA DA SILVA RODRIGUES ; DAGLI-HERNANDEZ, CAROLINA ; DE FREITAS, RENATA CAROLINE COSTA ; BORTOLIN, RAUL HERNANDES ; MORI, AUGUSTO AKIRA ; HIRATA, THIAGO DOMINGUEZ CRESPO ; NAKAYA, HELDER TAKASHI IMOTO ; BASTOS, GISELE MEDEIROS ; THUROW, HELENA STRELOW ; GONÇALVES, RODRIGO MARQUES ; ARAUJO, DANIEL BRANCO DE ; ZATZ, HENRY PAULO ; BERTOLAMI, ADRIANA ; FALUDI, ANDRÉ ARPAD ; BERTOLAMI, MARCELO CHIARA ; et.al. Genomics, epigenomics and pharmacogenomics of Familial Hypercholesterolemia (FHBGEP): A study protocol. Research in Social & Administrative Pharmacy. v. 1, p. 1, 2020. Qualis: A3
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18.	Capuani, Ligia ; BIERRENBACH, ANA LUIZA ; ALENCAR, AIRLANE PEREIRA ; MENDRONE, ALFREDO ; Ferreira, João Eduardo ; Custer, Brian ; RIBEIRO, ANTONIO LUIZ P. ; SABINO, ESTER CERDEIRA. Correction: Mortality among blood donors seropositive and seronegative for Chagas disease (1996-2000) in São Paulo, Brazil: A death certificate linkage study. PLoS Neglected Tropical Diseases. v. 14, p. e0008871, 2020. Qualis: A1
19.	CASTILLO, WILLIAN ORLANDO ; PALOMINO, NILZA VELASCO ; TAKAHASHI, CATARINA SATIE ; Giuliatti, Silvana. Genistein and Galantamine Combinations Decrease β-Amyloid Peptide (1-42)-Induced Genotoxicity and Cell Death in SH-SY5Y Cell Line: an In Vitro and In Silico Approach for Mimic of Alzheimer?s Disease. NEUROTOXICITY RESEARCH. v. 38, p. 691-706, 2020. Qualis: A3
20.	CASTRO E SILVA, MARCOS ARAÚJO ; NUNES, KELLY ; LEMES, RENAN BARBOSA ; MAS-SANDOVAL, ÀLEX ; GUERRA AMORIM, CARLOS EDUARDO ; KRIEGER, JOSE EDUARDO ; MILL, JOSÉ GERALDO ; SALZANO, FRANCISCO MAURO ; Bortolini, Maria Cátira ; PEREIRA, ALEXANDRE DA COSTA ; COMAS, DAVID ; Hünemeier, Tábita. Genomic insight into the origins and dispersal of the Brazilian coastal natives. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 00, p. 201909075, 2020. Qualis: A1
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22.	COELHO, VERÔNICA ; CABRAL, AMANDA ; MARTINS, FELIPE ; ARCURI, HELEN ; CARMONA, PRISCILA ; MORAES-VIEIRA, PEDRO MANOEL MENDES ; LEMOS, FRANCINE ; FONSECA, SIMONE G. ; DE FARIA, ANA CAETANO ; MONTEIRO, SANDRA MARIA ; NORONHA, IRENE ; SAITOVITCH, DAVID ; NAKAYA, HELDER ; FERREIRA, LUDMILA RODRIGUES PINTO ; KALIL, JORGE. Toward an Integrated View of Operational Tolerance in Human Renal Transplantation: A Systems Biology Perspective. CRITICAL REVIEWS IN IMMUNOLOGY. v. 40, p. 379-403, 2020. Qualis: B2
23.	COUTINHO CARNEIRO, VITOR ; DE ABREU DA SILVA, ISABEL CAETANO ; Amaral, Murilo Sena ; PEREIRA, ADRIANA S. A. ; SILVEIRA, GILBERT OLIVEIRA ; PIRES, DAVID DA SILVA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; DEKKER, FRANK J. ; ROTILI, DANTE ; MAI, ANTONELLO ; LOPES-TORRES, EDUARDO JOSÉ ; ROBAA, DINA ; SIPPL, WOLFGANG ; Pierce, Raymond J. ; BORRELLO, M. TERESA ; GANESAN, A. ; LANCELOT, JULIEN ; THIENGO, SILVANA ; FERNANDEZ, MONICA AMMON ; et.al. Pharmacological inhibition of lysine-specific demethylase 1 (LSD1) induces global transcriptional deregulation and ultrastructural alterations that impair viability in Schistosoma mansoni. PLoS Neglected Tropical Diseases. v. 14, p. e0008332, 2020. Qualis: A1
24.	Creighton, Rachel ; SCHUCH, VIVIANE ; URBANSKI, ALYSSON H. ; GIDDALURU, JEEVAN ; COSTA-MARTINS, ANDRE G. ; Nakaya, Helder I.. Network vaccinology. SEMINARS IN IMMUNOLOGY. v. 1, p. 101420, 2020. Qualis: A1
25.	de Morais, H. A. ; Santos, A.P. ; NASCIMENTO, N. C. ; KMETIUK, L. B. ; BRANDAO, P. E. ; GUIMARÃES, A. M. S. ; PETTAN-BREWER, C. ; BIONDO, A. W.. Natural infection by SARS-CoV-2 in companion animals: a review of case reports and current evidence of their role in the epidemiology of COVID-19. FRONTIERS IN VETERINARY SCIENCE. v. 591216, p. 823, 2020. Qualis: A1
26.	DE OLIVEIRA, THAÍS CRIPPA ; CORDER, RODRIGO M. ; EARLY, ANGELA ; RODRIGUES, PRISCILA T. ; LADEIA-ANDRADE, SIMONE ; Alves, João Marcelo P. ; NEAFSEY, DANIEL E. ; FERREIRA, MARCELO U.. Population genomics reveals the expansion of highly inbred Plasmodium vivax lineages in the main malaria hotspot of Brazil. PLoS Neglected Tropical Diseases. v. 14, p. e0008808, 2020. Qualis: A1
27.	de SOUZA, J. B. ; ALMEIDA-SOUZA, H. O. ; ZAINI, P. A. ; ALVES, M. N. ; SOUZA, A. G. ; PIERRY, P. M. ; da Silva, Aline M. ; GOULART, L. R. ; DANDEKAR, A. M. ; NASCIMENTO, R.. Xylella fastidiosa subsp. pauca strains Fb7 and 9a5c from citrus display differential behavior, secretome, and plant virulence. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 21, p. 6769, 2020. Qualis: Não identificado (PAUCA STRAINS FB7 AND 9A5C FROM CITRUS DISPLAY DIFFERENTIAL BEHAVIOR, SECRETOME, AND PLANT VIRULENCE. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES)
28.	DIAS DA PURIFICAÇÃO, ALINE ; MARINS DE AZEVEDO, NATHALIA ; GUARANY DE ARAUJO, GABRIEL ; FRANCISCO DE SOUZA, ROBSON ; RODRIGUES GUZZO, CRISTIANE. The World of Cyclic Dinucleotides in Bacterial Behavior. MOLECULES. v. 25, p. 2462, 2020. Qualis: A2
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30.	FARHAT, LUIS C. ; BRENTANI, HELENA ; POLANCZYK, GUILHERME V.. Polygenic risk as a biomarker for ADHD. JOURNAL OF THE AMERICAN ACADEMY OF CHILD AND ADOLESCENT PSYCHIATRY. v. 59, p. 926-928, 2020. Qualis: A1
31.	FATORI, DANIEL ; ARGEU, ADRIANA ; BRENTANI, HELENA ; CHIESA, ANNA ; FRACOLLI, LISLAINE ; MATIJASEVICH, ALICIA ; MIGUEL, EURIPEDES C ; POLANCZYK, GUILHERME. Maternal Parenting Electronic Diary in the Context of a Home Visit Intervention for Adolescent Mothers in an Urban Deprived Area of São Paulo, Brazil: Randomized Controlled Trial. JMIR mHealth and uHealth. v. 8, p. e13686, 2020. Qualis: A3 (JMIR MHEALTH UHEALTH)
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33.	GENEVCIUS, BRUNO C. ; TORRES, TATIANA T.. De novo construction of a transcriptome for the stink bug crop pest Chinavia impicticornis during late development. Gigabyte. v. 2020, p. 1-7, 2020. Qualis: Não identificado (GIGABYTE)
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35.	GRANDIS, ADRIANA ; ARENQUE-MUSA, BRUNA C. ; MARTINS, MARINA C. M. ; MACIEL, THAIS OLIVAR ; SIMISTER, RACHAEL ; GÓMEZ, LEONARDO D. ; Buckeridge, Marcos S.. Senna reticulata: a Viable Option for Bioenergy Production in the Amazonian Region. BioEnergy Research. v. XX, p. on line, 2020. Qualis: A1
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38.	LAUGIER, LAURIE ; FERREIRA, LUDMILA RODRIGUES PINTO ; FERREIRA, FREDERICO MORAES ; CABANTOUS, SANDRINE ; FRADE, AMANDA FARAGE ; NUNES, JOAO PAULO ; RIBEIRO, RAFAEL ALMEIDA ; BROCHET, PAULINE ; TEIXEIRA, PRISCILA CAMILLO ; SANTOS, RONALDO HONORATO BARROS ; BOCCHI, EDIMAR A. ; BACAL, FERNANDO ; CÂNDIDO, DARLAN DA SILVA ; MASO, VANESSA ESCOLANO ; Nakaya, Helder I. ; KALIL, JORGE ; CUNHA-NETO, EDECIO ; CHEVILLARD, CHRISTOPHE. miRNAs may play a major role in the control of gene expression in key pathobiological processes in Chagas disease cardiomyopathy. PLoS Neglected Tropical Diseases. v. 14, p. e0008889, 2020. Qualis: A1
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44.	LOCOSSELLI, GIULIANO MASELLI ; BRIENEN, ROEL J. W. ; LEITE, MELINA DE SOUZA ; GLOOR, MANUEL ; KROTTENTHALER, STEFAN ; OLIVEIRA, ALEXANDRE A. DE ; BARICHIVICH, JONATHAN ; ANHUF, DIETER ; CECCANTINI, GREGORIO ; SCHÖNGART, JOCHEN ; BUCKERIDGE, MARCOS. Global tree-ring analysis reveals rapid decrease in tropical tree longevity with temperature. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 117, p. 33358-33364, 2020. Qualis: A1
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46.	LY, LINDSEY K. ; ROWLES, JOE L. ; PAUL, HANS MÜLLER ; ALVES, JOÃO M.P. ; YEMM, CAMDON ; WOLF, PATRICIA M. ; DEVENDRAN, SARAVANAN ; HUDSON, MATTHEW E. ; MORRIS, DAVID J. ; ERDMAN, JOHN W. ; RIDLON, JASON M.. Bacterial steroid-17,20-desmolase is a taxonomically rare enzymatic pathway that converts prednisone to 1,4-androstanediene-3,11,17-trione, a metabolite that causes proliferation of prostate cancer cells. JOURNAL OF STEROID BIOCHEMISTRY AND MOLECULAR BIOLOGY. v. 199, p. 105567, 2020. Qualis: A2
47.	LÜSCHER DIAS, THOMAZ ; SCHUCH, VIVIANE ; BELTRÃO-BRAGA, PATRÍCIA CRISTINA BALEEIRO ; MARTINS-DE-SOUZA, DANIEL ; Brentani, Helena Paula ; FRANCO, GLÓRIA REGINA ; NAKAYA, HELDER IMOTO. Drug repositioning for psychiatric and neurological disorders through a network medicine approach. Translational Psychiatry. v. 10, p. 141, 2020. Qualis: A1
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49.	MACIEIRA, BERNARDO PRETTI BECACICI ; LOCOSSELLI, GIULIANO MASELLI ; BUCKERIDGE, MARCOS SILVEIRA ; HARTMANN, HENRIK ; CUZZUOL, GERALDO ROGÉRIO FAUSTINI. Stem and leaf functional traits allow successional classification in six pioneer and non-pioneer tree species in Tropical Moist Broadleaved Forests. ECOLOGICAL INDICATORS. v. 113, p. 106254, 2020. Qualis: A1
50.	MACIEL, LUCAS F. ; MORALES-VICENTE, DAVID A. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Dynamic Expression of Long Non-Coding RNAs Throughout Parasite Sexual and Neural Maturation in Schistosoma japonicum. Non-Coding RNA. v. 6, p. 15, 2020. Qualis: B2
51.	MARTINS, P. M. ; LO-MAN-HUNG, N. F. ; TORRES, T. T.. Evolution of Spiders and Silk Spinning: Mini Review of the Morphology, Evolution, and Development of Spiders? Spinnerets. FRONTIERS IN ECOLOGY AND EVOLUTION. v. 8, p. 109, 2020. Qualis: A2
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54.	MONTEIRO, LUMMY MARIA OLIVEIRA ; VICI, ANA CLAUDIA ; PINHEIRO, MATHEUS PINTO ; HEINEN, PAULO RICARDO ; DE OLIVEIRA, ARTHUR HENRIQUE CAVALCANTE ; WARD, RICHARD JOHN ; PRADE, ROLF ALEXANDER ; Buckeridge, Marcos S. ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. A Highly Glucose Tolerant ß-Glucosidase from Malbranchea pulchella (MpBg3) Enables Cellulose Saccharification. Scientific Reports. v. 10, p. 1-12, 2020. Qualis: A2
55.	MORIMITSU, ALEXANDRE ; PASSAT, NICOLAS ; ALVES, WONDER A.L. ; HASHIMOTO, RONALDO F.. Efficient component-hypertree construction based on hierarchy of partitions. PATTERN RECOGNITION LETTERS. v. 135, p. 30-37, 2020. Qualis: A2
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57.	NASCIMENTO, CAMILA ; NUNES, PAULA VILLELA ; SUEMOTO, CLAUDIA KIMIE ; RODRIGUEZ, ROBERTA DIEHL ; LEITE, RENATA ELAINE PARAIZO ; GRINBERG, LEA TENENHOLZ ; PASQUALUCCI, CARLOS AUGUSTO ; NITRINI, RICARDO ; JACOB-FILHO, WILSON ; Brentani, Helena Paula ; LAFER, BENY. Differential levels of inflammatory and neuroendocrine markers in the hippocampus and anterior cingulate cortex of bipolar disorder subjects: A post-mortem study. BRAIN BEHAVIOR AND IMMUNITY. v. 90, p. 286-293, 2020. Qualis: A1 (BRAIN, BEHAVIOR, AND IMMUNITY)
58.	NASCIMENTO, FERNANDA SAYURI DO ; SUZUKI, MILENA OLIVEIRA ; TABA, JOÃO VICTOR ; DE MATTOS, VITORIA CARNEIRO ; PIPEK, LEONARDO ZUMERKORN ; D?ALBUQUERQUE, EUGÊNIA MACHADO CARNEIRO ; IUAMOTO, LEANDRO ; MEYER, ALBERTO ; ANDRAUS, WELLINGTON ; PINHO, JOÃO RENATO REBELLO ; DE MOURA, EDUARDO GUIMARÃES HOURNEAUX ; SETUBAL, JOÃO CARLOS ; CARNEIRO-D?ALBUQUERQUE, LUIZ AUGUSTO. Analysis of biliary MICRObiota in hepatoBILIOpancreatic diseases compared to healthy people [MICROBILIO]: Study protocol. PLoS One. v. 15, p. e0242553, 2020. Qualis: A1
59.	OLIVEIRA, DANYLLO ; MORALES-VICENTE, DAVID A ; AMARAL, MURILO S ; LUZ, LIVIA ; SERTIÉ, ANDREA L ; LEITE, FELIPE S ; NAVARRO, CLAUDIA ; KAID, CAROLINI ; ESPOSITO, JOYCE ; GOULART, ERNESTO ; CAIRES, LUIZ ; ALVES, LUCIANA M ; MELO, UIRÁ S ; FIGUEIREDO, THALITA ; MITNE-NETO, MIGUEL ; OKAMOTO, OSWALDO K ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Zatz, Mayana. Different gene expression profiles in iPSC-derived motor neurons from ALS8 patients with variable clinical courses suggest mitigating pathways for neurodegeneration. HUMAN MOLECULAR GENETICS. v. 29, p. 1465-1475, 2020. Qualis: A1
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2019

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5.	BARROS-CARVALHO, GESIELE ALMEIDA ; HUNGRIA, MARIANGELA ; LOPES, FABRÍCIO MARTINS ; VAN SLUYS, MARIE-ANNE. Brazilian-adapted soybean Bradyrhizobium strains uncover IS elements with potential impact on biological nitrogen fixation. FEMS Microbiology Letters. v. 366, p. fnz046, 2019. Qualis: B2
6.	BRAGA, STEFANIA PEGORIN ; DOS SANTOS, ALEXANDRE PAES ; PAGANINI, THAIS ; BARBOSA, DEIBS ; EPAMINO, GEORGE WILLIAN CONDOMITTI ; MORAIS, CARLOS ; MARTINS, LAYLA FARAGE ; SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS ; VALLIM, MARCELO AFONSO ; PASCON, RENATA CASTIGLIONI. First report of cis-1,4-polyisoprene degradation by Gordonia paraffinivorans. BRAZILIAN JOURNAL OF MICROBIOLOGY. v. 19, p. 1051-1062, 2019. Qualis: B1
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58.	RODY, HUGO V. S. ; BOMBARDELLI, RENATO G. H. ; CRESTE, SILVANA ; CAMARGO, LUÍS E. A. ; Van Sluys, Marie-Anne ; MONTEIRO-VITORELLO, CLAUDIA B.. Genome survey of resistance gene analogs in sugarcane: genomic features and differential expression of the innate immune system from a smut-resistant genotype. BMC GENOMICS. v. 20, p. 809, 2019. Qualis: A2
59.	SAMOGY-COSTA, CLAUDIA ISMANIA ; VARELLA-BRANCO, ELISA ; MONFARDINI, FREDERICO ; FERRAZ, HELEN ; FOCK, RODRIGO AMBRÓSIO ; BARBOSA, RICARDO HENRIQUE ALMEIDA ; PESSOA, ANDRÉ LUIZ SANTOS ; PEREZ, ANA BEATRIZ ALVAREZ ; LOURENÇO, NAILA ; VIBRANOVSKI, MARIA ; KREPISCHI, ANA ; ROSENBERG, CARLA ; PASSOS-BUENO, MARIA RITA. A Brazilian cohort of individuals with Phelan-McDermid syndrome: genotype-phenotype correlation and identification of an atypical case. Journal of Neurodevelopmental Disorders. v. 11, p. 13, 2019. Qualis: Não identificado (JOURNAL OF NEURODEVELOPMENTAL DISORDERS)
60.	SCHRODER, WAYNE A. ; HIRATA, THIAGO D. ; LE, THUY T. ; Gardner, Joy ; BOYLE, GLEN M. ; ELLIS, JONATHAN ; NAKAYAMA, ERI ; PATHIRANA, DILAN ; Nakaya, Helder I. ; Suhrbier, Andreas. SerpinB2 inhibits migration and promotes a resolution phase signature in large peritoneal macrophages. Scientific Reports. v. 9, p. 12421, 2019. Qualis: A2
61.	Sforça, Danilo Augusto ; VAUTRIN, SONIA ; CARDOSO-SILVA, CLAUDIO BENICIO ; MANCINI, MELINA CRISTINA ; ROMERO-DA CRUZ, MARÍA VICTORIA ; PEREIRA, GUILHERME DA SILVA ; CONTE, MÔNICA ; BELLEC, ARNAUD ; DAHMER, NAIR ; FOURMENT, JOELLE ; RODDE, NATHALIE ; SLUYS MAV. ; VICENTINI, RENATO ; GARCIA, ANTÔNIO AUGUSTO FRANCO ; FORNI-MARTINS, ELIANA REGINA ; CARNEIRO, MONALISA SAMPAIO ; HOFFMANN, HERMANN PAULO ; PINTO, Luciana Rossini ; LANDELL, MARCOS GUIMARÃES DE ANDRADE ; VINCENTZ, MICHEL ; et.al. Gene Duplication in the Sugarcane Genome: A Case Study of Allele Interactions and Evolutionary Patterns in Two Genic Regions. Frontiers in Plant Science. v. 10, p. 1-15, 2019. Qualis: A1
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63.	SILVA, DENNIS J. ; ALVES, WONDER A.L. ; HASHIMOTO, RONALDO FUMIO. Incremental bit-quads count in component trees: theory, algorithms, and optimization. PATTERN RECOGNITION LETTERS. v. 129, p. 33-40, 2019. Qualis: A2
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66.	SILVA, NATALIA MARIA ; DE OLIVEIRA, ALINE MÁRCIA SILVA ARAÚJO ; PEGORIN, STEFANIA ; GIUSTI, CAMILA ESCANDURA ; FERRARI, VITOR BATISTA ; BARBOSA, DEIBS ; MARTINS, LAYLA FARAGE ; MORAIS, CARLOS ; SETUBAL, JOÃO CARLOS ; VASCONCELLOS, SUZAN PANTAROTO ; DA SILVA, ALINE MARIA ; DE OLIVEIRA, JULIO CEZAR FRANCO ; PASCON, RENATA CASTIGLIONI ; VIANA-NIERO, CRISTINA. Characterization of novel hydrocarbon-degrading Gordonia paraffinivorans and Gordonia sihwensis strains isolated from composting. PLoS One. v. 14, p. e0215396, 2019. Qualis: A1
67.	SILVA-PEREIRA, T. T. ; IKUTA, CÁSSIA YUMI ; ZIMPEL, CRISTINA KRAEMER ; CAMARGO, N. C. S. ; SOUZA, A. F. ; FERREIRA NETO, JOSÉ SOARES ; HEINEMANN, MARCOS BRYAN ; GUIMARÃES, A. M. S.. Genome sequencing of Mycobacterium pinnipedii strains: genetic characterization and evidence of superinfection in a South American sea lion (Otaria flavescens). BMC GENOMICS. v. 20, p. 1030, 2019. Qualis: A2
68.	SOARES-SCHANOSKI, ALESSANDRA ; BAPTISTA CRUZ, NATÁLIA ; DE CASTRO-JORGE, LUÍZA ANTUNES ; DE CARVALHO, RENAN VILLANOVA HOMEM ; SANTOS, CLIOMAR ALVES DOS ; RÓS, NANCY DA ; OLIVEIRA, ÚRSULA ; COSTA, DANUZA DUARTE ; SANTOS, CECÍLIA LUÍZA SIMÕES DOS ; CUNHA, MARIELTON DOS PASSOS ; OLIVEIRA, MARIA LEONOR SARNO ; ALVES, JULIANA CARDOSO ; OCÉA, REGINA ADALVA DE LUCENA COUTO ; RIBEIRO, DANIELLE RODRIGUES ; GONÇALVES, ANDRÉ NICOLAU AQUIME ; GONZALEZ-DIAS, PATRICIA ; Suhrbier, Andreas ; ZANOTTO, PAOLO MARINHO DE ANDRADE ; AZEVEDO, INÁCIO JUNQUEIRA DE ; NAKAYA, H. I. ; et.al. Systems analysis of subjects acutely infected with the Chikungunya virus. PLoS Pathogens. v. 15, p. e1007880, 2019. Qualis: A1
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70.	SOUZA, GLAUCIA MENDES ; VAN SLUYS, MARIE-ANNE ; LEMBKE, CAROLINA GIMILIANI ; LEE, HAYAN ; MARGARIDO, GABRIEL RODRIGUES ALVES ; HOTTA, CARLOS TAKESHI ; GAIARSA, JONAS WEISSMANN ; DINIZ, AUGUSTO LIMA ; OLIVEIRA, MAURO DE MEDEIROS ; FERREIRA, SÁVIO DE SIQUEIRA ; NISHIYAMA, MILTON YUTAKA ; TEN-CATEN, FELIPE ; RAGAGNIN, GEOVANI TOLFO ; ANDRADE, PABLO DE MORAIS ; DE SOUZA, ROBSON FRANCISCO ; NICASTRO, GIANLUCCA GONÇALVES ; PANDYA, RAVI ; KIM, CHANGSOO ; GUO, HUI ; DURHAM, ALAN MITCHELL ; et.al. Assembly of the 373k gene space of the polyploid sugarcane genome reveals reservoirs of functional diversity in the world's leading biomass crop. GigaScience. v. 8, p. 1-18, 2019. Qualis: A1
71.	TAHIRA, ANA CAROLINA ; BARBOSA, ANDRÉ ROCHA ; FELTRIN, ARTHUR SANT'ANNA ; GASTALDI, VINICIUS DAGUANO ; TOLEDO, VICTOR HUGO CALEGARI ; CARVALHO PEREIRA, JOSÉ GERALDO ; LISBOA, BIANCA CRISTINA GARCIA ; SOUZA REIS, VIVIANE NERI ; SANTOS, ANA CECÍLIA FEIO ; Maschietto, Mariana ; BRENTANI, HELENA. Putative contributions of the sex chromosome proteins SOX3 and SRY to neurodevelopmental disorders. AMERICAN JOURNAL OF MEDICAL GENETICS PART B-NEUROPSYCHIATRIC GENETICS. v. 180, p. 390-414, 2019. Qualis: A2 (AMERICAN JOURNAL OF MEDICAL GENETICS. PART B, NEUROPSYCHIATRIC GENETICS)
72.	TANG, FENNY H. F. ; STAQUICINI, FERNANDA I. ; TEIXEIRA, ANDRÉ A. R. ; MICHALOSKI, JUSSARA S. ; NAMIYAMA, GISLENE M. ; TANIWAKI, NOEMI N. ; Setubal, João C. ; DA SILVA, ALINE M. ; SIDMAN, RICHARD L. ; Pasqualini, Renata ; Arap, Wadih ; Giordano, Ricardo J.. A ligand motif enables differential vascular targeting of endothelial junctions between brain and retina. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 116, p. 201809483-2305, 2019. Qualis: A1
73.	TAVARES, EVELINE Q P ; DE SOUZA, AMANDA P ; ROMIM, GRAYCE H ; GRANDIS, ADRIANA ; PLASENCIA, ANNA ; GAIARSA, JONAS W ; GRIMA-PETTENATI, JACQUELINE ; DE SETTA, NATHALIA ; Van Sluys, Marie-Anne ; BUCKERIDGE, MARCOS S. The control of endopolygalacturonase expression by the sugarcane RAV transcription factor during aerenchyma formation. JOURNAL OF EXPERIMENTAL BOTANY. v. 70, p. 497-506, 2019. Qualis: A1
74.	THOMAS, ANDREW MALTEZ ; MANGHI, PAOLO ; ASNICAR, FRANCESCO ; PASOLLI, EDOARDO ; ARMANINI, FEDERICA ; ZOLFO, MORENO ; BEGHINI, FRANCESCO ; MANARA, SERENA ; KARCHER, NICOLAI ; POZZI, CHIARA ; GANDINI, SARA ; SERRANO, DAVIDE ; TARALLO, SONIA ; FRANCAVILLA, ANTONIO ; GALLO, GAETANO ; TROMPETTO, MARIO ; FERRERO, GIULIO ; MIZUTANI, SAYAKA ; SHIROMA, HIROTSUGU ; SETUBAL, J. C. ; et.al. Metagenomic analysis of colorectal cancer datasets identifies cross-cohort microbial diagnostic signatures and a link with choline degradation. NATURE MEDICINE. v. 25, p. 667-678, 2019. Qualis: A1
75.	TOZATTO-MAIO, KARINA ; GIROT, ROBERT ; LY, INDOU DEME ; ROCHA, VANDERSON ; PINTO, ANA CRISTINA SILVA ; DIAGNE, IBRAHIMA ; BENZERARA, YAHIA ; FERNANDES, FRANCISCO ; DINARDO, CARLA LUANA ; KASHIMA, SIMONE ; ARAUJO, ITAUA LESTON ; KENZEY, CHANTAL ; FONSECA, GUILHERME HENRIQUE HENCKLAIN ; RODRIGUES, EVANDRA STRAZZA ; VOLT, FERNANDA ; JARDULI, LUCIANA RIBEIRO ; RUGGERI, ANNALISA ; MARIASELVAM, CHRISTINA MARY ; GUALANDRO, SANDRA FATIMA MENOSI ; SOLER, J. M. P.. Polymorphisms in Inflammatory Genes Modulate the Occurrence of Clinical Complications in Patients with Sickle Cell Disease. BLOOD. v. 134, p. 4825-4825, 2019. Qualis: A1
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2018

1.	ABUJADI, CAIO ; CROARKIN, PAUL E. ; BELLINI, BIANCA B. ; BRENTANI, HELENA ; MARCOLIN, MARCO A.. Intermittent theta-burst transcranial magnetic stimulation for autism spectrum disorder: an open-label pilot study. REVISTA BRASILEIRA DE PSIQUIATRIA. v. 40, p. 309-311, 2018. Qualis: B1
2.	AMARAL, PAULO P. ; LEONARDI, TOMMASO ; HAN, NAMSHIK ; VIRÉ, EMMANUELLE ; GASCOIGNE, DENNIS K. ; ARIAS-CARRASCO, RAÚL ; BÜSCHER, MAGDALENA ; PANDOLFINI, LUCA ; ZHANG, ANDA ; PLUCHINO, STEFANO ; MARACAJA-COUTINHO, VINICIUS ; Nakaya, Helder I. ; HEMBERG, MARTIN ; SHIEKHATTAR, RAMIN ; ENRIGHT, ANTON J. ; KOUZARIDES, TONY. Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci. GENOME BIOLOGY. v. 19, p. 1, 2018. Qualis: Não identificado (GENOME BIOLOGY)
3.	AMGARTEN, DEYVID ; BRAGA, LUCAS P. P. ; DA SILVA, ALINE M. ; Setubal, João C.. MARVEL, a Tool for Prediction of Bacteriophage Sequences in Metagenomic Bins. Frontiers in Genetics. v. 9, p. ARTN 304, 2018. Qualis: A2
4.	AMORIM, LETICIA ; GOUVEIA, FLAVIA V ; GERMANN, JÜRGEN ; ZAMBORI, DEBORA ; MORAIS, ROSA ; SATO, FLAVIA M ; FONGARO, CAMILA ; PORTOLESE, JOANA ; BRENTANI, HELENA ; MARTINEZ, RAQUEL. Oxytocin and Gynecomastia: Correlation or Causality?. Cureus. v. 10, p. e2661, 2018. Qualis: C
5.	ANTTILA, VERNERI ; BULIK-SULLIVAN, BRENDAN ; FINUCANE, HILARY K. ; WALTERS, RAYMOND K. ; BRAS, JOSE ; DUNCAN, LARAMIE ; ESCOTT-PRICE, VALENTINA ; FALCONE, GUIDO J. ; GORMLEY, PADHRAIG ; MALIK, RAINER ; PATSOPOULOS, NIKOLAOS A. ; RIPKE, STEPHAN ; WEI, ZHI ; YU, DONGMEI ; LEE, PHIL H. ; TURLEY, PATRICK ; GRENIER-BOLEY, BENJAMIN ; CHOURAKI, VINCENT ; KAMATANI, YOICHIRO ; SAMAIA, H. B. ; et.al. Analysis of shared heritability in common disorders of the brain. SCIENCE. v. 360, p. eaap8757, 2018. Qualis: A1
6.	ARIAS-CARRASCO, RAÚL ; VÁSQUEZ-MORÁN, YESSENIA ; Nakaya, Helder I. ; MARACAJA-COUTINHO, VINICIUS. StructRNAfinder: an automated pipeline and web server for RNA families prediction. BMC BIOINFORMATICS. v. 19, p. 55, 2018. Qualis: A1
7.	ARNOLD, PAUL D ; ASKLAND, KATHLEEN D ; BARLASSINA, CRISTINA ; BELLODI, LAURA ; BIENVENU, O J ; BLACK, DONALD ; BLOCH, MICHAEL ; BRENTANI, HELENA ; BURTON, CHRISTIE L ; CAMARENA, BEATRIZ ; Cappi, Carolina ; CATH, DANIELLE ; CAVALLINI, MARIA ; CONTI, DAVID ; COOK, EDWIN ; CORIC, VLADIMIR ; CULLEN, BERNADETTE A ; CUSI, DANIELLE ; DAVIS, LEA K ; DELORME, RICHARD ; et.al. Revealing the complex genetic architecture of obsessive-compulsive disorder using meta-analysis. MOLECULAR PSYCHIATRY. v. 23, p. 1181-1188, 2018. Qualis: A1
8.	BARROS, JÉSSICA BARLETTO DE SOUSA ; SILVA, PAULO ALEX NEVES DA ; KOGA, ROSEMARY DE CARVALHO ROCHA ; GONZALEZ-DIAS, PATRÍCIA ; CARMO FILHO, JOSÉ RODRIGUES ; NAGIB, PATRÍCIA RESENDE ALO ; COELHO, VERÔNICA ; Nakaya, Helder I. ; FONSECA, SIMONE GONÇALVES ; PFRIMER, IRMTRAUT ARACI HOFFMANN. Acute Zika Virus Infection in an Endemic Area Shows Modest Proinflammatory Systemic Immunoactivation and Cytokine-Symptom Associations. Frontiers in Immunology. v. 9, p. 1, 2018. Qualis: A1
9.	BAYER-SANTOS, ETHEL ; LIMA, LÍDIA DOS PASSOS ; CESETI, LUCAS DE MORAES ; RATAGAMI, CAMILA YURI ; DE SANTANA, ELIANE SILVA ; DA SILVA, ALINE MARIA ; FARAH, CHUCK SHAKER ; ALVAREZ-MARTINEZ, CRISTINA ELISA. Xanthomonas citri T6SS mediates resistance to Dictyostelium predation and is regulated by an ECF σ factor and cognate Ser/Thr kinase. ENVIRONMENTAL MICROBIOLOGY. v. 20, p. 1562-1575, 2018. Qualis: A1
10.	BENCKE-MALATO, MARTA ; De Souza, Amanda Pereira ; RIBEIRO-ALVES, MARCELO ; SCHMITZ, JACQUELINE FLORES ; BUCKERIDGE, M. S. ; MARCIO, ALVES-FERREIRA. Short-term responses of soybean roots to individual and combinatorial effects of elevated [CO2] and water deficit. PLANT SCIENCE. v. 280, p. 283-296, 2018. Qualis: A1
11.	BITTENCOURT, NAJARA C. ; LEITE, JULIANA A. ; SILVA, ANA BEATRIZ I. E. ; PIMENTA, TAMIRYS S. ; SILVA-FILHO, JOÃO LUIZ ; CASSIANO, GUSTAVO C. ; LOPES, STEFANIE C. P. ; DOS-SANTOS, JOAO C. K. ; BOURGARD, CATARINA ; Nakaya, Helder I. ; DA SILVA VENTURA, ANA MARIA REVORÊDO ; LACERDA, MARCUS V. G. ; FERREIRA, MARCELO U. ; MACHADO, RICARDO L. D. ; ALBRECHT, LETUSA ; COSTA, FABIO T. M.. Genetic sequence characterization and naturally acquired immune response to Plasmodium vivax Rhoptry Neck Protein 2 (PvRON2). MALARIA JOURNAL. v. 17, p. 1-1, 2018. Qualis: A1
12.	BRADWELL, KATIE R ; KOPARDE, VISHAL N ; MATVEYEV, ANDREY V ; SERRANO, MYRNA G ; ALVES, JOÃO M P ; PARIKH, HARDIK ; HUANG, BERNICE ; LEE, VLADIMIR ; ESPINOSA-ALVAREZ, ONEIDA ; ORTIZ, PAOLA A ; COSTA-MARTINS, ANDRÉ G ; TEIXEIRA, MARTA M G ; Buck, Gregory A. Genomic comparison of Trypanosoma conorhini and Trypanosoma rangeli to Trypanosoma cruzi strains of high and low virulence. BMC GENOMICS. v. 19, p. 770, 2018. Qualis: A2
13.	BRAGA, LUCAS P. P. ; SOUCY, SHANNON M. ; AMGARTEN, DEYVID E. ; DA SILVA, ALINE M. ; Setubal, João C.. Bacterial Diversification in the Light of the Interactions with Phages: The Genetic Symbionts and Their Role in Ecological Speciation. FRONTIERS IN ECOLOGY AND EVOLUTION. v. 6, p. fevo.2018.00006, 2018. Qualis: A2
14.	CAIRES-JÚNIOR, LUIZ CARLOS ; GOULART, ERNESTO ; MELO, UIRÁ SOUTO ; ARAUJO, BRUNO HENRIQUE SILVA ; ALVIZI, LUCAS ; SOARES-SCHANOSKI, ALESSANDRA ; DE OLIVEIRA, DANYLLO FELIPE ; KOBAYASHI, GERSON SHIGERU ; GRIESI-OLIVEIRA, KARINA ; MUSSO, CAMILA MANSO ; Amaral, Murilo Sena ; DASILVA, LUCAS FERREIRA ; ASTRAY, RENATO MANCINI ; SUÁREZ-PATIÑO, SANDRA FERNANDA ; VENTINI, DANIELLA CRISTINA ; DA SILVA, SÉRGIO GOMES ; YAMAMOTO, GUILHERME LOPES ; EZQUINA, SUZANA ; NASLAVSKY, MICHEL SATYA ; Verjovski-Almeida, S. ; et.al. Publisher Correction: Discordant congenital Zika syndrome twins show differential in vitro viral susceptibility of neural progenitor cells. Nature Communications. v. 9, p. 1114, 2018. Qualis: A1
15.	CARNEIRO-PROIETTI, ANNA B. F. ; KELLY, SHANNON ; MIRANDA TEIXEIRA, CAROLINA ; Sabino, Ester C. ; ALENCAR, CECILIA S. ; Capuani, Ligia ; SALOMON SILVA, TASSILA P. ; ARAUJO, ADERSON ; LOUREIRO, PAULA ; MÁXIMO, CLÁUDIA ; LOBO, CLARISSE ; FLOR-PARK, MIRIAM V. ; RODRIGUES, DANIELA O. W. ; MOTA, ROSIMERE A. ; Gonçalez, Thelma T. ; HOPPE, CAROLYN ; Ferreira, João E. ; OZAHATA, MINA ; PAGE, GRIER P. ; GUO, YUELONG ; et.al. Clinical and genetic ancestry profile of a large multi-centre sickle cell disease cohort in Brazil. BRITISH JOURNAL OF HAEMATOLOGY. v. 1, p. bjh.15462, 2018. Qualis: A2
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17.	COSTA-MARTINS, ANDRÉ G. ; Lima, Luciana ; Alves, João Marcelo P. ; Serrano, Myrna G. ; Buck, Gregory A. ; Camargo, Erney P. ; Teixeira, Marta M. G.. Genome-wide identification of evolutionarily conserved Small Heat-Shock and eight other proteins bearing α-crystallin domain-like in kinetoplastid protists. PLoS One. v. 13, p. e0206012, 2018. Qualis: A1
18.	CRUZ, J. V. ; SERAFIM, R. B. ; SILVA, G. M. ; Guiliatti, S. ; CAMPOS, J. M. ; ARAUJO NETO, M. F. ; LEITE, F. H. A. ; TAFT, C. A. ; SILVA, C. H. T. P. ; SANTOS, C. B. R.. Computational design of new protein kinase 2 inhibitors for the treatment of inflammatory diseases using QSAR, pharmacophore-structure-based virtual screening, and molecular dynamics. JOURNAL OF MOLECULAR MODELING. v. 24, p. 224, 2018. Qualis: A4
19.	DA COSTA, RICARDO M F ; SIMISTER, RACHAEL ; ROBERTS, LUNED A ; TIMMS-TARAVELLA, EMMA ; CAMBLER, ARTHUR B ; CORKE, FIONA M K ; HAN, JIWAN ; WARD, RICHARD J ; BUCKERIDGE, MARCOS S ; GOMEZ, LEONARDO D ; BOSCH, MAURICE. Nutrient and drought stress: implications for phenology and biomass quality in miscanthus. ANNALS OF BOTANY. v. 1, p. 1, 2018. Qualis: A1
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68.	VAN DER HEIJDEN, YURI F. ; ABDULLAH, FAREED ; ANDRADE, BRUNO B. ; ANDREWS, JASON R. ; CHRISTOPHER, DEVASAHAYAM J. ; CRODA, JULIO ; EWING, HEATHER ; HAAS, DAVID W. ; HATHERILL, MARK ; HORSBURGH, C. ROBERT ; MAVE, VIDYA ; Nakaya, Helder I. ; ROLLA, VALERIA ; SRINIVASAN, SUDHA ; SUGIYONO, RETNA INDAH ; UGARTE-GIL, CESAR ; HAMILTON, CAROL. Building capacity for advances in tuberculosis research; proceedings of the third RePORT international meeting. TUBERCULOSIS. v. 113, p. 153-162, 2018. Qualis: A3
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2017

1.	ALVES, WONDER A.L. ; HASHIMOTO, RONALDO F. ; MARCOTEGUI, BEATRIZ. Ultimate levelings. COMPUTER VISION AND IMAGE UNDERSTANDING. v. 165, p. 60-74, 2017. Qualis: A2
2.	AMGARTEN, DEYVID ; MARTINS, LAYLA FARAGE ; LOMBARDI, KAREN CRISTINA ; ANTUNES, LUCIANA PRINCIPAL ; DE SOUZA, ANA PAULA SILVA ; NICASTRO, GIANLUCCA GONÇALVES ; KITAJIMA, ELLIOTT WATANABE ; QUAGGIO, RONALDO BENTO ; UPTON, CHRIS ; SETUBAL, JOÃO CARLOS ; DA SILVA, ALINE MARIA. Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages. BMC GENOMICS. v. 18, p. ARTN 346, 2017. Qualis: A2
3.	Amorim, CEG ; NUNES, K. ; MEYER, D. ; COMAS, D. ; BORTOLINI, M. C. ; SALZANO, F. M. ; HÜNEMEIER, T.. Genetic Signature of Natural Selection in First Americans. Proceedings of the National Academy of Sciences of the United States of America. v. 00, p. 000, 2017. Qualis: A1
4.	Anderson, Letícia ; GOMES, MONETE RAJÃO ; DASILVA, LUCAS FERREIRA ; PEREIRA, ADRIANA DA SILVA ANDRADE ; MOURÃO, MARINA M. ; ROMIER, CHRISTOPHE ; PIERCE, RAYMOND ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Histone deacetylase inhibition modulates histone acetylation at gene promoter regions and affects genome-wide gene transcription in Schistosoma mansoni. PLoS Neglected Tropical Diseases. v. 11, p. e0005539, 2017. Qualis: A1
5.	ASSIS, RENATA DE A. B. ; POLLONI, LORRAINE CRISTINA ; Patané, José S. L. ; THAKUR, SHALABH ; FELESTRINO, ÉRICA B. ; DIAZ-CABALLERO, JULIO ; DIGIAMPIETRI, LUCIANO ANTONIO ; GOULART, LUIZ RICARDO ; Almeida, Nalvo F. ; NASCIMENTO, RAFAEL ; DANDEKAR, ABHAYA M. ; ZAINI, PAULO A. ; Setubal, João C. ; Guttman, David S. ; MOREIRA, LEANDRO MARCIO. Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae. Scientific Reports. v. 7, p. 16133, 2017. Qualis: A2
6.	BAGAIOLO, LEILA F ; MARI, JAIR DE J ; BORDINI, DANIELA ; RIBEIRO, TATIANE C ; MARTONE, MARIA CAROLINA C ; CAETANO, SHEILA C ; BRUNONI, DECIO ; BRENTANI, HELENA ; PAULA, CRISTIANE S. Procedures and compliance of a video modeling applied behavior analysis intervention for Brazilian parents of children with autism spectrum disorders. AUTISM. v. 21, p. 603-610, 2017. Qualis: A1
7.	BAMPI, GIOVANA B. ; BISSO-MACHADO, RAFAEL ; Hünemeier, Tábita ; GHENO, TAILISE C. ; FURTADO, GABRIEL V. ; VELIZ-OTANI, DIEGO ; CORNEJO-OLIVAS, MARIO ; MAZZETI, PILLAR ; Bortolini, Maria Cátira ; JARDIM, LAURA B. ; SARAIVA-PEREIRA, MARIA LUIZA. Haplotype Study in SCA10 Families Provides Further Evidence for a Common Ancestral Origin of the Mutation. NEUROMOLECULAR MEDICINE. v. 00, p. 000-000, 2017. Qualis: A3
8.	BARROS-CARVALHO, GESIELE ALMEIDA ; Van Sluys, Marie-Anne ; LOPES, FABRICIO MARTINS. An Efficient Approach to Explore and Discriminate Anomalous Regions in Bacterial Genomes Based on Maximum Entropy. JOURNAL OF COMPUTATIONAL BIOLOGY. v. xxx, p. xxx-xxx, 2017. Qualis: A4
9.	BLOHMKE, CHRISTOPH J. ; HILL, JENNIFER ; DARTON, THOMAS C. ; CARVALHO-BURGER, MATHEUS ; EUSTACE, ANDREW ; JONES, CLAIRE ; SCHREIBER, FERNANDA ; GOODIER, MARTIN R. ; DOUGAN, GORDON ; Nakaya, Helder I. ; POLLARD, ANDREW J.. Induction of Cell Cycle and NK Cell Responses by Live-Attenuated Oral Vaccines against Typhoid Fever. Frontiers in Immunology. v. 8, p. 1, 2017. Qualis: A1
10.	Buckeridge, Marcos S. The evolution of the Glycomic Codes of extracellular matrices. BIOSYSTEMS. v. 164, p. 112-120, 2017. Qualis: A4
11.	C. DE OLIVEIRA, THAIS ; RODRIGUES, PRISCILA T. ; MENEZES, MARIA JOSÉ ; GONÇALVES-LOPES, RAQUEL M. ; BASTOS, MELISSA S. ; LIMA, NATHÁLIA F. ; BARBOSA, SUSANA ; GERBER, ALEXANDRA L. ; LOSS DE MORAIS, GUILHERME ; BERNÁ, LUISA ; PHELAN, JODY ; ROBELLO, CARLOS ; DE VASCONCELOS, ANA TEREZA R. ; Alves, João Marcelo P. ; FERREIRA, MARCELO U.. Genome-wide diversity and differentiation in New World populations of the human malaria parasite Plasmodium vivax. PLoS Neglected Tropical Diseases. v. 11, p. e0005824, 2017. Qualis: A1
12.	Capuani, Ligia ; BIERRENBACH, ANA LUIZA ; PEREIRA ALENCAR, AIRLANE ; Mendrone, Alfredo ; FERREIRA, J. E. ; Custer, Brian ; P. RIBEIRO, ANTONIO LUIZ ; SABINO, Ester Cerdeira. Mortality among blood donors seropositive and seronegative for Chagas disease (1996-2000) in São Paulo, Brazil: A death certificate linkage study. PLoS Neglected Tropical Diseases. v. 11, p. e0005542, 2017. Qualis: A1
13.	CASTILLO-ORDONEZ1, W. O. ; TAMAROZZI, E. R. ; SILVA, G. M. ; ARISTIZABAL-PACHON, A. F. ; SAKAMOTO-HOJO1, E. T. ; TAKAHASHI, C. S. ; Giuliatti, Silvana. Exploration of the Acetylcholinesterase Inhibitory Activity of Some Alkaloids from Amaryllidaceae Family by Molecular Docking In Silico. NEUROCHEMICAL RESEARCH. v. 42, p. 2826-2830, 2017. Qualis: A3
14.	CAYE, ARTHUR ; KIELING, RENATA R. ; ROCHA, THIAGO B. ; GRAEFF-MARTINS, ANA S. ; GEYER, CRISTIANE ; KRIEGER, FERNANDA ; MANFRO, GISELE G. ; BRENTANI, HELENA ; ISOLAN, LUCIANO ; ROSÁRIO, MARIA C. ; GRASSI-OLIVEIRA, RODRIGO ; CAETANO, SHEILA C. ; MORIYAMA, TAIS ; ROHDE, LUIS A. ; KIELING, CHRISTIAN. Schedule for Affective Disorders and Schizophrenia for School-Age Children - Present and Lifetime Version (K-SADS-PL), DSM-5 update: translation into Brazilian Portuguese. REVISTA BRASILEIRA DE PSIQUIATRIA. v. 39, p. 384-386, 2017. Qualis: B1
15.	CHEN, WEIQIANG ; FOO, SUAN-SIN ; ZAID, ALI ; TENG, TERK-SHIN ; HERRERO, LARA J. ; WOLF, STEFAN ; THARMARAJAH, KOTHILA ; VU, LUAN D. ; VAN VREDEN, CARYN ; TAYLOR, ADAM ; FREITAS, JOSEPH R. ; LI, RACHEL W. ; WOODRUFF, TRENT M. ; GORDON, RICHARD ; OJCIUS, DAVID M. ; Nakaya, Helder I. ; KANNEGANTI, THIRUMALA-DEVI ; O?NEILL, LUKE A. J. ; ROBERTSON, AVRIL A. B. ; KING, NICHOLAS J. ; et.al. Specific inhibition of NLRP3 in chikungunya disease reveals a role for inflammasomes in alphavirus-induced inflammation. Nature Microbiology. v. 2, p. 1435-1445, 2017. Qualis: A1
16.	CIAMPI DE ANDRADE, DANIEL ; Maschietto, Mariana ; GALHARDONI, RICARDO ; GOUVEIA, GISELE ; CHILE, THAIS ; VICTORINO KREPISCHI, ANA C. ; DALE, CAMILA S. ; BRUNONI, ANDRÉ R. ; PARRAVANO, DANIELLA C. ; CUEVA MOSCOSO, ANA S. ; RAICHER, IRINA ; KAZIYAMA, HELENA H. S. ; TEIXEIRA, MANOEL J. ; BRENTANI, HELENA P.. Epigenetics insights into chronic pain. PAIN. v. 158, p. 1473-1480, 2017. Qualis: A1
17.	COSTA, VIVIAN V. ; DEL SARTO, JULIANA L. ; ROCHA, REBECA F. ; SILVA, FLAVIA R. ; DORIA, JULIANA G. ; OLMO, ISABELLA G. ; MARQUES, RAFAEL E. ; QUEIROZ-JUNIOR, CELSO M. ; FOUREAUX, GISELLE ; ARAÚJO, JULIA MARIA S. ; CRAMER, ALLYSSON ; REAL, ANA LUÍZA C. V. ; RIBEIRO, LUCAS S. ; SARDI, SILVIA I. ; FERREIRA, ANDERSON J. ; MACHADO, FABIANA S. ; DE OLIVEIRA, ANTÔNIO C. ; TEIXEIRA, ANTÔNIO L. ; Nakaya, Helder I. ; SOUZA, DANIELLE G. ; et.al. N -Methyl-d-Aspartate (NMDA) Receptor Blockade Prevents Neuronal Death Induced by Zika Virus Infection. mBio. v. 8, p. e00350-17, 2017. Qualis: A1
18.	CUNHA, RENATO ; ZAGO, MARCO A. ; QUEROL, SERGIO ; VOLT, FERNANDA ; RUGGERI, ANNALISA ; SANZ, GUILLERMO ; POUTHIER, FABIENNE ; KOGLER, GESINE ; VICARIO, JOSÉ L. ; BERGAMASCHI, PAOLA ; SACCARDI, RICCARDO ; LAMAS, CARMEN H. ; DÍAZ-DE-HEREDIA, CRISTINA ; MICHEL, GERARD ; BITTENCOURT, HENRIQUE ; TAVELLA, MARLI ; PANEPUCCI, RODRIGO A. ; FERNANDES, FRANCISCO ; PAVAN, JULIA ; GLUCKMAN, ELIANE. Impact of CTLA4 genotype and other immune response gene polymorphisms on outcomes after single umbilical cord blood transplantation. Blood (Philadelphia, PA). v. 129, p. 525-532, 2017. Qualis: A1
19.	DA COSTA VASCONCELOS, FERNANDA NOGALES ; MACIEL, NIKOLAS KOSHIYAMA ; FAVARO, DENIZE CRISTINA ; DE OLIVEIRA, LUCIANA COUTINHO ; BARBOSA, ANGELA SILVA ; SALINAS, ROBERTO KOPKE ; de SOUZA, Robson Francisco ; FARAH, CHUCK SHAKER ; GUZZO, CRISTIANE RODRIGUES. Structural and Enzymatic Characterization of a cAMP-Dependent Diguanylate Cyclase from Pathogenic Leptospira Species. JOURNAL OF MOLECULAR BIOLOGY. v. 429, p. 2337-2352, 2017. Qualis: A2
20.	DE ALMEIDA, DANILO CANDIDO ; BASSI, ÊNIO JOSE ; AZEVEDO, HATYLAS ; Anderson, Letícia ; ORIGASSA, CLARICE SILVIA TAEMI ; CENEDEZE, MARCOS ANTÔNIO ; ANDRADE-OLIVEIRA, VINICIUS DE ; FELIZARDO, RAPHAEL JOSÉ FERREIRA ; SILVA, REINALDO CORREIA DA ; HIYANE, MEIRE IOSHIE ; SEMEDO, PATRICIA ; REIS, MARLENE ANTÔNIA DOS ; MOREIRA-FILHO, CARLOS ALBERTO ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; PACHECO-SILVA, ÁLVARO ; CÂMARA, NIELS OLSEN SARAIVA. A Regulatory miRNA-mRNA Network Is Associated with Tissue Repair Induced by Mesenchymal Stromal Cells in Acute Kidney Injury. Frontiers in Immunology (Online). v. 7, p. 645, 2017. Qualis: A1
21.	DE ALMEIDA, JÉSSICA B. ; DE CARVALHO, SUZI P. ; DE FREITAS, LEANDRO M. ; GUIMARÃES, ANA MARCIA S. ; DO NASCIMENTO, NAÍLA C. ; DOS SANTOS, ANDREA P. ; Messick, Joanne B. ; Timenetsky, Jorge ; MARQUES, LUCAS M.. Draft Genome Sequence of Methicillin-Resistant Staphylococcus aureus Strain LC33 Isolated from Human Breast Milk. GENOME ANNOUNCEMENTS. v. 5, p. e00154-17, 2017. Qualis: B3
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23.	DE AZEVEDO, S. ; GONZÁLEZ, M. F. ; CINTAS, C. ; RAMALLO, V. ; QUINTO-SÁNCHEZ, M. ; MÁRQUEZ, F. ; HÜNEMEIER, T. ; PASCHETTA, C. ; RUDERMAN, A. ; NAVARRO, P. ; PAZOS, B. A. ; SILVA DE CERQUEIRA, C. C. ; VELAN, O. ; RAMÍREZ-ROZZI, F. ; CALVO, N. ; CASTRO, H. G. ; PAZ, R. R. ; GONZÁLEZ-JOSÉ, R.. Nasal airflow simulations suggest convergent adaptation in Neanderthals and modern humans. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 114, p. 12442-12447, 2017. Qualis: A1
24.	DE CARVALHO, SUZI P. ; DE ALMEIDA, JÉSSICA B. ; DE FREITAS, LEANDRO M. ; GUIMARAES, ANA MARCIA S. ; DO NASCIMENTO, NAÍLA C. ; DOS SANTOS, ANDREA P. ; Messick, Joanne B. ; Timenetsky, Jorge ; MARQUES, LUCAS M.. Draft Genome Sequences of Two Clinical Methicillin-Resistant Staphylococcus aureus Strains Isolated from Healthy Children in Brazil. GENOME ANNOUNCEMENTS. v. 5, p. e00158-17, 2017. Qualis: B3
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26.	DE OLIVEIRA, ÉRICA APARECIDA ; DE LIMA, DIOGENES SAULO ; CARDOZO, LUCAS ESTEVES ; DE SOUZA, GARCIA FERREIRA ; DE SOUZA, NAYANE ; ALVES-FERNANDES, DEBORA KRISTINA ; FAIÃO-FLORES, FERNANDA ; PABLO QUINCOCES, JOSÉ AGUSTÍN ; DE MORAES BARROS, SILVIA BERLANGA ; Nakaya, Helder I. ; MONTEIRO, GISELE ; MARIA-ENGLER, SILVYA STUCHI. Toxicogenomic and bioinformatics platforms to identify key molecular mechanisms of a curcumin-analogue DM-1 toxicity in melanoma cells. PHARMACOLOGICAL RESEARCH. v. 1, p. 1, 2017. Qualis: A1
27.	DE SOUZA, SILVANA SANT´ANNA ; CATTA-PRETA, CAROLINA MOURA ; Alves, João Marcelo P. ; CAVALCANTI, DANIELLE P. ; Teixeira, Marta M. G. ; Camargo, Erney P. ; DE SOUZA, WANDERLEY ; SILVA, ROSANE ; MOTTA, MARIA CRISTINA M.. Expanded repertoire of kinetoplast associated proteins and unique mitochondrial DNA arrangement of symbiont-bearing trypanosomatids. PLoS One. v. 12, p. e0187516, 2017. Qualis: A1
28.	ERILL, IVAN ; PUIGVERT, MARINA ; LEGRAND, LUDOVIC ; GUARISCHI-SOUSA, RODRIGO ; VANDECASTEELE, CÉLINE ; Setubal, João C. ; GENIN, STEPHANE ; GUIDOT, ALICE ; VALLS, MARC. Comparative Analysis of Ralstonia solanacearum Methylomes. Frontiers in Plant Science. v. 8, p. 504, 2017. Qualis: A1
29.	FERREIRA, LUDMILA RODRIGUES PINTO ; FERREIRA, FREDERICO MORAES ; LAUGIER, LAURIE ; CABANTOUS, SANDRINE ; NAVARRO, ISABELA CUNHA ; DA SILVA CÂNDIDO, DARLAN ; RIGAUD, VAGNER CARVALHO ; REAL, JULIANA MONTE ; PEREIRA, GLAUCIA VILAR ; PEREIRA, ISABELA RESENDE ; RUIVO, LEONARDO ; PANDEY, RAMENDRA PATI ; SAVOIA, MARILDA ; KALIL, JORGE ; LANNES-VIEIRA, JOSELI ; NAKAYA, HELDER ; CHEVILLARD, CHRISTOPHE ; CUNHA-NETO, EDECIO. Integration of miRNA and gene expression profiles suggest a role for miRNAs in the pathobiological processes of acute Trypanosoma cruzi infection. Scientific Reports. v. 7, p. 1, 2017. Qualis: A2
30.	FIRETTI, FABIANA ; ZUNTINI, ALEXANDRE RIZZO ; GAIARSA, JONAS WEISMANN ; OLIVEIRA, RENATA SOUZA ; LOHMANN, LÚCIA G. ; Van Sluys, Marie-Anne. Complete chloroplast genome sequences contribute to plant species delimitation: A case study of the Anemopaegma species complex. AMERICAN JOURNAL OF BOTANY. v. 104, p. 1493-1509, 2017. Qualis: A2
31.	FRANCA, G. S. ; GALANTE, P. A. F. ; HINSKE, L. C. ; Vibranovski, M.D.. Unveiling the Impact of the Genomic Architecture on the Evolution of Vertebrate microRNAs. Frontiers in Genetics. v. 8, p. 1-8, 2017. Qualis: A2
32.	Iyer, Lakshminarayan M. ; BURROUGHS, A. MAXWELL ; Anand, Swadha ; de Souza, Robson F. ; Aravind, L.. Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements. JOURNAL OF BACTERIOLOGY. v. 199, p. e00245-17, 2017. Qualis: A3
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34.	KAZMIN, DMITRI ; Nakaya, Helder I. ; LEE, EVA K. ; JOHNSON, MATTHEW J. ; VAN DER MOST, ROBBERT ; VAN DEN BERG, ROBERT A. ; BALLOU, W. RIPLEY ; JONGERT, ERIK ; WILLE-REECE, ULRIKE ; OCKENHOUSE, CHRISTIAN ; Aderem, Alan ; ZAK, DANIEL E. ; SADOFF, JERALD ; HENDRIKS, JENNY ; Wrammert, Jens ; Ahmed, Rafi ; Pulendran, Bali. Systems analysis of protective immune responses to RTS,S malaria vaccination in humans. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 114, p. 2425-2430, 2017. Qualis: A1
35.	LEITE, D. C. C. ; GRANDIS, A. ; TAVARES, E. Q. P. ; PIOVEZANI, A. R. ; PATTATHIL, S. ; AVCI, U. ; ROSSINI, A. ; CAMBLER, A. ; de SOUZA, A. P. ; HAHN, M. G. ; BUCKERIDGE, M. S.. Cell wall changes during the formation of aerenchyma in sugarcane roots. ANNALS OF BOTANY. v. 10, p. 693, 2017. Qualis: A1
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38.	Li, Shuzhao ; SULLIVAN, NICOLE L. ; Rouphael, Nadine ; YU, TIANWEI ; BANTON, SOPHIA ; MADDUR, MOHAN S. ; McCausland, Megan ; CHIU, CHRISTOPHER ; CANNIFF, JENNIFER ; DUBEY, SHERI ; LIU, KEN ; TRAN, VILINH ; HAGAN, THOMAS ; DURAISINGHAM, SAI ; WIELAND, ANDREAS ; MEHTA, ANEESH K. ; WHITAKER, JENNIFER A. ; SUBRAMANIAM, SHANKAR ; JONES, DEAN P. ; NAKAYA, H. I. ; et.al. Metabolic Phenotypes of Response to Vaccination in Humans. CELL. v. 169, p. 862-877.e17, 2017. Qualis: A1
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43.	MASOTTI, C. ; BRITO, L.A. ; NICA, A.C. ; LUDWIG, K.U. ; NUNES, K. ; SAVASTANO, C.P. ; MALCHER, C. ; FERREIRA, S.G. ; KOBAYASHI, G.S. ; BUENO, D.F. ; ALONSO, N. ; FRANCO, D. ; ROJAS-MARTINEZ, A. ; DOS SANTOS, S.E. ; GALANTE, P.A. ; MEYER, D. ; HÜNEMEIER, T. ; MANGOLD, E. ; DERMITZAKIS, E.T. ; PASSOS-BUENO, M.R. ; et.al. MRPL53 , a New Candidate Gene for Orofacial Clefting, Identified Using an eQTL Approach. JOURNAL OF DENTAL RESEARCH. v. 00, p. 002203451773580-000, 2017. Qualis: A1
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45.	MEIRELES, D.A. ; DOMINGOS, R.M. ; GAIARSA, J.W. ; RAGNONI, E.G. ; BANNITZ-FERNANDES, R. ; DA SILVA NETO, J.F. ; DE SOUZA, R.F. ; NETTO, L.E.S.. Functional and evolutionary characterization of Ohr proteins in eukaryotes reveals many active homologs among pathogenic fungi. Redox Biology. v. 12, p. 600-609, 2017. Qualis: A1
46.	MELLO, J. C. M. ; FERNANDES, G. R. ; Vibranovski, M.D. ; PEREIRA, L. V.. Early X chromosome inactivation during human preimplantation development revealed by single-cell RNA-sequencing. Scientific Reports. v. 7, p. 10794, 2017. Qualis: A2
47.	MENDES, EDUARDO ; ACETTURI, BEATRIZ G. ; THOMAS, ANDREW M. ; MARTINS, FLAVIANO DOS S. ; CRISMA, AMANDA R. ; MURATA, GILSON ; BRAGA, TÁRCIO T. ; CAMÂRA, NIELS O. S. ; FRANCO, ADRIANA L. DOS S. ; Setubal, João C. ; RIBEIRO, WILLIAN R. ; VALDUGA, CLAUDETE J. ; CURI, RUI ; DIAS-NETO, Emmanuel ; TAVARES-DE-LIMA, WOTHAN ; FERREIRA, CAROLINE M.. Prophylactic Supplementation of Bifidobacterium longum 51A Protects Mice from Ovariectomy-Induced Exacerbated Allergic Airway Inflammation and Airway Hyperresponsiveness. Frontiers in Microbiology. v. 8, p. 1732, 2017. Qualis: A1
48.	MILLER, ROBERT NEIL GERARD ; COSTA ALVES, GABRIEL SERGIO ; Van Sluys, Marie-Anne. Plant immunity: unravelling the complexity of plant responses to biotic stresses. ANNALS OF BOTANY. v. 119, p. 681-687, 2017. Qualis: A1
49.	MORAES, LAURO ÂNGELO GONÇALVES DE ; FELESTRINO, ÉRICA BARBOSA ; ASSIS, RENATA DE ALMEIDA BARBOSA ; MATOS, DIOGO ; LIMA, JOUBERT DE CASTRO ; LIMA, LEANDRO DE ARAÚJO ; ALMEIDA, NALVO FRANCO ; SETUBAL, JOÃO CARLOS ; GARCIA, CAMILA CARRIÃO MACHADO ; MOREIRA, LEANDRO MARCIO. TabPath: interactive tables for metabolic pathway analysis. BIOINFORMATICS. v. 34, p. 1040-1042, 2017. Qualis: A1
50.	MORAIS, ENYARA R. ; OLIVEIRA, K. C. ; PAULA, R. G. ; ORNELAS, A. M. ; MOREIRA, E. B. C. ; BADOCO, F. R. ; MAGALHÃES, LIZANDRA G. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; RODRIGUES, Vanderlei. Effects of proteasome inhibitor MG-132 on the parasite Schistosoma mansoni. PLoS One. v. 12, p. e0184192, 2017. Qualis: A1
51.	Moreira, Leandro M. ; SOARES, MÁRCIA R. ; FACINCANI, AGDA P. ; FERREIRA, CRISTIANO B. ; FERREIRA, RAFAEL M. ; Ferro, Maria I. T. ; GOZZO, FÁBIO C. ; FELESTRINO, ÉRICA B. ; ASSIS, RENATA A. B. ; GARCIA, CAMILA CARRIÃO M. ; Setubal, João C. ; FERRO, JESUS A. ; DE OLIVEIRA, JULIO C.F.. Proteomics-based identification of differentially abundant proteins reveals adaptation mechanisms of Xanthomonas citri subsp. citri during Citrus sinensis infection. BMC MICROBIOLOGY. v. 17, p. 155, 2017. Qualis: A2
52.	NAGEL, RAIMUND ; TURRINI, PAULA C. G. ; NETT, RYAN S. ; Leach, Jan E. ; VERDIER, VALÉRIE ; Van Sluys, Marie-Anne ; PETERS, REUBEN J.. An operon for production of bioactive gibberellin A 4 phytohormone with wide distribution in the bacterial rice leaf streak pathogen Xanthomonas oryzae pv. oryzicola. NEW PHYTOLOGIST. v. 214, p. 1-7, 2017. Qualis: A1
53.	NAVARRO, BRUNO V. ; ELBL, PAULA ; DE SOUZA, AMANDA P. ; JARDIM, VINICIUS ; DE OLIVEIRA, LEANDRO F. ; MACEDO, AMANDA F. ; DOS SANTOS, ANDRÉ L. W. ; Buckeridge, Marcos S. ; FLOH, ENY I. S.. Carbohydrate-mediated responses during zygotic and early somatic embryogenesis in the endangered conifer, Araucaria angustifolia. PLoS One. v. 12, p. e0180051, 2017. Qualis: A1
54.	OLIVEIRA, ANA-CAROLINA ; GOMES-NETO, JOÃO FRANCISCO ; BARBOSA, CARLOS-HENRIQUE DANTAS ; GRANATO, ALESSANDRA ; REIS, BERNARDO S ; SANTOS, BRUNO MAIA ; FUCS, RITA ; CANTO, FÁBIO B ; Nakaya, Helder I ; NÓBREGA, ALBERTO ; BELLIO, MARIA. Crucial role for T cell-intrinsic IL-18R-MyD88 signaling in cognate immune response to intracellular parasite infection. eLife. v. 6, p. 1, 2017. Qualis: A1
55.	OLIVEIRA, ROSÂNGELA C. ; Yamaguti, Maurício ; MARQUES, LUCAS M. ; Buzinhani, Melissa ; RIZZO, HUBER ; MEIRA-JUNIOR, ENOCH BRANDÃO DE SOUZA ; GUIMARÃES, ANA MÁRCIA S. ; GREGORY, LILIAN ; Timenetsky, Jorge. Molecular characterization of ureaplasmas isolated from reproductive tract of goats and sheep from Brazil. Brazilian Journal of Microbiology (Impresso). v. pii, p. S1517-8382(16)3, 2017. Qualis: B1
56.	PATANÉ, JOSÉ S.L. ; MARTINS, JOAQUIM ; CASTELÃO, ANA BEATRIZ ; NISHIBE, CHRISTIANE ; MONTERA, LUCIANA ; BIGI, FABIANA ; ZUMÁRRAGA, MARTIN J. ; CATALDI, ANGEL A. ; JUNIOR, ANTÔNIO FONSECA ; ROXO, ELIANA ; OSÓRIO, ANA LUIZA A.R. ; JORGE, KLAUDIA S. ; THACKER, TYLER C. ; Almeida, Nalvo F. ; ARAÚJO, FLABIO R. ; Setubal, João C.. Patterns and Processes of Mycobacterium bovis Evolution Revealed by Phylogenomic Analyses. Genome Biology and Evolution. v. 9, p. 521-535, 2017. Qualis: A1
57.	PRADA-MEDINA, CESAR A. ; FUKUTANI, KIYOSHI F. ; PAVAN KUMAR, NATHELLA ; GIL-SANTANA, LEONARDO ; BABU, SUBASH ; LICHTENSTEIN, FLÁVIO ; WEST, KIM ; SIVAKUMAR, SHANMUGAM ; MENON, PRADEEP A. ; VISWANATHAN, VIJAY ; ANDRADE, BRUNO B. ; Nakaya, Helder I. ; KORNFELD, HARDY. Systems Immunology of Diabetes-Tuberculosis Comorbidity Reveals Signatures of Disease Complications. Scientific Reports. v. 7, p. 1, 2017. Qualis: A2
58.	PROW, NATALIE A. ; TANG, BING ; Gardner, Joy ; LE, THUY T. ; TAYLOR, ADAM ; POO, YEE S. ; NAKAYAMA, ERI ; HIRATA, THIAGO D. C. ; Nakaya, Helder I. ; SLONCHAK, ANDRII ; MUKHOPADHYAY, PAMELA ; MAHALINGAM, SURESH ; SCHRODER, WAYNE A. ; KLIMSTRA, WILLIAM ; Suhrbier, Andreas. Lower temperatures reduce type I interferon activity and promote alphaviral arthritis. PLoS Pathogens. v. 13, p. e1006788, 2017. Qualis: A1
59.	PUIGVERT, MARINA ; GUARISCHI-SOUSA, RODRIGO ; ZULUAGA, PAOLA ; COLL, NÚRIA S. ; MACHO, ALBERTO P. ; Setubal, João C. ; VALLS, MARC. Transcriptomes of Ralstonia solanacearum during Root Colonization of Solanum commersonii. Frontiers in Plant Science. v. 8, p. 370, 2017. Qualis: A1
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62.	REALES, GUILLERMO ; ROVARIS, DIEGO L. ; JACOVAS, VANESSA C. ; Hünemeier, Tábita ; SANDOVAL, JOSÉ R. ; SALAZAR-GRANARA, ALCIBIADES ; DEMARCHI, DARÍO A. ; TARAZONA-SANTOS, EDUARDO ; FELKL, ALINE B. ; SERAFINI, MICHELE A. ; Salzano, Francisco M. ; BISSO-MACHADO, RAFAEL ; COMAS, DAVID ; PAIXÃO-CÔRTES, VANESSA R. ; Bortolini, Maria Cátira. A tale of agriculturalists and hunter-gatherers: Exploring the thrifty genotype hypothesis in native South Americans. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY. v. 00, p. 000-000, 2017. Qualis: A2
63.	REIS, VIVIANE NERI DE SOUZA ; KITAJIMA, JOÃO PAULO ; TAHIRA, ANA CAROLINA ; FEIO-DOS-SANTOS, ANA CECÍLIA ; FOCK, RODRIGO AMBRÓSIO ; LISBOA, BIANCA CRISTINA GARCIA ; SIMÕES, SÉRGIO NERY ; KREPISCHI, ANA C. V. ; Rosenberg, Carla ; LOURENÇO, NAILA CRISTINA ; PASSOS-BUENO, MARIA RITA ; BRENTANI, HELENA. Integrative Variation Analysis Reveals that a Complex Genotype May Specify Phenotype in Siblings with Syndromic Autism Spectrum Disorder. Plos One. v. 12, p. e0170386, 2017. Qualis: A1
64.	REYES, ALEJANDRO ; P. ALVES, JOÃO MARCELO ; Durham, Alan Mitchell ; Gruber, Arthur. Use of profile hidden Markov models in viral discovery: current insights. Advances in Genomics and Genetics. v. Volume 7, p. 29-45, 2017. Qualis: C
65.	REZENDE LIMA, WÂNIA ; CORREA MARTINS, DAVID ; SIMÔNIO PARREIRA, KLEBER ; SCARPELLI, PEDRO ; SANTOS DE MORAES, MIRIAM ; TOPALIS, PANTELIS ; FUMIO HASHIMOTO, RONALDO ; R. S. GARCIA, CÉLIA. Genome-wide analysis of the human malaria parasite Plasmodium falciparum transcription factor PfNF-YB shows interaction with a CCAAT motif. Oncotarget. v. 8, p. 113987-114001, 2017. Qualis: A2
66.	RODRIGUES, MARIA GABRIELA FONTANETTI ; SOARES, MURILO RACY ; GIMENEZ, DANIELE FERNANDA JOVINO ; FONSECA, LARISSA FERNANDA SIMIELLI ; TORRIERI, ERICO ; RAMOS, ESTER SILVEIRA ; Giuliatti, Silvana. Detection of differentially methylated regions of irradiated fig tree selections. SCIENTIA AGRICOLA. v. 74, p. 285-293, 2017. Qualis: A2
67.	ROSSI, F ; GIRARDELLO, R ; MORAIS, C ; CURY, AP ; MARTINS, LF ; SILVA, AM ; ABDALA, E ; SETUBAL, JC ; DUARTE, AJ. Plasmid-mediated mcr-1 in carbapenem-susceptible Escherichia coli ST156 causing a blood infection: an unnoticeable spread of colistin resistance in Brazil?. Clinics. v. 72, p. 642-644, 2017. Qualis: B4
68.	ROVERSI, F. M. ; PERICOLE, F. V. ; MACHADO-NETO, J. A. ; DUARTE, A. S. ; LONGHINI, A. L. L. ; CORROCHER, F. A. ; PALODETTO, B. ; FERRO, K. P. ; ROSA, R. G. ; Baratti, Mariana O ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; TRAINA, F. ; MOLINARI, A. ; BOTTA, M. ; SAAD, S. T. O.. Hematopoietic cell kinase (HCK) is a potential therapeutic target for dysplastic and leukemic cells due to integration of erythropoietin/PI3K pathway and regulation of erythropoiesis. BIOCHIMICA ET BIOPHYSICA ACTA. MOLECULAR BASIS OF DISEASE. v. 1863, p. 450-461, 2017. Qualis: Não identificado (MOLECULAR BASIS OF DISEASE)
69.	SHERIDAN, MEGAN A. ; YUNUSOV, DINAR ; BALARAMAN, VELMURUGAN ; ALEXENKO, ANDREI P. ; YABE, SHINICHIRO ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; SCHUST, DANNY J. ; FRANZ, ALEXANDER ; SADOVSKY, YOEL ; EZASHI, TOSHIHIKO ; ROBERTS, R. MICHAEL. Vulnerability of primitive human placental trophoblast to Zika virus. Proceedings of the National Academy of Sciences of the United States of America. v. 00, p. 201616097, 2017. Qualis: A1
70.	SPINDOLA, LETICIA MARIA ; PAN, PEDRO MARIO ; MORETTI, PATRICIA NATALIA ; OTA, VANESSA KIYOMI ; SANTORO, MARCOS LEITE ; COGO-MOREIRA, HUGO ; GADELHA, ARY ; SALUM, GIOVANNI ; MANFRO, GISELE GUS ; MARI, JAIR JESUS ; BRENTANI, HELENA ; GRASSI-OLIVEIRA, RODRIGO ; BRIETZKE, ELISA ; MIGUEL, EURIPEDES CONSTANTINO ; ROHDE, LUIS AUGUSTO ; SATO, JOÃO RICARDO ; BRESSAN, RODRIGO AFFONSECA ; BELANGERO, SINTIA IOLE. Gene expression in blood of children and adolescents: Mediation between childhood maltreatment and major depressive disorder. Journal of Psychiatric Research. v. 92, p. 24-30, 2017. Qualis: A1
71.	STOPPE, N. C. ; TORRES, T. T. ; LEOTTI, F. C. ; SATO, M. I. Z. ; OTTOBONI, L. M. M.. Microbial diversity in freshwater samples and their contaminating human and bovine hosts. PEERJ PREPRINTS. v. 5, p. e2992v1, 2017. Qualis: NP
72.	STOPPE, NANCY DE CASTRO ; SILVA, JULIANA S. ; CARLOS, CAMILA ; SATO, MARIA I. Z. ; SARAIVA, ANTONIO M. ; OTTOBONI, LAURA M. M. ; TORRES, TATIANA T.. Worldwide Phylogenetic Group Patterns of Escherichia coli from Commensal Human and Wastewater Treatment Plant Isolates. Frontiers in Microbiology. v. 8, p. 2512, 2017. Qualis: A1
73.	TANDONNET, SOPHIE ; Torres, Tatiana Teixeira. Traditional versus 3- RNA-seq in a non-model species. GENOMICS DATA. v. 11, p. 9-16, 2017. Qualis: B1
74.	VASCONCELOS, E. J. R. ; DASILVA, LUCAS FERREIRA ; PIRES, D. S. ; LAVEZZO, G. M. ; PEREIRA, ADRIANA DA SILVA ANDRADE ; AMARAL, MURILO S. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. The Schistosoma mansoni genome encodes thousands of long non-coding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports. v. 7, p. 10508, 2017. Qualis: A2
75.	Vieira, Natassia M. ; SPINAZZOLA, JANELLE M. ; ALEXANDER, MATTHEW S. ; Moreira, Yuri B. ; KAWAHARA, GENRI ; GIBBS, DEVIN E. ; MEAD, LILLIAN C. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Zatz, Mayana ; KUNKEL, LOUIS M.. Repression of phosphatidylinositol transfer protein α ameliorates the pathology of Duchenne muscular dystrophy. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (ONLINE). v. 114, p. 201703556, 2017. Qualis: A1
76.	VILELA, MARIANE DE MENDONÇA ; DEL-BEM, LUIZ-EDUARDO ; Van Sluys, Marie-Anne ; DE SETTA, NATHALIA ; KITAJIMA, JOÃO PAULO ; CRUZ, GUILHERME MARCELO QUEIROGA ; SFORÇA, DANILO AUGUSTO ; DE SOUZA, ANETE PEREIRA ; FERREIRA, PAULO CAVALCANTI GOMES ; GRATIVOL, CLÍCIA ; CARDOSO-SILVA, CLAUDIO BENICIO ; Vicentini, Renato ; VINCENTZ, Michel. Analysis of three sugarcane homo/homeologous regions suggests independent polyploidization events of Saccharum officinarum and Saccharum spontaneum. Genome Biology and Evolution. v. 9, p. evw293-278, 2017. Qualis: A1
77.	WANG, NIAN ; PIERSON, ELIZABETH A. ; SETUBAL, JOÃO CARLOS ; XU, JIN ; LEVY, JULIEN G. ; ZHANG, YUNZENG ; LI, JINYUN ; RANGEL, LUIZ THIBERIO ; MARTINS, JOAQUIM. The Candidatus Liberibacter-Host Interface: Insights into Pathogenesis Mechanisms and Disease Control. Annual Review of Phytopathology. v. 55, p. 451-482, 2017. Qualis: A1
78.	YANCY-CABALLERO, DAISON ; LING, LIU Y. ; ARCHILHA, NATHALY L. ; FERREIRA, J. E. ; DRIEMEIER, C.. Mineral Particles in Sugar Cane Bagasse: Localization and Morphometry Using Microtomography Analysis. ENERGY & FUELS (ONLINE). v. 31, p. 12288-12296, 2017. Qualis: A1
79.	ZIMPEL, CRISTINA KRAEMER ; BRANDÃO, PAULO E. ; DE SOUZA FILHO, ANTÔNIO F. ; de Souza, Robson F. ; IKUTA, CÁSSIA Y. ; FERREIRA NETO, JOSÉ SOARES ; CAMARGO, NAILA C. SOLER ; HEINEMANN, MARCOS BRYAN ; GUIMARÃES, ANA M. S.. Complete Genome Sequencing of Mycobacterium bovis SP38 and Comparative Genomics of Mycobacterium bovis and M. tuberculosis Strains. Frontiers in Microbiology. v. 8, p. 2389, 2017. Qualis: A1
80.	ZIMPEL, CRISTINA KRAEMER ; BRUM, J. S. ; SOUZA, A. F. ; BIONDO, A. W. ; PEROTTA, J. H. ; DIB, C. C. ; Bonat, Marcelo ; FERREIRA NETO, JOSÉ SOARES ; BRANDAO, P. E. ; HEINEMANN, MARCOS BRYAN ; GUIMARÃES, A. M. S.. Mycobacterium bovis in a European bison (Bison bonasus) raises concerns about tuberculosis in Brazilian captive wildlife populations: a case report. BMC Research Notes. v. 10, p. xxx, 2017.Qualis: B1

2016

1.	ADHIKARI, K. ; FONTANIL, T. ; Cal, S. ; Mendoza-Revilla, J. ; FUENTES, M. ; Chacon-Duque, J. C. ; AL-SAADI, F. ; JOHANSSON, J. ; QUINTO-SANCHEZ, M. ; JARAMILLO, C. ; ARIAS, W. ; BARQUERA, R. ; MACIN, G. ; GOMEZ-VALDES, J. ; VILLAMIL-RAMIREZ, H. ; HÜNEMEIER, T. ; RAMALLO, V. ; CERQUEIRA, C. C. S. ; HURTADO, M. ; VILLEGAS, V. ; et.al. A genome-wide association scan in admixed Latin Americans identifies loci influencing facial and scalp hair features. Nature Communications. v. 7, p. 10815, 2016. Qualis: A1
2.	ADHIKARI, K. ; FUENTES, M. ; Mendoza-Revilla, J. ; Chacon-Duque, J. C. ; QUINTO-SANCHEZ, M. ; ACUNA-ALONZO, V. ; JARAMILLO, C. ; ARIAS, W. ; BARQUERA, R. ; MACIN, G. ; GOMEZ-VALDES, J. ; VILLAMIL-RAMIREZ, H. ; HÜNEMEIER, T. ; RAMALLO, V. ; CERQUEIRA, C. C. S. ; HURTADO, M. ; VILLEGAS, V. ; GRANJA, V. ; GALLO, C. ; Poletti, G ; et.al. A genome-wide association scan implicates DCHS2, RUNX2, GLI3, PAX1 and EDAR in human facial variation. Nature Communications. v. 7, p. 11616, 2016. Qualis: A1
3.	AFIONIS, STAVROS ; STRINGER, LINDSAY C. ; FAVRETTO, NICOLA ; TOMEI, JULIA ; Buckeridge, Marcos S.. Unpacking Brazil?s Leadership in the Global Biofuels Arena: Brazilian Ethanol Diplomacy in Africa. Global Environmental Politics. v. 16, p. 127-150, 2016. Qualis: Não identificado (GLOBAL ENVIRONMENTAL POLITICS)
4.	ALMEIDA, DIEGO DANTAS ; KITAJIMA, JOÃO PAULO ; NISHIYAMA, MILTON YUTAKA ; CONDOMITTI, GEORGE WILLIAN ; OLIVEIRA, URSULA CASTRO DE ; SETÚBAL, JOÃO CARLOS ; JUNQUEIRA-DE-AZEVEDO, INÁCIO L. M.. The complete mitochondrial genome of Bothrops jararaca (Reptilia, Serpentes, Viperidae). Mitochondrial DNA Part B. v. 1, p. 907-908, 2016. Qualis: B4 (MITOCHONDRIAL DNA PART A)
5.	ALMEIDA, FERNANDA NASCIMENTO ; TUNES, GISELA ; DA COSTA, JULIO CEZAR BRETTAS ; Sabino, Ester Cerdeira ; MENDRONE-JÚNIOR, ALFREDO ; Ferreira, João Eduardo. A provenance model based on declarative specifications for intensive data analyses in hemotherapy information systems. Future Generation Computer Systems. v. 59, p. 105-113, 2016. Qualis: A1
6.	ALVES, JOÃO M. P. ; DE OLIVEIRA, ANDRÉ L. ; SANDBERG, TATIANA O. M. ; MORENO-GALLEGO, JAIME L. ; DE TOLEDO, MARCELO A. F. ; DE MOURA, ELISABETH M. M. ; OLIVEIRA, LILIANE S. ; Durham, Alan M. ; MEHNERT, DOLORES U. ; ZANOTTO, PAOLO M. DE A. ; REYES, ALEJANDRO ; Gruber, Arthur. GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data. Frontiers in Microbiology (Online). v. 7, p. 00269, 2016. Qualis: A1
7.	ANTUNES, LUCIANA PRINCIPAL ; MARTINS, LAYLA FARAGE ; PEREIRA, ROBERTA VERCIANO ; THOMAS, ANDREW MALTEZ ; BARBOSA, DEIBS ; LEMOS, LEANDRO NASCIMENTO ; SILVA, GIANLUCA MAJOR MACHADO ; MOURA, LIVIA MARIA SILVA ; EPAMINO, GEORGE WILLIAN CONDOMITTI ; DIGIAMPIETRI, LUCIANO ANTONIO ; LOMBARDI, KAREN CRISTINA ; RAMOS, PATRICIA LOCOSQUE ; QUAGGIO, RONALDO BENTO ; DE OLIVEIRA, JULIO CEZAR FRANCO ; PASCON, RENATA CASTIGLIONI ; CRUZ, JOÃO BATISTA DA ; DA SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS. Microbial community structure and dynamics in thermophilic composting viewed through metagenomics and metatranscriptomics. Scientific Reports. v. 6, p. 38915, 2016. Qualis: A2
8.	BACCALA, LUIZ A. ; Takahashi, Daniel Y. ; Sameshima, Koichi. Directed Transfer Function: Unified Asymptotic Theory and Some of its Implications. IEEE Transactions on Biomedical Engineering (Print). v. PP, p. 1-11, 2016. Qualis: A1
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59.	Setubal, Joao C. Desconcertos na Ciência. Revista Brasileira de Psicanálise (Impresso). v. 50, p. 145-152, 2016.Qualis: B1
60.	SOCHACKI, JAROSLAW ; DEVALLE, SYLVIE ; REIS, MARCELO ; DE MORAES MACIEL, RENATA ; DA SILVEIRA PAULSEN, BRUNA ; BRENTANI, HELENA ; BELMONTE-DE-ABREU, PAULO SILVA ; REHEN, STEVENS. Generation of iPS cell lines from schizophrenia patients using a non-integrative method. Stem Cell Research. v. 17, p. 97-101, 2016. Qualis: A2
61.	TEIXEIRA, F. R. ; RANDLE, S. J. ; PATEL, S. P. ; MEVISSEN, T. E. T. ; ZENKEVICIUTE, G. ; KOIDE, T. ; KOMANDER, D. ; LAMAN, H.. Gsk3 and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease. Biochemical Journal. v. 473, p. 3563-3580, 2016. Qualis: A2
62.	THOMAS, ANDREW M. ; JESUS, ELIANE C. ; LOPES, ADEMAR ; AGUIAR, SAMUEL ; BEGNAMI, MARIA D. ; ROCHA, RAFAEL M. ; CARPINETTI, PAOLA AVELAR ; CAMARGO, ANAMARIA A. ; HOFFMANN, CHRISTIAN ; FREITAS, HELANO C. ; SILVA, ISRAEL T. ; Nunes, Diana N. ; Setubal, João C. ; DIAS-NETO, Emmanuel. Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling. Frontiers in Cellular and Infection Microbiology. v. 6, p. 00179, 2016. Qualis: A1
63.	TORRES, TATIANA T. Genetics teaching: Carry on celebrating Mendel's legacy. NATURE. v. 534, p. 475-475, 2016. Qualis: A1
64.	VANINA ELIAS, ELIANA ; PEREIRA DE CASTRO, NADIA ; HENRIQUE BALDAN PINEDA, PAULO ; SENS ABUÁZAR, CAROLINA ; APARECIDA BUENO DE TOLEDO OSORIO, CYNTHIA ; GIGLIOLA PINILLA, MABEL ; DANIELA DA SILVA, SABRINA ; ARANHA CAMARGO, ANAMARIA ; ARAUJO SILVA JR, WILSON ; NAPOLITANO E FERREIRA, ELISA ; PAULA BRENTANI, HELENA ; MARIA CARRARO, DIRCE. Epithelial cells captured from ductal carcinoma in situ reveal a gene expression signature associated with progression to invasive breast cancer. OncoTarget. v. 7, p. 75672-75684, 2016. Qualis: A2
65.	VIEIRA GERALDO, MURILO ; IMOTO NAKAYA, HELDER ; TERUKO KIMURA, EDNA. Down-regulation of 14q32-encoded miRNAs and tumor suppressor role for miR-654-3p in papillary thyroid cancer. OncoTarget. v. 1, p. 1-10, 2016. Qualis: A2
66.	VIEIRA, T. S. W. J. ; Vieira, Rafael F.C. ; KRAWCZAK, F. S. ; SOARES, H. S. ; GUIMARÃES, A. M. S. ; BARROS-FILHO, I. R. ; MARCONDES, M. ; LABRUNA, M. B. ; BIONDO, A. W.. Ehrlichia sp. infection in carthorses of low-income owners, Southern Brazil. Comparative Immunology, Microbiology and Infectious Diseases. v. 48, p. 1-5, 2016.Qualis: A1 (COMPARATIVE IMMUNOLOGY, MICROBIOLOGY AND INFECTIOUS DISEASES)
67.	VILLELA, DARINE ; RAMALHO, RODRIGO F. ; SILVA, ADERBAL R. T. ; BRENTANI, HELENA ; SUEMOTO, CLAUDIA K. ; PASQUALUCCI, CARLOS AUGUSTO ; GRINBERG, LEA T. ; KREPISCHI, ANA C. V. ; Rosenberg, Carla. Differential DNA Methylation of MicroRNA Genes in Temporal Cortex from Alzheimer?s Disease Individuals. Neural Plasticity (Online). v. 2016, p. 1-10, 2016. Qualis: A2
68.	VITCOSQUE, GABRIELA LEAL ; RIBEIRO, LILIANE FRAGA COSTA ; DE LUCAS, ROSYMAR COUTINHO ; DA SILVA, TONY MARCIO ; RIBEIRO, LUCAS FERREIRA ; DE LIMA DAMASIO, ANDRÉ RICARDO ; FARINAS, CRISTIANE SANCHEZ ; GONÇALVES, ALINE ZORZETTO LOPES ; SEGATO, FERNANDO ; BUCKERIDGE, MARCOS SILVEIRA ; JORGE, JOÃO ATILIO ; Polizeli, Maria de Lourdes T. M.. The functional properties of a xyloglucanase (GH12) of Aspergillus terreus expressed in Aspergillus nidulans may increase performance of biomass degradation. Applied Microbiology and Biotechnology. v. 100, p. 9133-9144, 2016. Qualis: A2
69.	YUNUSOV, D. ; ANDERSON, L. ; SILVA, L. F. ; WYSOCKA, J. ; EZASHI, T. ; ROBERTS, R. M. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Scientific Reports. v. 6, p. 32753, 2016. Qualis: A2

2015

1.	ADHIKARI, K. ; Reales, G. ; SMITH, A. ; KONCA, E. ; PALMEN, J. ; QUINTO-SANCHEZ, M. ; ACUNA-ALONZO, V. ; JARAMILLO, C. ; ARIAS, W. ; FUENTES, M. ; PIZARRO, M. ; MACIN, G. ; BARQUERA, R. ; GOMEZ-VALDES, J. ; VILLAMIL-RAMIREZ, H. ; HÜNEMEIER, T. ; RAMALLO, V. ; CERQUEIRA, C. C. S. ; GRANJA, V. ; HURTADO, M. ; et.al. A genome-wide association study identifies multiple loci for variation in human ear morphology. Nature Communications. v. 6, p. 7500, 2015. Qualis: A1
2.	AKONDY, RAMA S. ; JOHNSON, PHILIP L. F. ; Nakaya, Helder I. ; EDUPUGANTI, SRILATHA ; MULLIGAN, MARK J. ; LAWSON, BENTON ; MILLER, JOSEPH D. ; Pulendran, Bali ; ANTIA, RUSTOM ; Ahmed, Rafi. Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination. Proceedings of the National Academy of Sciences of the United States of America. v. 112, p. 3050-3055, 2015. Qualis: A1
3.	ALMEIDA, JULIANA ; AZEVEDO, MARIANA DA SILVA ; SPICHER, LIVIA ; GLAUSER, GAÉTAN ; VOM DORP, KATHARINA ; GUYER, LUZIA ; DEL VALLE CARRANZA, ANDREA ; ASIS, RAMÓN ; De Souza, Amanda Pereira ; BUCKERIDGE, MARCOS ; DEMARCO, DIEGO ; BRES, CÉCILE ; ROTHAN, CHRISTOPHE ; PERES, LÁZARO EUSTÁQUIO PEREIRA ; HÖRTENSTEINER, STEFAN ; KESSLER, FÉLIX ; DÖRMANN, PETER ; CARRARI, FERNANDO ; ROSSI, MAGDALENA. Down-regulation of tomato PHYTOL KINASE strongly impairs tocopherol biosynthesis and affects prenyllipid metabolism in an organ-specific manner. Journal of Experimental Botany. v. 67, p. erv504, 2015. Qualis: A1
4.	Amorim, CEG ; ACUNA-ALONZO, V. ; SALZANO, F. M. ; BORTOLINI, M. C. ; HÜNEMEIER, T.. *Differing Evolutionary Histories of the ACTN3R577X Polymorphism among the Major Human Geographic Groups. Plos One. v. 10, p. e0115449, 2015. Qualis: A1**
5.	Anderson, Letícia ; AMARAL, MURILO S. ; BECKEDORFF, FELIPE ; SILVA, LUCAS F. ; Dazzani, Bianca ; Oliveira, Katia C. ; Almeida, Giulliana T. ; GOMES, MONETE R. ; PIRES, DAVID S. ; SETUBAL, JOÃO C. ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq. PLoS Neglected Tropical Diseases (Online). v. 9, p. e0004334, 2015. Qualis: A1
6.	AYUPE, ANA C ; Tahira, Ana C ; CAMARGO, LAUREN ; BECKEDORFF, FELIPE C ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; REIS, Eduardo M. Global analysis of biogenesis, stability and sub-cellular localization of lncRNAs mapping to intragenic regions of the human genome. RNA Biology. v. 12, p. 877-892, 2015. Qualis: A2
7.	AZEVEDO, S. ; BORTOLINI, M. C. ; BONATTO, S. L. ; HÜNEMEIER, T. ; SANTOS, F. ; GONZALEZ-JOSE, R.. Ancient remains and the first peopling of the Americas: Reassessing the Hoyo Negro skull. American Journal of Physical Anthropology,. p. n/a-n/a, 2015. Qualis: A2 (AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY)
8.	BARAU, J. ; GRANDIS, A. ; CARVALHO, V. M. D. A. ; TEIXEIRA, G. S. ; ZAPAROLI, G. H. A. ; DO RIO, M. C. S. ; RINCONES, J. ; BUCKERIDGE, M. S. ; PEREIRA, G. A. G.. Apoplastic and intracellular plant sugars regulate developmental transitions in witches' broom disease of cacao. Journal of Experimental Botany. v. 66, p. 1325-1337, 2015. Qualis: A1
9.	Bisso-Machado, R ; RAMALLO, V. ; PAIXAO-CORTES, V. R. ; DEMARCHI, D. A. ; SANDOVAL, J. R. S. ; GRANARA, A. A. S. ; SALZANO, F. M. ; HÜNEMEIER, T. ; BORTOLINI, M. C.. NAT2 gene diversity and its evolutionary trajectory in the Americas. Pharmacogenomics Journal (Print),. p. 000-000, 2015. Qualis: A2 (PHARMACOGENOMICS JOURNAL)
10.	BOQUETT, J. ; SCHULER-FACCINI, L. ; JOBIM, L. F. ; JOBIM, M. ; FAGUNDES, N. J. R. ; HÜNEMEIER, T.. Self-assessment of Colour Categories and its Relationship with HLA profiling in Brazilian Bone Marrow Donors. Biology of Blood and Marrow Transplantation,. p. n/a-n/a, 2015. Qualis: A1 (BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION)
11.	BORIN, GUSTAVO PAGOTTO ; SANCHEZ, CAMILA CRISTINA ; De Souza, Amanda Pereira ; DE SANTANA, ELIANE SILVA ; DE SOUZA, ALINE TIEPPO ; LEME, ADRIANA FRANCO PAES ; SQUINA, FABIO MARCIO ; BUCKERIDGE, MARCOS ; Goldman, Gustavo Henrique ; OLIVEIRA, JULIANA VELASCO DE CASTRO. Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass. Plos One. v. 10, p. e0129275, 2015. Qualis: A1
12.	BRITO, ANDERSON FERNANDES DE ; BRACONI, CARLA TORRES ; WEIDMANN, MANFRED ; DILCHER, MEIK ; ALVES, JOÃO MARCELO PEREIRA ; GRUBER, ARTHUR ; ZANOTTO, PAOLO MARINHO DE ANDRADE. The pangenome of the Anticarsia gemmatalis multiple nucleopolyhedrovirus (AgMNPV). Genome Biology and Evolution. v. 12, p. evv231, 2015. Qualis: A1
13.	BUCKERIDGE, MARCOS. Árvores urbanas em São Paulo: planejamento, economia e água. Estudos Avançados (Online). v. 29, p. 85-101, 2015. Qualis: A1
14.	CABALLERO, ZULEIMA C ; COSTA-MARTINS, ANDRE G ; FERREIRA, ROBSON C ; PEREIRA ALVES, JOÃO MARCELO ; SERRANO, MYRNA G ; CAMARGO, ERNEY P ; Buck, Gregory A ; MINOPRIO, PAOLA ; GERALDES TEIXEIRA, MARTA M. Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. Parasites & Vectors. v. 8, p. 222, 2015. Qualis: A1
15.	CALAIS, JULIEN BRAGA ; OJOPI, ELIDA BENQUIQUE ; MORYA, E ; Sameshima, K. ; Ribeiro, Sidarta. Experience-dependent upregulation of multiple plasticity factors in the hippocampus during early REM sleep. Neurobiology of Learning and Memory (Print). v. 122, p. 19-27, 2015. Qualis: A1
16.	CARLTON, J. M. ; VOLKMAN, S. K. ; UPLEKAR, S. ; HUPALO, D. N. ; PEREIRA ALVES, J. M. ; CUI, L. ; DONNELLY, M. ; ROOS, D. S. ; HARB, O. S. ; ACOSTA, M. ; READ, A. ; RIBOLLA, P. E. M. ; SINGH, O. P. ; VALECHA, N. ; WASSMER, S. C. ; FERREIRA, M. ; ESCALANTE, A. A.. Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research. The American Journal of Tropical Medicine and Hygiene. v. 93, p. 87-98, 2015. Qualis: A3 (AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGINE)
17.	DE ABREU MEIRELES, DIOGO ; MATEUS DOMINGOS, RENATO ; WEISSMANN GAIARSA, JONAS ; de SOUZA, Robson Francisco ; SOARES NETTO, LUIS EDUARDO. Functional and Biochemical Characterization of the First Ohr Peroxidase Identified in Eukaryotes. FREE RADICAL BIOLOGY AND MEDICINE. v. 87, p. S150, 2015. Qualis: A1 (FREE RADICAL BIOLOGY & MEDICINE)
18.	DE ANDRADE, MARIZA ; RAY, DEBASHREE ; PEREIRA, ALEXANDRE C. ; SOLER, J'LIA P.. Global Individual Ancestry Using Principal Components for Family Data. Human Heredity. v. 80, p. 1-11, 2015. Qualis: Não identificado (HUMAN HEREDITY)
19.	DE AZEVEDO-MARTINS, ALLAN C ; Alves, João MP ; GARCIA DE MELLO, FERNANDO ; VASCONCELOS, ANA TEREZA R ; DE SOUZA, WANDERLEY ; EINICKER-LAMAS, MARCELO ; MOTTA, MARIA CRISTINA M. Biochemical and phylogenetic analyses of phosphatidylinositol production in Angomonas deanei, an endosymbiont-harboring trypanosomatid. Parasites & Vectors. v. 8, p. 247, 2015. Qualis: A1
20.	DE BAUMONT, ANGELICA ; Maschietto, Mariana ; Lima, Leandro ; Carraro, Dirce Maria ; OLIVIERI, ELOISA HELENA ; FIORINI, ALEX ; BARRETA, LUIZ ANDRÉ NARDIN ; PALHA, JOANA ALMEIDA ; Belmonte-de-Abreu, Paulo ; MOREIRA FILHO, CARLOS ALBERTO ; BRENTANI, HELENA. Innate immune response is differentially dysregulated between bipolar disease and schizophrenia. Schizophrenia Research (Print). v. 161, p. 215-221, 2015. Qualis: A1
21.	DE SOUZA, A. P. ; KAMEI, C. L. A. ; TORRES, A. F. ; PATTATHIL, S. ; HAHN, M. G. ; TRINDADE, L. M. ; BUCKERIDGE, M. S.. How cell wall complexity influences saccharification efficiency in Miscanthus sinensis. Journal of Experimental Botany (Online). v. 66, p. 4351-4365, 2015. Qualis: A1
22.	De Souza, Amanda Pereira ; COCURON, JEAN-CHRISTOPHE ; GARCIA, ANA CAROLINA ; ALONSO, ANA PAULA ; Buckeridge, Marcos S.. CHANGES IN WHOLE-PLANT METABOLISM DURING GRAIN-FILLING STAGE IN SORGHUM BICOLOR L. (MOENCH) GROWN UNDER ELEVATED CO2 AND DROUGHT. PLANT PHYSIOLOGY. v. 169, p. pp.01054.2015-1765, 2015. Qualis: A1
23.	DIAZ, RICARDO SOBHIE ; INOCÊNCIO, LILIAN A. ; SUCUPIRA, Maria Cecilia Araripe ; PEREIRA, ANDERSON ALVARENGA ; HUNTER, JAMES ; FERREIRA, J. E. ; ARAÚJO, LUCIANO V. ; SOUZA, DENISE F. C. ; SABINO, Ester Cerdeira. The Virological and Immunological Characteristics of the HIV-1-Infected Population in Brazil: From Initial Diagnosis to Impact of Antiretroviral Use. Plos One. v. 10, p. e0139677, 2015. Qualis: A1
24.	Duarte, N.E. ; Giolo, S.R. ; de Andrade, M. ; SOLER, J. M. P.. On the Equivalence of Methods for Population Stratification and their Application in Genetic Association Studies. Revista Brasileira de Biometria. v. 33, p. 494-507, 2015.Qualis: C
25.	Ferreira, Elisa Napolitano ; DE CAMPOS MOLINA, GUSTAVO ; Puga, Renato David ; NAGAI, MARIA APARECIDA ; CAMPOS, ANTÔNIO HUGO JOSÉ FROES MARQUES ; GUIMARÃES, GUSTAVO CARDOSO ; Nunes, Diana Noronha ; Pasqualini, Renata ; ARAPD, WADIH ; BRENTANI, HELENA ; Dias-Neto, Emmanuel ; BRENTANI, RICARDO R. ; Carraro, Dirce Maria. Linear mRNA amplification approach for RNAseq from limited amount of RNA. Gene (Amsterdam). v. 564, p. 220-227, 2015. Qualis: A4
26.	FONTANETTI RODRIGUES, MARIA GABRIELA ; SOARES, MURILO RACY ; RAMOS, ESTER SILVEIRA ; Giuliatti, Silvana. Analysis of Global DNA Methylation in Irradiated Fig Selections. American Journal of Plant Sciences. v. 06, p. 2257-2262, 2015. Qualis: C
27.	GABRIEL, HELOISA B. ; DE AZEVEDO, MAURO F. ; PALMISANO, GIUSEPPE ; WUNDERLICH, GERHARD ; KIMURA, EMÍLIA A. ; KATZIN, ALEJANDRO M. ; Alves, João M. P.. Single-target high-throughput transcription analyses reveal high levels of alternative splicing present in the FPPS/GGPPS from Plasmodium falciparum. Scientific Reports. v. 5, p. 18429, 2015. Qualis: A2
28.	GHILARDI-LOPES, NATALIA PIRANI ; TURRA, ALEXANDER ; Buckeridge, Marcos S. ; SILVA, AMANDA CRISTINA ; BERCHEZ, FLÁVIO AUGUSTO DE SOUZA ; DE OLIVEIRA, VALÉRIA MARQUES. On the perceptions and conceptions of tourists with regard to global environmental changes and their consequences for coastal and marine environments: A case study of the northern São Paulo State coast, Brazil. Marine Policy. v. 57, p. 85-92, 2015. Qualis: A1
29.	ALMEIDA, GIULLIANA T. ; LAGE, REGINA C. G. ; ANDERSON, LETICIA ; VENANCIO, THIAGO M. ; Nakaya, Helder I. ; MIYASATO, PATRÍCIA A. ; ROFATTO, HENRIQUE K. ; ZERLOTINI, ADHEMAR ; NAKANO, ELIANA ; OLIVEIRA, GUILHERME ; Verjovski-Almeida, Sergio. Synergy of Omeprazole and Praziquantel In Vitro Treatment against Schistosoma mansoni Adult Worms. PLoS Neglected Tropical Diseases (Online). v. 9, p. e0004086, 2015. Qualis: A1
30.	GOMES-FILHO, J. V. ; ZARAMELA, L. S. ; Italiani, VCS ; BALIGA, NITIN S. ; Vencio, R.Z.N. ; KOIDE, T.. Sense overlapping transcripts in IS 1341 -type transposase genes are functional non-coding RNAs in archaea. RNA Biology. v. 12, p. 490-500, 2015. Qualis: A2
31.	Guimaraes, Ana Marcia Sa; ZIMPEL, CRISTINA KRAEMER ; IKUTA, CÁSSIA YUMI ; DO NASCIMENTO, NAÍLA CANNES ; DOS SANTOS, ANDREA PIRES ; Messick, Joanne Belle ; HEINEMANN, MARCOS BRYAN ; FERREIRA NETO, JOSÉ SOARES ; BRANDÃO, PAULO EDUARDO. Draft Genome Sequence of Mycobacterium bovis Strain SP38, a Pathogenic Bacterium Isolated from a Bovine in Brazil. Genome Announcements. v. 3, p. e00511-15, 2015. Qualis: B3
32.	GUIMARÃES, LILIAN O. ; WUNDERLICH, GERHARD ; Alves, João M. P. ; BUENO, MARINA G. ; RÖHE, FABIO ; CATÃO-DIAS, JOSÉ L. ; NEVES, AMANDA ; MALAFRONTE, ROSELY S. ; CURADO, IZILDA ; DOMINGUES, WILSON ; KIRCHGATTER, KARIN. Merozoite surface protein-1 genetic diversity in Plasmodium malariae and Plasmodium brasilianum from Brazil. BMC Infectious Diseases (Online). v. 15, p. 529, 2015. Qualis: A3
33.	HAGAN, THOMAS ; Nakaya, Helder I. ; SUBRAMANIAM, SHANKAR ; Pulendran, Bali. Systems vaccinology: Enabling rational vaccine design with systems biological approaches. Vaccine (Guildford). v. 1, p. 1, 2015. Qualis: A2
34.	HÜNEMEIER, T.; Bisso-Machado, R ; SALZANO, F. M. ; BORTOLINI, M. C.. Native American ancestry leads to complexity in 5-HTTLPR polymorphism association studies. Molecular Psychiatry,. p. 000-000, 2015. Qualis: A1 (MOLECULAR PSYCHIATRY)
35.	KLEINMAN, A. ; CAETANO, S. C. ; BRENTANI, H. ; ROCCA, C. C. D. A. ; DOS SANTOS, B. ; ANDRADE, E. R. ; ZENI, C. P. ; TRAMONTINA, S. ; ROHDE, L. A. P. ; Lafer, B.. Attention-based classification pattern, a research domain criteria framework, in youths with bipolar disorder and attention-deficit/hyperactivity disorder. Australian and New Zealand Journal of Psychiatry (Print). v. 49, p. 255-265, 2015. Qualis: A1
36.	MARQUES, LUCAS M. ; GUIMARÃES, ANA M. S. ; MARTINS, HELLEN B. ; REZENDE, IZADORA S. ; BARBOSA, MAYSA S. ; CAMPOS, GUILHERME B. ; DO NASCIMENTO, NAÍLA C. ; DOS SANTOS, ANDREA P. ; AMORIM, ALINE T. ; SANTOS, VERENA M. ; Messick, Joanne B. ; Timenetsky, Jorge. Genome Sequence of Ureaplasma diversum Strain ATCC 49782. Genome Announcements. v. 3, p. e00314-15, 2015. Qualis: B3
37.	Maschietto, Mariana ; TAHIRA, ANA C ; Puga, Renato ; Lima, Leandro ; MARIANI, DANIEL ; DA SILVEIRA PAULSEN, BRUNA ; Belmonte-de-Abreu, Paulo ; VIEIRA, HENRIQUE ; KREPISCHI, ANA CV ; Carraro, Dirce M ; Palha, Joana A ; REHEN, STEVENS ; BRENTANI, HELENA. Co-expression network of neural-differentiation genes shows specific pattern in schizophrenia. BMC Medical Genomics. v. 8, p. 1-15, 2015. Qualis: A3
38.	MENDES DE REZENDE, FERNANDA ; PEREIRA DE SOUZA, AMANDA ; SILVEIRA BUCKERIDGE, MARCOS ; MARIA FURLAN, CLÁUDIA. Is guava phenolic metabolism influenced by elevated atmospheric CO2?. Environmental Pollution (1987). v. 196, p. 483-488, 2015. Qualis: B4
39.	METCALFE, CUSHLA J. ; OLIVEIRA, SARAH G. ; GAIARSA, JONAS W. ; AITKEN, KAREN S. ; CARNEIRO, MONALISA S. ; ZATTI, FERNANDA ; Van Sluys, Marie-Anne. Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane. Journal of Experimental Botany. v. 66, p. 4239-4250, 2015. Qualis: A1
40.	NAKAYA, H. I.; Pulendran, B.. Vaccinology in the era of high-throughput biology. Philosophical Transactions - Royal Society. Biological Sciences (Print). v. 370, p. 20140146-20140146, 2015. Qualis: Não identificado (BIOLOGICAL SCIENCES)
41.	NAKAYA, HELDER I.; HAGAN, THOMAS ; DURAISINGHAM, SAI S. ; LEE, EVA K. ; Kwissa, Marcin ; Rouphael, Nadine ; FRASCA, DANIELA ; GERSTEN, MERRIL ; MEHTA, ANEESH K. ; GAUJOUX, RENAUD ; Li, Gui-Mei ; GUPTA, SHAKTI ; Ahmed, Rafi ; MULLIGAN, MARK J. ; SHEN-ORR, SHAI ; BLOMBERG, BONNIE B. ; SUBRAMANIAM, SHANKAR ; Pulendran, Bali. Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures. Immunity (Cambridge, Mass.). v. 43, p. 1186-1198, 2015. Qualis: A1
42.	Nakaya, Helder I; BRUNA-ROMERO, OSCAR. Is the gut microbiome key to modulating vaccine efficacy?. Expert Review of Vaccines. v. 1, p. 1-3, 2015. Qualis: A2
43.	NAVARRO, ISABELA CUNHA ; FERREIRA, FREDERICO MORAES ; Nakaya, Helder I. ; BARON, MONIQUE ANDRADE ; VILAR-PEREIRA, GLÁUCIA ; PEREIRA, ISABELA RESENDE ; SILVA, ANA MARIA GONÇALVES ; REAL, JULIANA MONTE ; DE BRITO, THALES ; CHEVILLARD, CHRISTOPHE ; LANNES-VIEIRA, JOSELI ; KALIL, JORGE ; CUNHA-NETO, EDECIO ; FERREIRA, LUDMILA RODRIGUES PINTO. MicroRNA Transcriptome Profiling in Heart of Trypanosoma cruzi-Infected Mice: Parasitological and Cardiological Outcomes. PLoS Neglected Tropical Diseases (Online). v. 9, p. e0003828, 2015. Qualis: A1
44.	NUNES, DIANA N. ; Dias-Neto, Emmanuel ; CARDÓ-VILA, MARINA ; EDWARDS, JULIANNA K. ; DOBROFF, ANDREY S. ; GIORDANO, RICARDO J. ; MANDELIN, JAMI ; BRENTANI, HELENA P. ; HASSELGREN, CATRIN ; YAO, VIRGINIA J. ; MARCHIÒ, SERENA ; PEREIRA, CARLOS A. B. ; Passetti, Fabio ; CALIN, GEORGE A. ; SIDMAN, RICHARD L. ; Arap, Wadih ; Pasqualini, Renata. Synchronous down-modulation of miR-17 family members is an early causative event in the retinal angiogenic switch. Proceedings of the National Academy of Sciences of the United States of America. v. 112, p. 3770-5, 2015. Qualis: A1
45.	OKADA, SABRINA SAYORI ; DE OLIVEIRA, EDSON MENDES ; DE ARAÚJO, TOMAZ HENRIQUE ; RODRIGUES, MARIA RITA ; ALBUQUERQUE, RENATA CHAVES ; MORTARA, RENATO ARRUDA ; TANIWAKI, NOEMI NOSOMI ; Nakaya, Helder Imoto ; CAMPA, ANA ; MORENO, ANA CAROLINA RAMOS. Myeloperoxidase in human peripheral blood lymphocytes: Production and subcellular localization. Cellular Immunology (Print). v. 2015, p. 2015, 2015. Qualis: A4
46.	OZAHATA, MINA CINTHO ; Sabino, Ester Cerdeira ; DIAZ, R. S. ; CESAR-JR, ROBERTO M ; FERREIRA, J. E.. Data-intensive analysis of HIV mutations. BMC Bioinformatics. v. 16, p. PMC4344997, 2015. Qualis: A1
47.	PEDRO, S. L. S. ; ALVES, J. M. P. ; BARRETO, A. S. ; LIMA, A. O. S.. Evidence of Positive Selection of Aquaporins Genes from Pontoporia blainvillei during the Evolutionary Process of Cetaceans. Plos One. v. 10, p. e0134516, 2015. Qualis: A1
48.	QUINTO-SANCHEZ, M. ; ADHIKARI, K. ; ACUNA-ALONZO, V. ; CINTAS, C. ; CERQUEIRA, C. C. S. ; RAMALLO, V. ; CASTILLO, L. ; FERRERA, A. ; JARAMILLO, C. ; ARIAS, W. ; FUENTES, M. ; EVERARDO, P. ; AVILA, F. ; GOMEZ-VALDES, J. ; HÜNEMEIER, T. ; GIBBON, S. ; GALLO, C. ; POLETTI, G. ; ROSIQUE, J. ; BORTOLINI, M. C. ; et.al. Facial asymmetry and genetic ancestry in Latin American admixed populations. American Journal of Physical Anthropology,. p. n/a-n/a, 2015. Qualis: A2 (AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY)
49.	ROSA-E-SILVA, JULIO CESAR ; VIRGINIO JUNIOR, LUIZ APARECIDO ; Meola, Juliana ; DENTILLO, DANIEL BLASIOLI ; Ferriani, Rui Alberto ; Giuliatti, Silvana. A system for storing, retrieving, and comparing gene expression information of patients with endometriosis. American Journal of Obstetrics and Gynecology (Print). v. 212, p. 407-407, 2015. Qualis: A1
50.	ROZENCHAN, PATRICIA BORTMAN ; PASINI, FATIMA SOLANGE ; ROELA, ROSIMEIRE A. ; KATAYAMA, MARIA LÚCIA HIRATA ; MUNDIM, FIORITA GONZÁLES LOPES ; BRENTANI, HELENA ; LYRA, EDUARDO C. ; Brentani, Maria Mitzi. Specific upregulation of RHOA and RAC1 in cancer-associated fibroblasts found at primary tumor and lymph node metastatic sites in breast cancer. Tumor Biology. v. 36, p. 9589-9597, 2015. Qualis: A4
51.	SALUM, GIOVANNI ABRAHÃO ; GADELHA, ARY ; PAN, PEDRO MARIO ; MORIYAMA, TAIS SILVEIRA ; GRAEFF-MARTINS, ANA SOLEDADE ; TAMANAHA, ANA CARINA ; ALVARENGA, PEDRO ; KRIEGER, FERNANDA VALLE ; FLEITLICH-BILYK, BACY ; JACKOWSKI, ANDREA ; SATO, JOÃO RICARDO ; BRIETZKE, ELISA ; POLANCZYK, GUILHERME VANONI ; BRENTANI, HELENA ; DE JESUS MARI, JAIR ; DO ROSÁRIO, MARIA CONCEIÇÃO ; MANFRO, GISELE GUS ; BRESSAN, RODRIGO AFFONSECA ; MERCADANTE, MARCOS TOMANIK ; Miguel, Eurípedes Constantino ; et.al. High risk cohort study for psychiatric disorders in childhood: rationale, design, methods and preliminary results. International Journal of Methods in Psychiatric Research (Cessou em 1996). v. 24, p. 58-73, 2015. Qualis: A3
52.	SAMESHIMA, K.; TAKAHASHI, D. Y. ; BACCALÁ, L. A.. On the statistical performance of Granger-causal connectivity estimators. Brain Informatics. v. 2, p. 119-133, 2015. Qualis: Não identificado (BRAIN INFORMATICS)
53.	SCHWARTZ, ALLISON R. ; Potnis, Neha ; TIMILSINA, SUJAN ; WILSON, MARK ; PATANÉ, JOSÉ ; MARTINS, JOAQUIM ; MINSAVAGE, GERALD V. ; DAHLBECK, DOUGLAS ; AKHUNOVA, ALINA ; ALMEIDA, NALVO ; VALLAD, GARY E. ; BARAK, JERI D. ; WHITE, FRANK F. ; MILLER, SALLY A. ; RITCHIE, DAVID ; GOSS, ERICA ; BART, REBECCA S. ; Setubal, João C. ; Jones, Jeffrey B. ; STASKAWICZ, BRIAN J. ; et.al. Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Frontiers in Microbiology (Online). v. 6, p. 535, 2015. Qualis: A1
54.	Setubal, Joao C.; ALMEIDA, NALVO. TCBB Special Section on the Brazilian Symposium on Bioinformatics 2013. IEEE/ACM Transactions on Computational Biology and Bioinformatics (Print). v. 12, p. 499-499, 2015. Qualis: A1
55.	SEVERINO, PATRICIA ; OLIVEIRA, LILIANE SANTANA ; ANDREGHETTO, FLAVIA MAZIERO ; TORRES, NATALIA ; CURIONI, OTAVIO ; CURY, P. M. ; TOPORCOV, TATIANA NATASHA ; PASCHOAL, ALEXANDRE ROSSI ; DURHAM, A. M.. Abstract 3983: MicroRNAs and other small RNA molecules expressed in metastatic and non-metastatic oral squamous cell carcinoma. CANCER RESEARCH. v. 75, p. 3983-3983, 2015. Qualis: A1
56.	SEVERINO, PATRICIA ; OLIVEIRA, LILIANE SANTANA ; ANDREGHETTO, FLÁVIA MAZIERO ; TORRES, NATALIA ; CURIONI, OTÁVIO ; CURY, PATRICIA MALUF ; TOPORCOV, TATIANA NATASHA ; Paschoal, Alexandre Rossi ; Durham, Alan Mitchell. Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma. BMC Medical Genomics. v. 8, p. 1-15, 2015. Qualis: A3
57.	SILVA-ROCHA, R. ; Pontelli, MC ; FURTADO, G. P. ; ZARAMELA, LIVIA S. ; Koide, Tie. Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum. Plos One. v. 10, p. e0129215, 2015. Qualis: A1
58.	SIMÕES, SÉRGIO N ; MARTINS, DAVID C ; PEREIRA, CARLOS AB ; Hashimoto, Ronaldo F ; BRENTANI, HELENA. NERI: network-medicine based integrative approach for disease gene prioritization by relative importance. BMC Bioinformatics. v. 16, p. S9, 2015. Qualis: A1
59.	SKOGLUND, P. ; MALLICK, S. ; BORTOLINI, M. C. ; CHENNAGIRI1, N. ; HÜNEMEIER, T. ; Petzl-Erler, ML ; SALZANO, F. M. ; Patterson, N ; REICH, D.. Genetic evidence for two founding populations of the Americas. Nature (London). v. 00, p. 000-000, 2015. Qualis: A1
60.	SOUZA, GLAUCIA MENDES ; VICTORIA, R. L. ; VERDADE, L. M. ; JOLY, C. A. ; NETTO, P. E. A. ; CRUZ, C. H. B. ; CANTARELLA, H. ; CHUM, H. ; CORTEZ, L. A. B. ; DIAZ-CHAVEZ, R. ; FERNANDES, E. ; FINCHER, G. ; FINCHER, G. B. ; GOLDEMBERG, J. ; NOGUEIRA, L. A. H. ; HUNTLEY, B. J. ; JOHNSON, F. X. ; KAFFKA, S. ; KARP, A. ; SLUYS MAV. ; et.al. SCOPE Bioenergy and Sustainability Technical Summary. Bioenergy and Sustainability bridging the gaps. v. 72, p. 1-779, 2015.Qualis: Não identificado (BIOENERGY AND SUSTAINABILITY BRIDGING THE GAPS)
61.	SWARNKAR, TRIPTI ; SIMÕES, SERGIO NERY ; ANURA, ANJI ; BRENTANI, HELENA ; CHATTERJEE, JYOTIRMOY ; HASHIMOTO, RONALDO FUMIO ; MARTINS, DAVID CORREA ; MITRA, PABITRA. Identifying dense subgraphs in protein-protein interaction network for gene selection from microarray data. Network Modeling Analysis in Health Informatics and Bioinformatics. v. 4, p. 1-18, 2015. Qualis: Não identificado (NETWORK MODELING ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS)
62.	TAVARES, E. Q. P. ; DE SOUZA, A. P. ; BUCKERIDGE, M. S.. How endogenous plant cell-wall degradation mechanisms can help achieve higher efficiency in saccharification of biomass. Journal of Experimental Botany (Online). v. 66, p. 4133-4143, 2015. Qualis: A1
63.	TAVARES, EVELINE Q.P. ; Buckeridge, Marcos S.. DO PLANT CELL WALLS HAVE A CODE?. Plant Science (Limerick). v. xx, p. xxx-xxxx, 2015. Qualis: A1
64.	UREN, PHILIP J. ; VO, DAT T. ; ROSA DE ARAUJO, PATRICIA ; PÖTSCHKE, REBECCA ; BURNS, SUZANNE C. ; BAHRAMI-SAMANI, EMAD ; QIAO, MEI ; DE SOUSA ABREU, RAQUEL ; Nakaya, Helder I ; CORREA, BRUNA R. ; KÜHNÖL, CASPAR ; ULE, JERNEJ ; MARTINDALE, JENNIFER L. ; ABDELMOHSEN, KOTB ; GOROSPE, MYRIAM ; SMITH, ANDREW D. ; PENALVA, LUIZ O.F.. The RNA-binding protein Musashi1 is a central regulator of adhesion pathways in glioblastoma. Molecular and Cellular Biology (Print). v. 1, p. MCB.00410-15, 2015. Qualis: Não identificado (MOLECULAR AND CELLULAR BIOLOGY)
65.	VIEIRA, LEILA DO NASCIMENTO ; DOS ANJOS, KARINA GOULART ; FAORO, HELISSON ; FRAGA, HUGO PACHECO DE FREITAS ; GRECO, THIAGO MACHADO ; PEDROSA, FÁBIO DE OLIVEIRA ; DE SOUZA, EMANUEL MALTEMPI ; ROGALSKI, MARCELO ; de SOUZA, Robson Francisco ; GUERRA, MIGUEL PEDRO. Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences. Current Genetics. v. NA, p. 1-11, 2015. Qualis: A3
66.	VIEIRA, NATASSIA M. ; ELVERS, INGEGERD ; ALEXANDER, MATTHEW S. ; MOREIRA, YURI B. ; ERAN, ALAL ; GOMES, JULIANA P. ; MARSHALL, JAMIE L. ; KARLSSON, ELINOR K. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; LINDBLAD-TOH, KERSTIN ; KUNKEL, LOUIS M. ; Zatz, Mayana. Jagged 1 Rescues the Duchenne Muscular Dystrophy Phenotype. Cell (Cambridge). v. 163, p. 1204-1213, 2015. Qualis: A1
67.	Vieira, R.F.C. ; VIDOTTO, O ; VIEIRA, T. S. W. J. ; GUIMARÃES, A. M. S. ; DOS SANTOS, A. P. ; DO NASCIMENTO, NAÍLA CANNES ; MARTINS, T. F. ; LABRUNA, M. B. ; MARCONDES, M. ; BIONDO, A. W. ; MESSICK, J. B.. Molecular investigation of hemotropic mycoplasmas in human beings, dogs and horses in a rural settlement in Southern Brazil. Revista do Instituto de Medicina Tropical de São Paulo. v. 57, p. XX, 2015.Qualis: B1
68.	VIEIRA, T. S. W. J. ; VIDOTTO, O. ; GUIMARAES, A. M. S. ; SANTOS, A. P. ; NASCIMENTO, N. C. ; FINGER, M. A. P. ; BARROS-FILHO, I. R. ; DORNBUSCH, P. T. ; Biondo, Alexander W. ; Vieira, Rafael F.C. ; MESSICK, J. B.. Use of pan-hemoplasma PCR for screening horses highly exposed to tick bites from southern Brazil. Semina. Ciências Agrárias (Online). v. 36, p. 291-294, 2015.Qualis: Não identificado (CIÊNCIAS AGRÁRIAS)
69.	VIRGINIO JUNIOR, L. A. ; MEOLA, J. ; DENTILLO, D. B. ; ROSA E SILVA, Júlio César ; FERRIANI, Rui Alberto ; SILVANA GIULIATTI. System for Storing, Recovering, and Comparing Gene Expression Information from Patients with Endometriosis. Journal of Health Informatics. v. 7, p. 116-120, 2015.Qualis: B3
70.	Yamaguti, Maurício ; Oliveira, Rosângela C ; MARQUES, LUCAS M ; Buzinhani, Melissa ; BUIM, MARCOS R ; Neto, Renata L ; GUIMARÃES, ANA MÁRCIA S ; Timenetsky, Jorge. Molecular characterisation of Mycoplasma hyorhinis isolated from pigs using pulsed-field gel electrophoresis and 16S rRNA sequencing. Veterinary Record Open. v. 2, p. e000093, 2015. Qualis: C
71.	YU, DONGMEI ; MATHEWS, CAROL A. ; SCHARF, JEREMIAH M. ; NEALE, BENJAMIN M. ; DAVIS, LEA K. ; GAMAZON, ERIC R. ; DERKS, ESKE M. ; EVANS, PATRICK ; EDLUND, CHRISTOPHER K. ; CRANE, JACQUELYN ; FAGERNESS, JESEN A. ; OSIECKI, LISA ; GALLAGHER, PATIENCE ; GERBER, GLORIA ; HADDAD, STEPHEN ; ILLMANN, CORNELIA ; MCGRATH, LAUREN M. ; MAYERFELD, CATHERINE ; AREPALLI, SAMPATH ; SAMAIA, H. B. ; et.al. Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette?s Syndrome and OCD. The American Journal of Psychiatry. v. 172, p. 82-93, 2015. Qualis: A1
72.	ZHANG, YUNZENG ; JALAN, NEHA ; ZHOU, XIAOFENG ; GOSS, ERICA ; Jones, Jeffrey B ; Setubal, João C ; DENG, XIAOLING ; WANG, NIAN. Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas. The ISME Journal (Print). v. 15, p. 1-11, 2015. Qualis: A1
73.	ZIMPEL, CRISTINA KRAEMER ; GRAZZIOTTIN, A. L. ; BARROS-FILHO, I. R. ; GUIMARÃES, A. M. S. ; SANTOS, L. C. ; MORAES, W. ; CUBAS, Z. S. ; OLIVEIRA, M. J. ; PITUCO, E. M. ; LARA, M. C. C. S. H. ; VILLALOBOS, E. M. C. ; SILVA, L. M. P. ; CUNHA, E. M. S. ; CASTRO, V. ; BIONDO, A. W.. Occurrences of antibodies anti -Toxoplasma gondii, Neospora caninum and Leptospira interrogans in a captive deer herd in Southern Brazil. Revista Brasileira de Parasitologia Veterinária (Online). v. 24, p. 482-487, 2015.Qualis: A2

2014

1.	Arenque, Bruna C. ; GRANDIS, ADRIANA ; POCIUS, OLIDAN ; DE SOUZA, AMANDA P. ; Buckeridge, Marcos S.. Responses of Senna reticulata, a legume tree from the Amazonian floodplains, to elevated atmospheric CO2 concentration and waterlogging. Trees (Berlin. Print). v. 28, p. 1021-1034, 2014. Qualis: Não identificado (PRINT))
2.	BALEOTTI, WILSON ; RUIZ, MARCELO ORTEGA ; FABRON, ANTONIO ; CASTILHO, LILIAN ; Giuliatti, Silvana ; Donadi, Eduardo Antonio. *HLA-DRB1 07:01 allele is primarily associated with the Diego a alloimmunization in a Brazilian population. Transfusion (Arlington, Va.). v. 54, p. n/a-n/a, 2014. Qualis: A3**
3.	BASTOS, ELEN PEREIRA ; BRENTANI, HELENA ; PASINI, FATIMA SOLANGE ; SILVA, ADERBAL RUY T. ; TORRES, CESAR HENRIQUE ; Puga, Renato David ; OLIVIERI, ELOISA HELENA RIBEIRO ; PIOVEZANI, AMANDA RUSISKA ; PEREIRA, CARLOS ALBERTO DE BRAGANÇA ; MACHADO-LIMA, ARIANE ; Carraro, Dirce Maria ; Brentani, Maria Mitzi. MicroRNAs Discriminate Familial from Sporadic Non-BRCA1/2 Breast Carcinoma Arising in Patients ≤35 Years. Plos One. v. 9, p. e101656, 2014. Qualis: A1
4.	BUCKERIDGE, MARCOS S.; DE SOUZA, AMANDA P.. Breaking the -Glycomic Code- of Cell Wall Polysaccharides May Improve Second-Generation Bioenergy Production from Biomass. BioEnergy Research. v. first, p. 000-000, 2014. Qualis: A1
5.	Cappi, Carolina ; Hounie, Ana Gabriela ; MARIANI, DANIEL B. ; DINIZ, JULIANA BELO ; SILVA, ADERBAL R. T. ; REIS, VIVIANE N. S. ; BUSSO, ARIANE F. ; SILVA, AMANDA GONÇALVES ; FIDALGO, FELIPE ; ROGATTO, SILVIA REGINA ; MIGUEL, EURIPEDES C. ; KREPISCHI, ANA C. ; BRENTANI, HELENA. An Inherited Small Microdeletion at 15q13.3 in a Patient with Early- Onset Obsessive-Compulsive Disorder. Plos One. v. 9, p. e110198, 2014. Qualis: A1
6.	Capuani, Ligia ; BIERRENBACH, ANA LUIZA ; ABREU, FATIMA ; TAKECIAN, PEDRO LOSCO ; FERREIRA, J. E. ; SABINO, Ester Cerdeira. Accuracy of a probabilistic record-linkage methodology used to track blood donors in the Mortality Information System database. Cadernos de Saúde Pública (ENSP. Impresso). v. 30, p. 1623-1632, 2014. Qualis: Não identificado (IMPRESSO))
7.	CARDOSO, GISELE ANTONIAZZI ; MATIOLLI, CLEVERSON CARLOS ; AZEREDO-ESPIN, ANA MARIA LIMA DE ; Torres, Tatiana Teixeira. Selection and Validation of Reference Genes for Functional Studies in the Calliphoridae Family. Journal of Insect Science (Online). v. 14, p. 1-15, 2014. Qualis: C
8.	CERQUEIRA, C. C. S. ; HÜNEMEIER, T. ; GOMEZ-VALDES, J. ; RAMALLO, V. ; VOLASKO-KRAUSE, C. D. ; BARBOSA, A. A. L. ; VARGAS-PINILLA, P. ; DORNELLES, R. C. ; LONGO, D. ; Rothhammer F ; BEDOYA, G. ; CANIZALES-QUINTEROS, S. ; ACUNA-ALONZO, V. ; Gallo, C ; POLETTI, G. ; GONZALEZ-JOSE, R. ; SALZANO, F. M. ; CALLEGARI-JACQUES, S. M. ; SCHULER-FACCINI, L. ; RUIZ-LINARES, A ; et.al. Implications of the Admixture Process in Skin Color Molecular Assessment. Plos One. v. 9, p. e96886, 2014. Qualis: A1
9.	Cruz, Guilherme M. Q. ; METCALFE, CUSHLA J. ; de Setta, Nathalia ; CRUZ, EDGAR A. O. ; VIEIRA, ANDRÉIA PRATA ; MEDINA, ROSARIO ; Van Sluys, Marie-Anne. Virus-Like Attachment Sites and Plastic CpG Islands: Landmarks of Diversity in Plant Del Retrotransposons. Plos One. v. 9, p. e97099, 2014. Qualis: A1
10.	DA SILVA, SABRINA DANIELA ; ALAOUI-JAMALI, MOULAY A. ; Soares, Fernando Augusto ; Carraro, Dirce Maria ; Brentani, Helena Paula ; HIER, MICHAEL ; ROGATTO, SILVIA REGINA ; KOWALSKI, LUIZ PAULO. TWIST1 is a molecular marker for a poor prognosis in oral cancer and represents a potential therapeutic target. Cancer (Print). v. 120, p. 352-362, 2014. Qualis: A1
11.	DE ABREU MEIRELES, DIOGO ; MATEUS DOMINGOS, RENATO ; de SOUZA, Robson Francisco ; SOARES NETTO, LUIS EDUARDO. Distribution and Classification of Cys-Based Proteins of the Ohr/OsmC Family. FREE RADICAL BIOLOGY AND MEDICINE. v. 76, p. S142, 2014. Qualis: A1 (FREE RADICAL BIOLOGY & MEDICINE)
12.	DE ARAÚJO, ÉRICA SARA SOUZA ; MARCHI, FABIO ALBUQUERQUE ; RODRIGUES, TATIANE CRISTINA ; VIEIRA, HENRIQUE CURSINO ; KUASNE, HELLEN ; ACHATZ, MARIA ISABEL WADDINGTON ; MOREDO, LUCIANA FACURE ; DE SÁ, BIANCA COSTA SOARES ; NETO, JOÃO PEREIRA DUPRAT ; Brentani, Helena Paula ; Rosenberg, Carla ; Carraro, Dirce Maria ; KREPISCHI, ANA CRISTINA VICTORINO. Genome-wide DNA methylation profile of leukocytes from melanoma patients with and without CDKN2A mutations. Experimental and Molecular Pathology (Print). v. 97, p. 425-432, 2014. Qualis: A2
13.	de Setta, Nathalia ; MONTEIRO-VITORELLO, CLÁUDIA BARROS ; METCALFE, CUSHLA JANE ; CRUZ, GUILHERME MARCELO ; DEL BEM, LUIZ EDUARDO ; Vicentini, Renato ; NOGUEIRA, FÁBIO TEBALDI ; CAMPOS, ROBERTA ALVARES ; NUNES, SIDENY LIMA ; TURRINI, PAULA CRISTINA ; VIEIRA, ANDREIA PRATA ; OCHOA CRUZ, EDGAR ANDRÉS ; CORRÊA, TATIANA CAROLINE ; HOTTA, CARLOS TAKESHI ; de Mello Varani, Alessandro ; VAUTRIN, SONIA ; DA TRINDADE, ADILSON SILVA ; DE MENDONÇA VILELA, MARIANE ; LEMBKE, CAROLINA GIMILIANI ; SLUYS MAV. ; et.al. Building the sugarcane genome for biotechnology and identifying evolutionary trends. BMC GENOMICS. v. 15, p. 540, 2014. Qualis: A2
14.	DEL VALLE, PAULO ROBERTO ; MILANI, CINTIA ; Brentani, Maria Mitzi ; Katayama, Maria Lucia Hirata ; LYRA, EDUARDO CARNEIRO DE ; Carraro, Dirce Maria ; BRENTANI, HELENA ; Puga, Renato ; LIMA, LEANDRO A. ; ROZENCHAN, PATRICIA BORTMAN ; NUNES, BÁRBARA DOS SANTOS ; GÓES, JOÃO CARLOS GUEDES SAMPAIO ; Folgueira, Maria Aparecida Azevedo Koike. Transcriptional profile of fibroblasts obtained from the primary site, lymph node and bone marrow of breast cancer patients. Genetics and Molecular Biology (Impresso). v. 37, p. 480-489, 2014. Qualis: A4
15.	DEOCESANO-PEREIRA, C. ; AMARAL, M. S. ; PARREIRA, K. S. ; AYUPE, A. C. ; JACYSYN, J. F. ; AMARANTE-MENDES, G. P. ; REIS, E. M. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Long non-coding RNA INXS is a critical mediator of BCL-XS induced apoptosis. Nucleic Acids Research. v. 42, p. 8343-8355, 2014. Qualis: A1
16.	DO NASCIMENTO, NAÍLA C ; DOS SANTOS, ANDREA P ; CHU, YUEFENG ; GUIMARAES, ANA ; BAIRD, AUBREY N ; WEIL, ANN B ; Messick, Joanne B. Microscopy and genomic analysis of Mycoplasma parvum strain Indiana. Veterinary Research. v. 45, p. 86, 2014. Qualis: A1
17.	DUARTE, NUBIA E. ; GIOLO, SUELY R. ; PEREIRA, ALEXANDRE C. ; DE ANDRADE, MARIZA ; SOLER, JÚLIA P.. Using the theory of added-variable plot for linear mixed models to decompose genetic effects in family data. Statistical applications in genetics and molecular biology. v. 13, p. 359-378, 2014. Qualis: B1
18.	FERREIRA, ARI J. S. ; SIAM, RANIA ; Setubal, João C. ; MOUSTAFA, AHMED ; SAYED, AHMED ; CHAMBERGO, FELIPE S. ; DAWE, ADAM S. ; GHAZY, MOHAMED A. ; SHARAF, HAZEM ; OUF, AMGED ; ALAM, INTIKHAB ; ABDEL-HALEEM, ALYAA M. ; LEHVASLAIHO, HEIKKI ; RAMADAN, EMAN ; ANTUNES, ANDRÉ ; STINGL, ULRICH ; ARCHER, JOHN A. C. ; JANKOVIC, BORIS R. ; SOGIN, MITCHELL ; BAJIC, VLADIMIR B. ; et.al. Core Microbial Functional Activities in Ocean Environments Revealed by Global Metagenomic Profiling Analyses. Plos One. v. 9, p. e97338, 2014. Qualis: A1
19.	FERREIRA, S. C. ; DE ALMEIDA-NETO, C. ; NISHIYA, A. S. ; DI-LORENZO-OLIVEIRA, C. ; FERREIRA, J. E. ; ALENCAR, C. S. ; LEVI, J. E. ; SALLES, N. A. ; MENDRONE-JUNIOR, A. ; SABINO, E. C.. Prevalence of Treponema pallidum DNA among blood donors with two different serologic tests profiles for syphilis in São Paulo, Brazil. Vox Sanguinis (Basel. 1956). v. 106, p. 376-378, 2014. Qualis: Não identificado (1956))
20.	FERREIRA, S. C. ; DE ALMEIDA-NETO, C. ; NISHIYA, A. S. ; OLIVEIRA, C. D. L. ; FERREIRA, J. E. ; ALENCAR, C. S. ; LEVI, J. E. ; SALLES, N. A. ; MENDRONE JR., A. ; SABINO, E. C.. Demographic, risk factors and motivations among blood donors with reactive serologic tests for syphilis in São Paulo, Brazil. Transfusion Medicine (Print). v. 24, p. 169-175, 2014. Qualis: B1
21.	FIGUEIREDO, NANCY BUENO ; CESTARI, SÍLVIA HELENA ; CONDE, SANDRO JOSÉ ; LUVIZOTTO, RENATA AZEVEDO MELO ; DE SIBIO, MARIA TERESA ; PERONE, DENISE ; KATAYAMA, MARIA LÚCIA HIRATA ; Carraro, Dirce Maria ; Brentani, Helena Paula ; Brentani, Maria Mitzi ; NOGUEIRA, CÉLIA REGINA. Estrogen-Responsive Genes Overlap with Triiodothyronine-Responsive Genes in a Breast Carcinoma Cell Line. The Scientific World Journal. v. 2014, p. 1-7, 2014. Qualis: B1
22.	Florence, G. ; Kurths, J. ; Machado, B. S. ; Fonoff, E. T. ; Cerdeira, H. A. ; Teixeira, M. J. ; Sameshima, K.. Neuronal excitability level transition induced by electrical stimulation. The European Physical Journal. Special Topics. v. 223, p. 2913-2922, 2014. Qualis: Não identificado (SPECIAL TOPICS)
23.	FRAGOSO, TIAGO M. ; GIOLO, SUELY R. ; PEREIRA, ALEXANDRE C. ; DE ANDRADE, MARIZA ; SOLER, JULIA M. P.. Using Item Response Theory to Model Multiple Phenotypes and Their Joint Heritability in Family Data. Genetic Epidemiology (Print). v. 38, p. n/a-n/a, 2014. Qualis: A3
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26.	Guimaraes, Ana M. S.; Santos, Andrea P. ; DO NASCIMENTO, NAÍLA C. ; Timenetsky, Jorge ; Messick, Joanne B.. Comparative Genomics and Phylogenomics of Hemotrophic Mycoplasmas. Plos One. v. 9, p. e91445, 2014. Qualis: A1
27.	GUIMARÃES, LEYSIMAR R. P. ; SOLER, JULIA M. P. ; LIMA, GIUSEPPINA P. P. ; PAVAN, MARCELO A.. Polyamines in tomato plants grown during an incidence of tospovirus exposure. European Journal of Plant Pathology. v. 140, p. 701-709, 2014. Qualis: A2
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33.	MCGRATH, LAUREN M. ; YU, DONGMEI ; MARSHALL, CHRISTIAN ; DAVIS, LEA K. ; THIRUVAHINDRAPURAM, BHOOMA ; LI, BINGBIN ; Cappi, Carolina ; GERBER, GLORIA ; WOLF, AARON ; SCHROEDER, FREDERICK A. ; OSIECKI, LISA ; O'DUSHLAINE, COLM ; KIRBY, ANDREW ; ILLMANN, CORNELIA ; HADDAD, STEPHEN ; GALLAGHER, PATIENCE ; FAGERNESS, JESEN A. ; BARR, CATHY L. ; BELLODI, LAURA ; SAMAIA, H. B. ; et.al. Copy Number Variation in Obsessive-Compulsive Disorder and Tourette Syndrome: A Cross-Disorder Study. Journal of the American Academy of Child and Adolescent Psychiatry. v. 53, p. 910-919, 2014. Qualis: A1
34.	MEDINA-ACOSTA, ENRIQUE ; NAKAYA, HELDER TAKASHI IMOTO ; PONTILLO, ALESSANDRA ; DE SOUZA CAMPOS FERNANDES, REGINA CÉLIA. Genetic Control of Immune Response and Susceptibility to Infectious Diseases. BioMed Research International. v. 2014, p. 1-3, 2014. Qualis: A3
35.	OH, JASON Z. ; Ravindran, Rajesh ; CHASSAING, BENOIT ; CARVALHO, FREDERIC A. ; MADDUR, MOHAN S. ; BOWER, MAUREEN ; HAKIMPOUR, PAUL ; GILL, KIRAN P. ; NAKAYA, HELDER I. ; YAROVINSKY, FELIX ; SARTOR, R. BALFOUR ; GEWIRTZ, ANDREW T. ; Pulendran, Bali. TLR5-Mediated Sensing of Gut Microbiota Is Necessary for Antibody Responses to Seasonal Influenza Vaccination. Immunity (Cambridge, Mass.). v. 41, p. 478-492, 2014. Qualis: A1
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37.	POO, Y. S. ; Nakaya, H. ; GARDNER, J. ; LARCHER, T. ; SCHRODER, W. A. ; LE, T. T. ; MAJOR, L. D. ; SUHRBIER, A.. CCR2 Deficiency Promotes Exacerbated Chronic Erosive Neutrophil-Dominated Chikungunya Virus Arthritis. Journal of Virology (Print). v. 10, p. 1000, 2014. Qualis: A1
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42.	RODRIGUES, ADRIANA C. ; Ortiz, Paola A. ; COSTA-MARTINS, ANDRÉ G. ; NEVES, LUIS ; GARCIA, HERAKLES A. ; ALVES, JOÃO M.P. ; Camargo, Erney P. ; Alfieri, Silvia C. ; GIBSON, WENDY ; TEIXEIRA, MARTA M.G.. Congopain genes diverged to become specific to Savannah, Forest and Kilifi subgroups of Trypanosoma congolense, and are valuable for diagnosis, genotyping and phylogenetic inferences. Infection, Genetics and Evolution (Print). v. 1, p. 1, 2014. Qualis: A2
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44.	RODRIGUES, VIVIANE D. ; TORRES, TATIANA T. ; OTTOBONI, LAURA M. M.. Bacterial diversity assessment in soil of an active Brazilian copper mine using high-throughput sequencing of 16S rDNA amplicons. Antonie van Leeuwenhoek (Gedrukt),. p. 879-890, 2014. Qualis: B1 (ANTONIE VAN LEEUWENHOEK)
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2013

1.	ALMEIDA, FERNANDA N. ; Sabino, Ester C. ; TUNES, GISELA ; Schreiber, George B. ; B. DA SILVA, PEDRO PAULO S. ; CARNEIRO-PROIETTI, ANNA BARBARA F. ; Ferreira, João Eduardo ; Mendrone-Junior, Alfredo. Predictors of low haematocrit among repeat donors in São Paulo, Brazil: eleven year longitudinal analysis. Transfusion and Apheresis Science. v. 49, p. 553-559, 2013. Qualis: B1
2.	ALVES, J. M. P.; KLEIN, C. C. ; da Silva, Flávia Maia ; COSTA-MARTINS, A. G. ; Serrano, Myrna G. ; Buck, Gregory A ; VASCONCELOS, A. T. R. ; SAGOT, M.-F. ; MOTTA, M. C. M. ; Camargo, Erney P.. Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers. BMC Evolutionary Biology (Online). v. 13, p. 190, 2013. Qualis: A1
3.	Alves, João MP; Serrano, Myrna G. ; da Silva, Flávia Maia ; Voegtly, Logan ; Matveyev, Andrey V. ; Teixeira, Marta M. G. ; Camargo, Erney P. ; Buck, Gregory A. Genome Evolution and Phylogenomic Analysis of Candidatus Kinetoplastibacterium, the Betaproteobacterial Endosymbionts of Strigomonas and Angomonas. Genome Biology and Evolution. v. 5, p. 338-350, 2013. Qualis: A1
4.	Amorim, CEG ; Bisso-Machado, R ; RAMALLO, V. ; BORTOLINI, M. C. ; BONATTO, S. L. ; SALZANO, F. M. ; HÜNEMEIER, T.. A Bayesian Approach to Genome/Linguistic Relationships in Native South Americans. Plos One. v. 8, p. e64099, 2013. Qualis: A1
5.	Aurelien Mazurie ; ALVES, J. ; OZAKI, L. S. ; ZHOU, S. ; SCHWARTZ, D. ; BUCK, G. A.. Comparative Genomics of Cryptosporidium. Comparative and Functional Genomics. v. 2013, p. 1-8, 2013. Qualis: Não identificado (COMPARATIVE AND FUNCTIONAL GENOMICS)
6.	BACCALA, L. A. ; DE BRITO, C. S. N. ; Takahashi, D. Y. ; Sameshima, K.. Unified asymptotic theory for all partial directed coherence forms. Philosophical Transactions - Royal Society. Mathematical, Physical and Engineering Sciences (Print). v. 371, p. 20120158-20120158, 2013. Qualis: Não identificado (MATHEMATICAL, PHYSICAL AND ENGINEERING SCIENCES)
7.	BATTIE-LACLAU, PATRICIA ; LACLAU, JEAN-PAUL ; PICCOLO, MARISA DE CASSIA ; ARENQUE, BRUNA CERSÓZIMO ; BERI, CONSTANCE ; MIETTON, LAURIANE ; MUNIZ, MARTA R. ALMEIDA ; JORDAN-MEILLE, LIONEL ; BUCKERIDGE, MARCOS SILVEIRA ; NOUVELLON, YANN ; RANGER, JACQUES ; BOUILLET, JEAN-PIERRE. Influence of potassium and sodium nutrition on leaf area components in Eucalyptus grandis trees. Plant and Soil (Print). v. 371, p. 19-35, 2013. Qualis: A1
8.	BECKEDORFF, FELIPE ; AMARAL, MURILO ; DEOCESANO-PEREIRA, CARLOS ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Long noncoding RNAs and their implications in cancer epigenetics. Bioscience Reports. v. 33, p. e00061, 2013. Qualis: A3
9.	Bisso-Machado, R ; RAMALLO, V. ; TARAZONA-SANTOS, E. ; SALZANO, F. M. ; BORTOLINI, M. C. ; HÜNEMEIER, T.. 5-HTTLPR genetic diversity and mode of subsistence in Native Americans. American Journal of Physical Anthropology. v. 00, p. 000-000, 2013. Qualis: A2
10.	Brentani, H; PAULA, C. S. ; BORDINI, D. ; ROLIM, D. ; SATO, F. ; PORTOLESE, J. ; PACIFICO, M. C. ; MCCRACKEN, J. T.. Autism spectrum disorders: an overview on diagnosis and treatment. Revista Brasileira de Psiquiatria (São Paulo. 1999. Impresso). v. 35, p. S62-S72, 2013. Qualis: Não identificado (IMPRESSO))
11.	BROWN, NEIL A. ; DE CASTRO, PATRÍCIA A. ; DE CASTRO PIMENTEL FIGUEIREDO, BÁRBARA ; SAVOLDI, MARCELA ; BUCKERIDGE, M. S. ; LOPES, M. L. ; LOPES, MÁRIO L. ; DE LIMA PAULLILO, SILENE C. ; BORGES, EDUARDO P. ; Amorim, Henrique V. ; GOLDMAN, MARIA H.S. ; BONATTO, DIEGO ; MALAVAZI, IRAN ; GOLDMAN, GUSTAVO H.. Transcriptional profiling of Brazilian Saccharomyces cerevisiae strains selected for semi-continuous fermentation of sugarcane must. FEMS Yeast Research. v. 13, p. 277-290, 2013. Qualis: A3
12.	Buro, C ; Oliveira, K.C. ; Lu, Z ; Leutner, S ; Beckmann, S ; Dissous, C ; Cailliau, K ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Grevelding, C. Transcriptome Analyses of Inhibitor-treated Schistosome Females Provide Evidence for Cooperating Src-kinase and TGFβ Receptor Pathways Controlling Mitosis and Eggshell Formation.. PLoS Pathogens. v. 9, p. e1003448, 2013. Qualis: A1
13.	CAMPOS, L. T. ; Brentani, H ; ROELA, R. A. ; KATAYAMA, M. L. H. ; LIMA, L. A. ; ROLIM, C. F. ; MILANI, C. ; FOLGUEIRA, M. A. A. K. ; BRENTANI, M. M.. Differences in transcriptional effects of 1α,25 dihydroxyvitamin D3 on fibroblasts associated to breast carcinomas and from paired normal breast tissues. Journal of Steroid Biochemistry and Molecular Biology. v. 133, p. 12-24, 2013. Qualis: A2
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15.	Carraro, Dirce Maria ; KOIKE FOLGUEIRA, MARIA APARECIDA AZEVEDO ; GARCIA LISBOA, BIANCA CRISTINA ; RIBEIRO OLIVIERI, ELOISA HELENA ; VITORINO KREPISCHI, ANA CRISTINA ; DE CARVALHO, ALEX FIORINI ; DE CARVALHO MOTA, LOUISE DANIELLE ; Puga, Renato David ; DO SOCORRO MACIEL, MARIA ; MICHELLI, RODRIGO AUGUSTO DEPIERI ; DE LYRA, EDUARDO CARNEIRO ; GROSSO, STANA HELENA GIORGI ; Soares, Fernando Augusto ; DE SOUZA WADDINGTON ACHATZ, MARIA ISABEL ALVES ; BRENTANI, HELENA ; Moreira-Filho, Carlos Alberto ; Brentani, Maria Mitzi. Comprehensive Analysis of BRCA1, BRCA2 and TP53 Germline Mutation and Tumor Characterization: A Portrait of Early-Onset Breast Cancer in Brazil. Plos One. v. 8, p. e57581, 2013. Qualis: A1
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68.	TEIXEIRA, F. R. ; MANFIOLLI, A. O. ; SOARES, C. S. ; BAQUI, M. M. A. ; KOIDE, T. ; Gomes, M. D.. The F-box Protein FBXO25 Promotes the Proteasome-dependent Degradation of ELK-1 Protein. Journal of Biological Chemistry (Online). v. 288, p. 28152-28162, 2013. Qualis: A1
69.	TURRA, ALEXANDER ; CRÓQUER, ALDO ; CARRANZA, ALVAR ; MANSILLA, ANDRÉS ; ARECES, ARSENIO J. ; WERLINGER, CAMILO ; MARTÍNEZ-BAYÓN, CARLOS ; NASSAR, CRISTINA APARECIDA GOMES ; PLASTINO, ESTELA ; SCHWINDT, EVANGELINA ; SCARABINO, FABRIZIO ; CHOW, FUNGYI ; FIGUEROA, FELIX LOPES ; BERCHEZ, FLÁVIO ; HALL-SPENCER, JASON M. ; SOTO, LUIS A. ; BUCKERIDGE, MARCOS SILVEIRA ; COPERTINO, MARGARETH S. ; DE SZÉCHY, MARIA TEREZA MENEZES ; GHILARDI-LOPES, NATALIA PIRANI ; et.al. Global environmental changes: setting priorities for Latin American coastal habitats. Global Change Biology (Print). v. online, p. n/a-n/a, 2013. Qualis: A1
70.	VARANI, A. M. ; MONTEIRO-VITORELLO, C. B. ; NAKAYA, H. I. ; VANSLUYS MA. The Role of Prophage in Plant Pathogenic Bacteria. Annual Review of Phytopathology (Print). v. 51, p. 429, 2013. Qualis: A1
71.	BECKEDORFF, FELIPE C. ; AYUPE, ANA C. ; CROCCI-SOUZA, RENAN ; AMARAL, MURILO S. ; Nakaya, Helder I. ; SOLTYS, DANIELA T. ; MENCK, CARLOS F. M. ; Reis, Eduardo M. ; VERJOVSKI-ALMEIDA, Sergio. The Intronic Long Noncoding RNA ANRASSF1 Recruits PRC2 to the RASSF1A Promoter, Reducing the Expression of RASSF1A and Increasing Cell Proliferation. PLOS Genetics (Online). v. 9, p. e1003705, 2013. Qualis: A1
72.	Verjovski-Almeida, S.; FACHEL, A. A. ; TAHIRA, A. C. ; VILELLA-ARIAS, S. A. ; MARACAJA-COUTINHO, V. ; GIMBA, E. R. ; VIGNAL, G. M. ; CAMPOS, F. S. ; REIS, E. M. ; Verjovski-Almeida, S.. Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations. Molecular Cancer. v. 12, p. 140, 2013. Qualis: A1
73.	Verjovski-Almeida, S.; MARTINS, L. F. ; ANTUNES, L. P. ; PASCON, R. C. ; OLIVEIRA, J. C. F. ; DIGIAMPIETRI, L. A. ; BARBOSA, D. ; PEIXOTO, B. M. ; VALLIM, M. A. ; VIANA-NIERO, C. ; OSTROSKI, E. H. ; TELLES, G. P. ; DIAS, Z. ; CRUZ, J. B. ; JULIANO, L. ; Verjovski-Almeida, S. ; DASILVA, A. M. ; SETUBAL, J. C.. Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms. Plos One. v. 8, p. e61928, 2013. Qualis: A1
74.	Verjovski-Almeida, S.; ROFATTO, HENRIQUE K. ; ARAUJO-MONTOYA, BOGAR O. ; MIYASATO, PATRÍCIA A. ; LEVANO-GARCIA, JULIO ; RODRIGUEZ, DUNIA ; NAKANO, ELIANA ; Verjovski-Almeida, Sergio ; Farias, Leonardo P. ; LEITE, LUCIANA C.C.. Immunization with tegument nucleotidases associated with a subcurative praziquantel treatment reduces worm burden following Schistosoma mansoni challenge. PeerJ. v. 1, p. e58, 2013. Qualis: A2
75.	VILELLA-ARIAS, SANTIAGO A. ; ROCHA, RAFAEL MALAGOLI ; DA COSTA, WALTER HENRIQUES ; ZEQUI, STÊNIO DE CÁSSIO ; GUIMARÃES, GUSTAVO CARDOSO ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; SOARES, FERNANDO A. ; Reis, Eduardo M.. Loss of Caspase 7 Expression Is Associated With Poor Prognosis in Renal Cell Carcinoma Clear Cell Subtype. Urology (Ridgewood, N.J.). v. 82, p. 974.e1-974.e7, 2013. Qualis: A4
76.	WULFF, NELSON ARNO ; ZHANG, SHUJIAN ; Setubal, João C ; Almeida, Nalvo F ; MARTINS, ELAINE C ; Harakava, Ricardo ; KUMAR, DIBYENDU ; RANGEL, LUIZ T ; FOISSAC, XAVIER ; BOVE, JOSEPH ; GABRIEL, DEAN W. The complete genome sequence of Candidatus Liberibacter americanus, associated with citrus Huanglongbing.. Molecular Plant-Microbe Interactions. v. 27, p. 131107142521009, 2013. Qualis: A1

(*) Relatório criado com produções desde 2000 até 2025
Data de processamento: 18/02/2025 12:52:38

1.	ALVES, WONDER A.L. ; CAMPOS, WANDER S. ; Gobber, Charles F. ; SILVA, DENNIS J. ; HASHIMOTO, RONALDO F.. Multichannel image classification based on adaptive attribute profiles. PATTERN RECOGNITION LETTERS. v. 187, p. 107-114, 2025. Qualis: A2
2.	FISCHER-CARVALHO, AGATHA ; Taveira-Barbosa, TC ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Haeberlein, S. ; AMARAL, M. S.. Antischistosomal Potential of Animal-Derived Natural Products and Compounds. Microorganisms. v. 13, p. 397, 2025. Qualis: B1
3.	GUPTA, SHANTANU ; SILVEIRA, DANER A. ; MOMBACH, JOSÉ CARLOS M. ; HASHIMOTO, RONALDO F.. DNA Damage-Induced Ferroptosis: A Boolean Model Regulating p53 and Non-Coding RNAs in Drug Resistance. PROTEOMES. v. 13, p. 6, 2025. Qualis: B3
4.	SILVA, DENNIS J. ; KOSINKA, JI'Í ; HASHIMOTO, RONALDO F. ; ROERDINK, JOS B.T.M. ; MORIMITSU, ALEXANDRE ; ALVES, WONDER A.L.. Incremental component tree contour computation. PATTERN RECOGNITION LETTERS. v. 187, p. 115-121, 2025. Qualis: A2
5.	VISNARDI, ALINE BIAZOLA ; RIBEIRO, RODOLFO ALVARENGA ; DE SOUZA, ANACLETO SILVA ; CHURASACARI VINCES, TANIA GERALDINE ; LLONTOP, EDGAR E. ; DE ALMEIDA FERRARI, ANIELLE SALVIANO ; FRANÇA HENRIQUE, PEDRO ANTÔNIO ; VALDIVIESO, DANIELA ; SÁNCHEZ-LIMACHE, DANIEL ENRIQUE ; SILVA, GABRIELA ROBERTO ; SOARES, EDUARDO PEREIRA ; SANTOS, THOMAS WITTMANN CEZAR ; FARAH, CHUCK SHAKER ; SASSONIA, ROGERIO CORTE ; SALINAS, ROBERTO K. ; GUZZO, CRISTIANE RODRIGUES ; de SOUZA, Robson Francisco. Insertion of a Divergent GAF-like Domain Defines a Novel Family of YcgR Homologues That Bind c-di-GMP in Leptospirales. ACS Omega. v. 10, p. 3988-4006, 2025. Qualis: A3
6.	ZAMUNÉR, CAIO FELIPE CAVICCHIA ; Carhuaricra-Huaman, Dennis ; RAGUPATHY, ROOBINIDEVI ; REDFERN, JAMES ; RODRIGUEZ-CUEVA, CARMEN L. ; Behlau, Franklin ; ENRIGHT, MARK C. ; FERREIRA, HENRIQUE ; Setubal, João C.. Evolution and spread of Xanthomonas citri subsp. citri in the São Paulo, Brazil, citrus belt inferred from 758 novel genomes. Microbial Genomics. v. 11, p. 1338, 2025. Qualis: B2

1.	ALMEIDA, CESAR C. ; BRENTANI, HELENA P. ; FORLENZA, ORESTES V. ; DINIZ, BRENO S.. Redução dos níveis séricos de ácido fólico em pacientes com a doença de Alzheimer. Revista de Psiquiatria Clínica (São Paulo. Impresso). v. 39, p. 90-93, 2012. Qualis: Não identificado (IMPRESSO))
2.	Almeida, Giulliana Tessarin ; Amaral, Murilo Sena ; Beckedorff, Felipe Cesar Ferrarezi ; Kitajima, João Paulo ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq. Experimental Parasitology. v. 132, p. 22-31, 2012. Qualis: A4
3.	AMARAL, LOURDES ISABEL VELHO DO ; SANTOS, HENRIQUE P. ; ROSSATTO, DAVI RODRIGO ; BUCKERIDGE, MARCOS SILVEIRA. Diurnal changes in storage carbohydrate metabolism in cotyledons of the tropical tree Hymenaea courbaril L. (Leguminosae). Brazilian Journal of Botany. v. 35, p. 347-355, 2012. Qualis: B1
4.	Anderson, Letícia ; Pierce, Raymond J. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Schistosoma mansoni histones: From transcription to chromatin regulation; an in silico analysis. Molecular and Biochemical Parasitology (Print). v. 183, p. 105-114, 2012. Qualis: A4
5.	Aravind, L. ; Anantharaman, Vivek ; ZHANG, DAPENG ; De Souza, Robson F. ; Iyer, Lakshminarayan M.. Gene flow and biological conflict systems in the origin and evolution of eukaryotes. Frontiers in Cellular and Infection Microbiology. v. 2, p. 2235-2988, 2012. Qualis: A1
6.	Bragatto, Juliano ; Segato, Fernando ; Cota, Junio ; Mello, Danilo B. ; Oliveira, Marcelo M. ; Buckeridge, Marcos S. ; Squina, Fabio M. ; Driemeier, Carlos ; BUCKERIDGE, M. S.. Insights on How the Activity of an Endoglucanase Is Affected by Physical Properties of Insoluble Celluloses. Journal of Physical Chemistry. B. v. 116, p. 6128-6136, 2012. Qualis: Não identificado (B)
7.	BRAGHETTO, K. R. ; FERREIRA, J. E. ; VINCENT, J.. Performance evaluation of resource-aware business processes using stochastic automata networks. INTERNATIONAL JOURNAL OF INNOVATIVE COMPUTING, INFORMATION & CONTROL. v. v.8, p. 5295-5316, 2012.Qualis: A4
8.	BUCKERIDGE, MARCOS S.; Braga, Marcia R.. Sonia Dietrich: a life dedicated to science. Brazilian Journal of Botany. v. 35, p. 00-00, 2012. Qualis: B1
9.	Buckeridge, Marcos S.; Souza, Amanda P. ; Arundale, Rebecca A. ; Anderson-Teixeira, Kristina J. ; DeLucia, Evan. Ethanol from sugarcane in Brazil: a `midway¿ strategy for increasing ethanol production while maximizing environmental benefits. GCB BIOENERGY. v. 4, p. 119-126, 2012. Qualis: Não identificado (GCB BIOENERGY)
10.	Campbell, Desmond D. ; Parra, Maria V. ; Duque, Constanza ; Gallego, Natalia ; Franco, Liliana ; Tandon, Arti ; Hünemeier, Tábita ; Bortolini, Cátira ; Villegas, Alberto ; Bedoya, Gabriel ; McCarthy, Mark I. ; Price, Alkes ; Reich, David ; Ruiz-Linares, Andrés. Amerind Ancestry, Socioeconomic Status and the Genetics of Type 2 Diabetes in a Colombian Population. Plos One. v. 7, p. e33570, 2012. Qualis: A1
11.	Campos, Antonio Hugo Jose Froes Marques ; Brentani, Helena ; Olivieri, Eloisa Ribeiro ; Carraro, Dirce Maria ; Patrão, Diogo ; Mota, Louise Danielle De Carvalho ; Brentani, Ricardo Renzo ; Soares, Fernando Augusto ; Camargo, Luiz Paulo ; Prescinoti, Vera Cristina ; Silva, Andre Abreu. The Value of a Tumor Bank in the Development of Cancer Research in Brazil: 13 Years of Experience at the A C Camargo Hospital. Biopreservation and Biobanking. v. 10, p. 168-173, 2012. Qualis: A4
12.	Cappi, Carolina ; Muniz, Renan Kawano ; Sampaio, Aline Santos ; Cordeiro, Quirino ; BRENTANI, H. ; Palácios, Selma A. ; Marques, Andrea H. ; Vallada, Homero ; Miguel, Eurípedes Constantino ; Guilherme, Luiza ; Hounie, Ana Gabriela. Association study between functional polymorphisms in the TNF-alpha gene and obsessive-compulsive disorder. Arquivos de Neuro-Psiquiatria (Impresso). v. 70, p. 87-90, 2012. Qualis: B2
13.	Cerqueira, Caio C S ; Paixão-Côrtes, Vanessa R ; Zambra, Francis M B ; Salzano, Francisco M ; Hünemeier, Tábita ; Bortolini, Maria-Cátira. Predicting homo pigmentation phenotype through genomic data: From neanderthal to James Watson. American Journal of Human Biology,. p. n/a-n/a, 2012. Qualis: A1 (AMERICAN JOURNAL OF HUMAN BIOLOGY)

Programa de Pós Graduação em Bioinformática

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