Artigos completos publicados em periódicos

Legenda Qualis:

• Publicação para a qual o nome exato do Qualis foi identificado: Qualis <estrato>
• Publicação para a qual um nome similar (não exato) do Qualis foi identificado: Qualis <estrato> (nome similar)
• Publicação para a qual nenhum nome do Qualis foi identificado: Qualis não identificado (nome usado na busca)

2016

66.	SATO, J. R. ; BALARDIN, J. ; VIDAL, M. C. ; FUJITA, A. Identification of segregated regions in the functional brain connectome of autistic patients by a combination of fuzzy spectral clustering and entropy analysis. Journal of Psychiatry & Neuroscience. v. 41, p. 124-132, 2016. Qualis: A1 (JOURNAL OF PSYCHIATRY AND NEUROSCIENCE)
67.	SCHAKER, PATRICIA D. C. ; PALHARES, A. C. ; TANIGUTI, LUCAS M. ; PETERS, LEILA P. ; CRESTE, SILVANA ; AITKEN, KAREN S. ; SLUYS MAV. ; KITAJIMA, JOÃO P. ; VIEIRA, MARIA L. C. ; MONTEIRO-VITORELLO, CLAUDIA B.. RNAseq Transcriptional Profiling following Whip Development in Sugarcane Smut Disease. Plos One. v. 11, p. e0162237, 2016. Qualis: A1
68.	SCHONS-FONSECA, LUCIANE ; DA SILVA, JOSEFA B. ; MILANEZ, JULIANA S. ; DOMINGOS, RENAN H. ; SMITH, JANET L. ; Nakaya, Helder I. ; GROSSMAN, ALAN D. ; HO, PAULO L. ; DA COSTA, RENATA MA. Analysis of LexA binding sites and transcriptomics in response to genotoxic stress in. Nucleic Acids Research. v. 1, p. gkv1536, 2016. Qualis: A1
69.	SCHRODER, WAYNE A. ; ANRAKU, ITARU ; LE, THUY T. ; HIRATA, THIAGO D.C. ; Nakaya, Helder I. ; Major, Lee ; ELLIS, JONATHAN J. ; Suhrbier, Andreas. SerpinB2 Deficiency Results in a Stratum Corneum Defect and Increased Sensitivity to Topically Applied Inflammatory Agents. The American Journal of Pathology (Print). v. 1, p. 1, 2016. Qualis: A1
70.	Setubal, Joao C. Desconcertos na Ciência. Revista Brasileira de Psicanálise (Impresso). v. 50, p. 145-152, 2016.Qualis: B1
71.	SOCHACKI, JAROSLAW ; DEVALLE, SYLVIE ; REIS, MARCELO ; DE MORAES MACIEL, RENATA ; DA SILVEIRA PAULSEN, BRUNA ; BRENTANI, HELENA ; BELMONTE-DE-ABREU, PAULO SILVA ; REHEN, STEVENS. Generation of iPS cell lines from schizophrenia patients using a non-integrative method. Stem Cell Research. v. 17, p. 97-101, 2016. Qualis: A2
72.	TEIXEIRA, F. R. ; RANDLE, S. J. ; PATEL, S. P. ; MEVISSEN, T. E. T. ; ZENKEVICIUTE, G. ; KOIDE, T. ; KOMANDER, D. ; LAMAN, H.. Gsk3 and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease. Biochemical Journal. v. 473, p. 3563-3580, 2016. Qualis: A2
73.	THOMAS, ANDREW M. ; JESUS, ELIANE C. ; LOPES, ADEMAR ; AGUIAR, SAMUEL ; BEGNAMI, MARIA D. ; ROCHA, RAFAEL M. ; CARPINETTI, PAOLA AVELAR ; CAMARGO, ANAMARIA A. ; HOFFMANN, CHRISTIAN ; FREITAS, HELANO C. ; SILVA, ISRAEL T. ; Nunes, Diana N. ; Setubal, João C. ; DIAS-NETO, Emmanuel. Tissue-Associated Bacterial Alterations in Rectal Carcinoma Patients Revealed by 16S rRNA Community Profiling. Frontiers in Cellular and Infection Microbiology. v. 6, p. 00179, 2016. Qualis: A1
74.	VANINA ELIAS, ELIANA ; PEREIRA DE CASTRO, NADIA ; HENRIQUE BALDAN PINEDA, PAULO ; SENS ABUÁZAR, CAROLINA ; APARECIDA BUENO DE TOLEDO OSORIO, CYNTHIA ; GIGLIOLA PINILLA, MABEL ; DANIELA DA SILVA, SABRINA ; ARANHA CAMARGO, ANAMARIA ; ARAUJO SILVA JR, WILSON ; NAPOLITANO E FERREIRA, ELISA ; PAULA BRENTANI, HELENA ; MARIA CARRARO, DIRCE. Epithelial cells captured from ductal carcinoma in situ reveal a gene expression signature associated with progression to invasive breast cancer. OncoTarget. v. 7, p. 75672-75684, 2016. Qualis: A2
75.	VIEIRA GERALDO, MURILO ; IMOTO NAKAYA, HELDER ; TERUKO KIMURA, EDNA. Down-regulation of 14q32-encoded miRNAs and tumor suppressor role for miR-654-3p in papillary thyroid cancer. OncoTarget. v. 1, p. 1-10, 2016. Qualis: A2
76.	VIEIRA, T. S. W. J. ; Vieira, Rafael F.C. ; KRAWCZAK, F. S. ; SOARES, H. S. ; GUIMARÃES, A. M. S. ; BARROS-FILHO, I. R. ; MARCONDES, M. ; LABRUNA, M. B. ; BIONDO, A. W.. Ehrlichia sp. infection in carthorses of low-income owners, Southern Brazil. Comparative Immunology, Microbiology and Infectious Diseases. v. 48, p. 1-5, 2016.Qualis: A1 (COMPARATIVE IMMUNOLOGY, MICROBIOLOGY AND INFECTIOUS DISEASES)
77.	VILLELA, DARINE ; RAMALHO, RODRIGO F. ; SILVA, ADERBAL R. T. ; BRENTANI, HELENA ; SUEMOTO, CLAUDIA K. ; PASQUALUCCI, CARLOS AUGUSTO ; GRINBERG, LEA T. ; KREPISCHI, ANA C. V. ; Rosenberg, Carla. Differential DNA Methylation of MicroRNA Genes in Temporal Cortex from Alzheimer?s Disease Individuals. Neural Plasticity (Online). v. 2016, p. 1-10, 2016. Qualis: A2
78.	VITCOSQUE, GABRIELA LEAL ; RIBEIRO, LILIANE FRAGA COSTA ; DE LUCAS, ROSYMAR COUTINHO ; DA SILVA, TONY MARCIO ; RIBEIRO, LUCAS FERREIRA ; DE LIMA DAMASIO, ANDRÉ RICARDO ; FARINAS, CRISTIANE SANCHEZ ; GONÇALVES, ALINE ZORZETTO LOPES ; SEGATO, FERNANDO ; BUCKERIDGE, MARCOS SILVEIRA ; JORGE, JOÃO ATILIO ; Polizeli, Maria de Lourdes T. M.. The functional properties of a xyloglucanase (GH12) of Aspergillus terreus expressed in Aspergillus nidulans may increase performance of biomass degradation. Applied Microbiology and Biotechnology. v. 100, p. 9133-9144, 2016. Qualis: A2
79.	YUNUSOV, D. ; ANDERSON, L. ; SILVA, L. F. ; WYSOCKA, J. ; EZASHI, T. ; ROBERTS, R. M. ; Verjovski-Almeida, S.. HIPSTR and thousands of lncRNAs are heterogeneously expressed in human embryos, primordial germ cells and stable cell lines. Scientific Reports. v. 6, p. 32753, 2016. Qualis: A2

2015

1.	ADHIKARI, K. ; Reales, G. ; SMITH, A. ; KONCA, E. ; PALMEN, J. ; QUINTO-SANCHEZ, M. ; ACUNA-ALONZO, V. ; JARAMILLO, C. ; ARIAS, W. ; FUENTES, M. ; PIZARRO, M. ; MACIN, G. ; BARQUERA, R. ; GOMEZ-VALDES, J. ; VILLAMIL-RAMIREZ, H. ; HÜNEMEIER, T. ; RAMALLO, V. ; CERQUEIRA, C. C. S. ; GRANJA, V. ; HURTADO, M. ; et.al. A genome-wide association study identifies multiple loci for variation in human ear morphology. Nature Communications. v. 6, p. 7500, 2015. Qualis: A1
2.	AKONDY, RAMA S. ; JOHNSON, PHILIP L. F. ; Nakaya, Helder I. ; EDUPUGANTI, SRILATHA ; MULLIGAN, MARK J. ; LAWSON, BENTON ; MILLER, JOSEPH D. ; Pulendran, Bali ; ANTIA, RUSTOM ; Ahmed, Rafi. Initial viral load determines the magnitude of the human CD8 T cell response to yellow fever vaccination. Proceedings of the National Academy of Sciences of the United States of America. v. 112, p. 3050-3055, 2015. Qualis: A1
3.	ALEXANDRINO, P. ; MENDONCA, T. ; BAUTISTA, L. ; CHERIX, J. ; LOZANO-SAKALAUSKAS, G. ; FUJITA, A. ; RAMOS FILHO, E. ; LONG, P. ; PADILLA, G. ; TACIRO, M. ; GOMEZ, J. G. ; SILVA, L.. Draft Genome Sequence of the Polyhydroxyalkanoate-producing Bacterium Burkholderia sacchari LMG 19450 Isolated from Brazilian Sugarcane Plantation Soil. Genome Announcements. v. 3, p. e00313-15, 2015. Qualis: B3
4.	ALMEIDA, JULIANA ; AZEVEDO, MARIANA DA SILVA ; SPICHER, LIVIA ; GLAUSER, GAÉTAN ; VOM DORP, KATHARINA ; GUYER, LUZIA ; DEL VALLE CARRANZA, ANDREA ; ASIS, RAMÓN ; De Souza, Amanda Pereira ; BUCKERIDGE, MARCOS ; DEMARCO, DIEGO ; BRES, CÉCILE ; ROTHAN, CHRISTOPHE ; PERES, LÁZARO EUSTÁQUIO PEREIRA ; HÖRTENSTEINER, STEFAN ; KESSLER, FÉLIX ; DÖRMANN, PETER ; CARRARI, FERNANDO ; ROSSI, MAGDALENA. Down-regulation of tomato PHYTOL KINASE strongly impairs tocopherol biosynthesis and affects prenyllipid metabolism in an organ-specific manner. Journal of Experimental Botany. v. 67, p. erv504, 2015. Qualis: A1
5.	Amorim, CEG ; ACUNA-ALONZO, V. ; SALZANO, F. M. ; BORTOLINI, M. C. ; HÜNEMEIER, T.. Differing Evolutionary Histories of the ACTN3*R577X Polymorphism among the Major Human Geographic Groups. Plos One. v. 10, p. e0115449, 2015. Qualis: A1
6.	Anderson, Letícia ; AMARAL, MURILO S. ; BECKEDORFF, FELIPE ; SILVA, LUCAS F. ; Dazzani, Bianca ; Oliveira, Katia C. ; Almeida, Giulliana T. ; GOMES, MONETE R. ; PIRES, DAVID S. ; SETUBAL, JOÃO C. ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio. Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA-Seq. PLoS Neglected Tropical Diseases (Online). v. 9, p. e0004334, 2015. Qualis: A1
7.	ANDRADE-LIMA, L. C. ; ANDRADE, L. N. ; Menck, C. F. M.. ATR suppresses apoptosis after UVB irradiation by controlling both translesion synthesis and alternative tolerance pathways. Journal of Cell Science. v. 128, p. 150-159, 2015. Qualis: A1
8.	ANDRADE-LIMA, L. C. ; VELOSO, A. ; PAULSEN, M. T. ; Menck, C. F. M. ; LJUNGMAN, M.. DNA repair and recovery of RNA synthesis following exposure to ultraviolet light are delayed in long genes. Nucleic Acids Research. v. 43, p. 2744-2756, 2015. Qualis: A1
9.	AYUPE, ANA C ; Tahira, Ana C ; CAMARGO, Lauren ; BECKEDORFF, FELIPE C ; VERJOVSKI-ALMEIDA, Sergio ; Reis, Eduardo M ; REIS, EM. Global analysis of biogenesis, stability and sub-cellular localization of lncRNAs mapping to intragenic regions of the human genome. RNA Biology. v. 12, p. 877-892, 2015. Qualis: A2
10.	AZEVEDO, S. ; BORTOLINI, M. C. ; BONATTO, S. L. ; HÜNEMEIER, T. ; SANTOS, F. ; GONZALEZ-JOSE, R.. Ancient remains and the first peopling of the Americas: Reassessing the Hoyo Negro skull. American Journal of Physical Anthropology,. p. n/a-n/a, 2015. Qualis: A2 (AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY)
11.	BARAU, J. ; GRANDIS, A. ; CARVALHO, V. M. D. A. ; TEIXEIRA, G. S. ; ZAPAROLI, G. H. A. ; DO RIO, M. C. S. ; RINCONES, J. ; BUCKERIDGE, M. S. ; PEREIRA, G. A. G.. Apoplastic and intracellular plant sugars regulate developmental transitions in witches' broom disease of cacao. Journal of Experimental Botany. v. 66, p. 1325-1337, 2015. Qualis: A1
12.	Bisso-Machado, R ; RAMALLO, V. ; PAIXAO-CORTES, V. R. ; DEMARCHI, D. A. ; SANDOVAL, J. R. S. ; GRANARA, A. A. S. ; SALZANO, F. M. ; HÜNEMEIER, T. ; BORTOLINI, M. C.. NAT2 gene diversity and its evolutionary trajectory in the Americas. Pharmacogenomics Journal (Print),. p. 000-000, 2015. Qualis: A2 (PHARMACOGENOMICS JOURNAL)
13.	BOQUETT, J. ; SCHULER-FACCINI, L. ; JOBIM, L. F. ; JOBIM, M. ; FAGUNDES, N. J. R. ; HÜNEMEIER, T.. Self-assessment of Colour Categories and its Relationship with HLA profiling in Brazilian Bone Marrow Donors. Biology of Blood and Marrow Transplantation,. p. n/a-n/a, 2015. Qualis: A1 (BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION)
14.	BORIN, GUSTAVO PAGOTTO ; SANCHEZ, CAMILA CRISTINA ; De Souza, Amanda Pereira ; DE SANTANA, ELIANE SILVA ; DE SOUZA, ALINE TIEPPO ; LEME, ADRIANA FRANCO PAES ; SQUINA, FABIO MARCIO ; BUCKERIDGE, MARCOS ; Goldman, Gustavo Henrique ; OLIVEIRA, JULIANA VELASCO DE CASTRO. Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass. Plos One. v. 10, p. e0129275, 2015. Qualis: A1
15.	BRITO, ANDERSON FERNANDES DE ; BRACONI, CARLA TORRES ; WEIDMANN, MANFRED ; DILCHER, MEIK ; ALVES, JOÃO MARCELO PEREIRA ; GRUBER, ARTHUR ; ZANOTTO, PAOLO MARINHO DE ANDRADE. The pangenome of the Anticarsia gemmatalis multiple nucleopolyhedrovirus (AgMNPV). Genome Biology and Evolution. v. 12, p. evv231, 2015. Qualis: A1
16.	BUCKERIDGE, MARCOS. Árvores urbanas em São Paulo: planejamento, economia e água. Estudos Avançados (Online). v. 29, p. 85-101, 2015. Qualis: A1
17.	CABALLERO, ZULEIMA C ; COSTA-MARTINS, ANDRE G ; FERREIRA, ROBSON C ; PEREIRA ALVES, JOÃO MARCELO ; SERRANO, MYRNA G ; CAMARGO, ERNEY P ; Buck, Gregory A ; MINOPRIO, PAOLA ; GERALDES TEIXEIRA, MARTA M. Phylogenetic and syntenic data support a single horizontal transference to a Trypanosoma ancestor of a prokaryotic proline racemase implicated in parasite evasion from host defences. Parasites & Vectors. v. 8, p. 222, 2015. Qualis: A1
18.	CARLTON, J. M. ; VOLKMAN, S. K. ; UPLEKAR, S. ; HUPALO, D. N. ; PEREIRA ALVES, J. M. ; CUI, L. ; DONNELLY, M. ; ROOS, D. S. ; HARB, O. S. ; ACOSTA, M. ; READ, A. ; RIBOLLA, P. E. M. ; SINGH, O. P. ; VALECHA, N. ; WASSMER, S. C. ; FERREIRA, M. ; ESCALANTE, A. A.. Population Genetics, Evolutionary Genomics, and Genome-Wide Studies of Malaria: A View Across the International Centers of Excellence for Malaria Research. The American Journal of Tropical Medicine and Hygiene. v. 93, p. 87-98, 2015. Qualis: A3 (AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGINE)
19.	CERQUEIRA, O. L. D. ; TRUESDELL, P. ; BALDASSARRE, T. ; VILELLA-ARIAS, SANTIAGO A ; WATT, K. ; MEENS, J. ; CHANDER, H. ; OSORIO, C. A. ; SOARES, F. A. ; REIS, EM ; CRAIG, A. W.. CIP4 promotes metastasis in triple-negative breast cancer and is associated with poor patient prognosis. OncoTarget. v. 6, p. 9397-9408, 2015. Qualis: A2
20.	DA SILVA PELLEGRINA, DIOGO VIEIRA ; SEVERINO, PATRICIA ; MACHADO, MARCEL CERQUEIRA ; DA SILVA, FABIANO PINHEIRO ; REIS, EDUARDO MORAES. Microarray gene expression analysis of neutrophils from elderly septic patients. Genomics Data. v. 6, p. 51-53, 2015. Qualis: B1
21.	DE ABREU MEIRELES, DIOGO ; MATEUS DOMINGOS, RENATO ; WEISSMANN GAIARSA, JONAS ; de SOUZA, Robson Francisco ; SOARES NETTO, LUIS EDUARDO. Functional and Biochemical Characterization of the First Ohr Peroxidase Identified in Eukaryotes. FREE RADICAL BIOLOGY AND MEDICINE. v. 87, p. S150, 2015. Qualis: A1 (FREE RADICAL BIOLOGY & MEDICINE)
22.	DE ANDRADE, MARIZA ; RAY, DEBASHREE ; PEREIRA, ALEXANDRE C. ; SOLER, J'LIA P.. Global Individual Ancestry Using Principal Components for Family Data. Human Heredity. v. 80, p. 1-11, 2015. Qualis: Não identificado (HUMAN HEREDITY)
23.	DE AZEVEDO-MARTINS, ALLAN C ; Alves, João MP ; GARCIA DE MELLO, FERNANDO ; VASCONCELOS, ANA TEREZA R ; DE SOUZA, WANDERLEY ; EINICKER-LAMAS, MARCELO ; MOTTA, MARIA CRISTINA M. Biochemical and phylogenetic analyses of phosphatidylinositol production in Angomonas deanei, an endosymbiont-harboring trypanosomatid. Parasites & Vectors. v. 8, p. 247, 2015. Qualis: A1
24.	DE BAUMONT, ANGELICA ; Maschietto, Mariana ; Lima, Leandro ; Carraro, Dirce Maria ; OLIVIERI, ELOISA HELENA ; FIORINI, ALEX ; BARRETA, LUIZ ANDRÉ NARDIN ; PALHA, JOANA ALMEIDA ; Belmonte-de-Abreu, Paulo ; MOREIRA FILHO, CARLOS ALBERTO ; BRENTANI, HELENA. Innate immune response is differentially dysregulated between bipolar disease and schizophrenia. Schizophrenia Research (Print). v. 161, p. 215-221, 2015. Qualis: A1
25.	DE SOUZA, A. P. ; KAMEI, C. L. A. ; TORRES, A. F. ; PATTATHIL, S. ; HAHN, M. G. ; TRINDADE, L. M. ; BUCKERIDGE, M. S.. How cell wall complexity influences saccharification efficiency in Miscanthus sinensis. Journal of Experimental Botany (Online). v. 66, p. 4351-4365, 2015. Qualis: A1
26.	De Souza, Amanda Pereira ; COCURON, JEAN-CHRISTOPHE ; GARCIA, ANA CAROLINA ; ALONSO, ANA PAULA ; Buckeridge, Marcos S.. CHANGES IN WHOLE-PLANT METABOLISM DURING GRAIN-FILLING STAGE IN SORGHUM BICOLOR L. (MOENCH) GROWN UNDER ELEVATED CO2 AND DROUGHT. PLANT PHYSIOLOGY. v. 169, p. pp.01054.2015-1765, 2015. Qualis: A1
27.	DIAZ, RICARDO SOBHIE ; INOCÊNCIO, LILIAN A. ; SUCUPIRA, Maria Cecilia Araripe ; PEREIRA, ANDERSON ALVARENGA ; HUNTER, JAMES ; FERREIRA, J. E. ; ARAÚJO, LUCIANO V. ; SOUZA, DENISE F. C. ; SABINO, Ester Cerdeira. The Virological and Immunological Characteristics of the HIV-1-Infected Population in Brazil: From Initial Diagnosis to Impact of Antiretroviral Use. Plos One. v. 10, p. e0139677, 2015. Qualis: A1
28.	Duarte, N.E. ; Giolo, S.R. ; de Andrade, M. ; SOLER, J. M. P.. On the Equivalence of Methods for Population Stratification and their Application in Genetic Association Studies. Revista Brasileira de Biometria. v. 33, p. 494-507, 2015.Qualis: C
29.	Ferreira, Elisa Napolitano ; DE CAMPOS MOLINA, GUSTAVO ; Puga, Renato David ; NAGAI, MARIA APARECIDA ; CAMPOS, ANTÔNIO HUGO JOSÉ FROES MARQUES ; GUIMARÃES, GUSTAVO CARDOSO ; Nunes, Diana Noronha ; Pasqualini, Renata ; ARAPD, WADIH ; BRENTANI, HELENA ; Dias-Neto, Emmanuel ; BRENTANI, RICARDO R. ; Carraro, Dirce Maria. Linear mRNA amplification approach for RNAseq from limited amount of RNA. Gene (Amsterdam). v. 564, p. 220-227, 2015. Qualis: A4
30.	FONTANETTI RODRIGUES, MARIA GABRIELA ; SOARES, MURILO RACY ; RAMOS, ESTER SILVEIRA ; Giuliatti, Silvana. Analysis of Global DNA Methylation in Irradiated Fig Selections. American Journal of Plant Sciences. v. 06, p. 2257-2262, 2015. Qualis: C
31.	GABRIEL, HELOISA B. ; DE AZEVEDO, MAURO F. ; PALMISANO, GIUSEPPE ; WUNDERLICH, GERHARD ; KIMURA, EMÍLIA A. ; KATZIN, ALEJANDRO M. ; Alves, João M. P.. Single-target high-throughput transcription analyses reveal high levels of alternative splicing present in the FPPS/GGPPS from Plasmodium falciparum. Scientific Reports. v. 5, p. 18429, 2015. Qualis: A2
32.	GHILARDI-LOPES, NATALIA PIRANI ; TURRA, ALEXANDER ; Buckeridge, Marcos S. ; SILVA, AMANDA CRISTINA ; BERCHEZ, FLÁVIO AUGUSTO DE SOUZA ; DE OLIVEIRA, VALÉRIA MARQUES. On the perceptions and conceptions of tourists with regard to global environmental changes and their consequences for coastal and marine environments: A case study of the northern São Paulo State coast, Brazil. Marine Policy. v. 57, p. 85-92, 2015. Qualis: A1
33.	ALMEIDA, GIULLIANA T. ; LAGE, REGINA C. G. ; ANDERSON, LETICIA ; VENANCIO, THIAGO M. ; Nakaya, Helder I. ; MIYASATO, PATRÍCIA A. ; ROFATTO, HENRIQUE K. ; ZERLOTINI, ADHEMAR ; NAKANO, ELIANA ; OLIVEIRA, GUILHERME ; Verjovski-Almeida, Sergio. Synergy of Omeprazole and Praziquantel In Vitro Treatment against Schistosoma mansoni Adult Worms. PLoS Neglected Tropical Diseases (Online). v. 9, p. e0004086, 2015. Qualis: A1
34.	GOMES, L R ; VESSONI, A T ; MENCK, C F M. Three-dimensional microenvironment confers enhanced sensitivity to doxorubicin by reducing p53-dependent induction of autophagy. Oncogene (Basingstoke). v. xxx, p. xxx, 2015. Qualis: A1
35.	GOMES, LUCIANA R. ; Fujita, André ; MOTT, JONI D. ; SOARES, FERNANDO A. ; LABRIOLA, LETICIA ; SOGAYAR, MARI C.. RECK is not an independent prognostic marker for breast cancer. BMC Cancer (Online). v. 15, p. 1, 2015. Qualis: A2
36.	GOMES-FILHO, J. V. ; ZARAMELA, L. S. ; Italiani, VCS ; BALIGA, NITIN S. ; Vencio, R.Z.N. ; KOIDE, T.. Sense overlapping transcripts in IS 1341 -type transposase genes are functional non-coding RNAs in archaea. RNA Biology. v. 12, p. 490-500, 2015. Qualis: A2
37.	Guimaraes, Ana Marcia Sa; ZIMPEL, CRISTINA KRAEMER ; IKUTA, CÁSSIA YUMI ; DO NASCIMENTO, NAÍLA CANNES ; DOS SANTOS, ANDREA PIRES ; Messick, Joanne Belle ; HEINEMANN, MARCOS BRYAN ; FERREIRA NETO, JOSÉ SOARES ; BRANDÃO, PAULO EDUARDO. Draft Genome Sequence of Mycobacterium bovis Strain SP38, a Pathogenic Bacterium Isolated from a Bovine in Brazil. Genome Announcements. v. 3, p. e00511-15, 2015. Qualis: B3
38.	GUIMARÃES, LILIAN O. ; WUNDERLICH, GERHARD ; Alves, João M. P. ; BUENO, MARINA G. ; RÖHE, FABIO ; CATÃO-DIAS, JOSÉ L. ; NEVES, AMANDA ; MALAFRONTE, ROSELY S. ; CURADO, IZILDA ; DOMINGUES, WILSON ; KIRCHGATTER, KARIN. Merozoite surface protein-1 genetic diversity in Plasmodium malariae and Plasmodium brasilianum from Brazil. BMC Infectious Diseases (Online). v. 15, p. 529, 2015. Qualis: A3
39.	HAGAN, THOMAS ; Nakaya, Helder I. ; SUBRAMANIAM, SHANKAR ; Pulendran, Bali. Systems vaccinology: Enabling rational vaccine design with systems biological approaches. Vaccine (Guildford). v. 1, p. 1, 2015. Qualis: A2
40.	HÜNEMEIER, T.; Bisso-Machado, R ; SALZANO, F. M. ; BORTOLINI, M. C.. Native American ancestry leads to complexity in 5-HTTLPR polymorphism association studies. Molecular Psychiatry,. p. 000-000, 2015. Qualis: A1 (MOLECULAR PSYCHIATRY)
41.	KLEINMAN, A. ; CAETANO, S. C. ; BRENTANI, H. ; ROCCA, C. C. D. A. ; DOS SANTOS, B. ; ANDRADE, E. R. ; ZENI, C. P. ; TRAMONTINA, S. ; ROHDE, L. A. P. ; Lafer, B.. Attention-based classification pattern, a research domain criteria framework, in youths with bipolar disorder and attention-deficit/hyperactivity disorder. Australian and New Zealand Journal of Psychiatry (Print). v. 49, p. 255-265, 2015. Qualis: A1
42.	MARQUES, LUCAS M. ; GUIMARÃES, ANA M. S. ; MARTINS, HELLEN B. ; REZENDE, IZADORA S. ; BARBOSA, MAYSA S. ; CAMPOS, GUILHERME B. ; DO NASCIMENTO, NAÍLA C. ; DOS SANTOS, ANDREA P. ; AMORIM, ALINE T. ; SANTOS, VERENA M. ; Messick, Joanne B. ; Timenetsky, Jorge. Genome Sequence of Ureaplasma diversum Strain ATCC 49782. Genome Announcements. v. 3, p. e00314-15, 2015. Qualis: B3
43.	Maschietto, Mariana ; TAHIRA, ANA C ; Puga, Renato ; Lima, Leandro ; MARIANI, DANIEL ; DA SILVEIRA PAULSEN, BRUNA ; Belmonte-de-Abreu, Paulo ; VIEIRA, HENRIQUE ; KREPISCHI, ANA CV ; Carraro, Dirce M ; Palha, Joana A ; REHEN, STEVENS ; BRENTANI, HELENA. Co-expression network of neural-differentiation genes shows specific pattern in schizophrenia. BMC Medical Genomics. v. 8, p. 1-15, 2015. Qualis: A3
44.	MELO, UIRÁ S. ; MACEDO-SOUZA, LUCIA I. ; FIGUEIREDO, THALITA ; MUOTRI, ALYSSON R. ; GLEESON, JOSEPH G. ; COUX, GABRIELA ; ARMAS, PABLO ; CALCATERRA, NORA B. ; KITAJIMA, JOÃO P. ; AMORIM, SIMONE ; OLÁVIO, THIAGO R. ; GRIESI-OLIVEIRA, KARINA ; COATTI, GIULIANA C. ; ROCHA, CLARISSA R.R. ; Martins-Pinheiro M ; MENCK CF ; ZAKI, MAHA S. ; KOK, FERNANDO ; ZATZ, MAYANA ; SANTOS, SILVANA ; et.al. Overexpression of KLC2 due to a homozygous deletion in the non-coding region causes SPOAN syndrome. Human Molecular Genetics (Print). v. 18, p. ddv388, 2015. Qualis: A1
45.	MENDES DE REZENDE, FERNANDA ; PEREIRA DE SOUZA, AMANDA ; SILVEIRA BUCKERIDGE, MARCOS ; MARIA FURLAN, CLÁUDIA. Is guava phenolic metabolism influenced by elevated atmospheric CO2?. Environmental Pollution (1987). v. 196, p. 483-488, 2015. Qualis: B4
46.	METCALFE, CUSHLA J. ; OLIVEIRA, SARAH G. ; GAIARSA, JONAS W. ; AITKEN, KAREN S. ; CARNEIRO, MONALISA S. ; ZATTI, FERNANDA ; Van Sluys, Marie-Anne. Using quantitative PCR with retrotransposon-based insertion polymorphisms as markers in sugarcane. Journal of Experimental Botany. v. 66, p. 4239-4250, 2015. Qualis: A1
47.	MORAES, IZABEL ; YUAN, ZUO-FEI ; LIU, SHICHONG ; SOUZA, GLAUCIA MENDES ; GARCIA, BENJAMIN A. ; CASAS-MOLLANO, J. ARMANDO. Analysis of Histones H3 and H4 Reveals Novel and Conserved Post-Translational Modifications in Sugarcane. Plos One. v. 10, p. e0134586, 2015. Qualis: A1
48.	NAKATA, A. ; YOSHIDA, R. ; YAMAGUCHI, R. ; YAMAUCHI, M. ; Tamada, Y. ; Fujita, André ; Imoto, S. ; Shimamura, T. ; HIGUCHI, T. ; NOMURA, M. ; KIMURA, T. ; NOKIHARA, H. ; HIGASHIYAMA, M. ; KONDOH, K. ; NISHIHARA, H. ; TOJO, A. ; YANO, S. ; MIYANO, S. ; GOTOH, N.. Elevated beta-catenin pathway as a novel target for patients with resistance to EGF receptor targeting drugs. Scientific Reports. v. 5, p. 13076, 2015. Qualis: A2
49.	NAKAYA, H. I.; Pulendran, B.. Vaccinology in the era of high-throughput biology. Philosophical Transactions - Royal Society. Biological Sciences (Print). v. 370, p. 20140146-20140146, 2015. Qualis: Não identificado (BIOLOGICAL SCIENCES)
50.	NAKAYA, HELDER I.; HAGAN, THOMAS ; DURAISINGHAM, SAI S. ; LEE, EVA K. ; Kwissa, Marcin ; Rouphael, Nadine ; FRASCA, DANIELA ; GERSTEN, MERRIL ; MEHTA, ANEESH K. ; GAUJOUX, RENAUD ; Li, Gui-Mei ; GUPTA, SHAKTI ; Ahmed, Rafi ; MULLIGAN, MARK J. ; SHEN-ORR, SHAI ; BLOMBERG, BONNIE B. ; SUBRAMANIAM, SHANKAR ; Pulendran, Bali. Systems Analysis of Immunity to Influenza Vaccination across Multiple Years and in Diverse Populations Reveals Shared Molecular Signatures. Immunity (Cambridge, Mass.). v. 43, p. 1186-1198, 2015. Qualis: A1
51.	Nakaya, Helder I; BRUNA-ROMERO, OSCAR. Is the gut microbiome key to modulating vaccine efficacy?. Expert Review of Vaccines. v. 1, p. 1-3, 2015. Qualis: A2
52.	NAVARRO, ISABELA CUNHA ; FERREIRA, FREDERICO MORAES ; Nakaya, Helder I. ; BARON, MONIQUE ANDRADE ; VILAR-PEREIRA, GLÁUCIA ; PEREIRA, ISABELA RESENDE ; SILVA, ANA MARIA GONÇALVES ; REAL, JULIANA MONTE ; DE BRITO, THALES ; CHEVILLARD, CHRISTOPHE ; LANNES-VIEIRA, JOSELI ; KALIL, JORGE ; CUNHA-NETO, EDECIO ; FERREIRA, LUDMILA RODRIGUES PINTO. MicroRNA Transcriptome Profiling in Heart of Trypanosoma cruzi-Infected Mice: Parasitological and Cardiological Outcomes. PLoS Neglected Tropical Diseases (Online). v. 9, p. e0003828, 2015. Qualis: A1
53.	NUNES, DIANA N. ; Dias-Neto, Emmanuel ; CARDÓ-VILA, MARINA ; EDWARDS, JULIANNA K. ; DOBROFF, ANDREY S. ; GIORDANO, RICARDO J. ; MANDELIN, JAMI ; BRENTANI, HELENA P. ; HASSELGREN, CATRIN ; YAO, VIRGINIA J. ; MARCHIÒ, SERENA ; PEREIRA, CARLOS A. B. ; Passetti, Fabio ; CALIN, GEORGE A. ; SIDMAN, RICHARD L. ; Arap, Wadih ; Pasqualini, Renata. Synchronous down-modulation of miR-17 family members is an early causative event in the retinal angiogenic switch. Proceedings of the National Academy of Sciences of the United States of America. v. 112, p. 3770-5, 2015. Qualis: A1
54.	OKADA, SABRINA SAYORI ; DE OLIVEIRA, EDSON MENDES ; DE ARAÚJO, TOMAZ HENRIQUE ; RODRIGUES, MARIA RITA ; ALBUQUERQUE, RENATA CHAVES ; MORTARA, RENATO ARRUDA ; TANIWAKI, NOEMI NOSOMI ; Nakaya, Helder Imoto ; CAMPA, ANA ; MORENO, ANA CAROLINA RAMOS. Myeloperoxidase in human peripheral blood lymphocytes: Production and subcellular localization. Cellular Immunology (Print). v. 2015, p. 2015, 2015. Qualis: A4
55.	OZAHATA, MINA CINTHO ; Sabino, Ester Cerdeira ; DIAZ, R. S. ; CESAR-JR, ROBERTO M ; FERREIRA, J. E.. Data-intensive analysis of HIV mutations. BMC Bioinformatics. v. 16, p. PMC4344997, 2015. Qualis: A1
56.	PEDRO, S. L. S. ; ALVES, J. M. P. ; BARRETO, A. S. ; LIMA, A. O. S.. Evidence of Positive Selection of Aquaporins Genes from Pontoporia blainvillei during the Evolutionary Process of Cetaceans. Plos One. v. 10, p. e0134516, 2015. Qualis: A1
57.	PEDROSO, J. L. ; ROCHA, C. R. R. ; MACEDO-SOUZA, L. I. ; DE MARIO, V. ; MARQUES, W. ; BARSOTTINI, O. G. P. ; BULLE OLIVEIRA, A. S. ; Menck, C. F. M. ; KOK, F.. Mutation in PNKP presenting initially as axonal Charcot-Marie-Tooth disease. Neurology: Genetics. v. 1, p. e30-e30, 2015. Qualis: B2 (NEUROLOGY GENETICS)
58.	QUINTO-SANCHEZ, M. ; ADHIKARI, K. ; ACUNA-ALONZO, V. ; CINTAS, C. ; CERQUEIRA, C. C. S. ; RAMALLO, V. ; CASTILLO, L. ; FERRERA, A. ; JARAMILLO, C. ; ARIAS, W. ; FUENTES, M. ; EVERARDO, P. ; AVILA, F. ; GOMEZ-VALDES, J. ; HÜNEMEIER, T. ; GIBBON, S. ; GALLO, C. ; POLETTI, G. ; ROSIQUE, J. ; BORTOLINI, M. C. ; et.al. Facial asymmetry and genetic ancestry in Latin American admixed populations. American Journal of Physical Anthropology,. p. n/a-n/a, 2015. Qualis: A2 (AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY)
59.	ROSA-E-SILVA, JULIO CESAR ; VIRGINIO JUNIOR, LUIZ APARECIDO ; Meola, Juliana ; DENTILLO, DANIEL BLASIOLI ; Ferriani, Rui Alberto ; Giuliatti, Silvana. A system for storing, retrieving, and comparing gene expression information of patients with endometriosis. American Journal of Obstetrics and Gynecology (Print). v. 212, p. 407-407, 2015. Qualis: A1
60.	ROZENCHAN, PATRICIA BORTMAN ; PASINI, FATIMA SOLANGE ; ROELA, ROSIMEIRE A. ; KATAYAMA, MARIA LÚCIA HIRATA ; MUNDIM, FIORITA GONZÁLES LOPES ; BRENTANI, HELENA ; LYRA, EDUARDO C. ; Brentani, Maria Mitzi. Specific upregulation of RHOA and RAC1 in cancer-associated fibroblasts found at primary tumor and lymph node metastatic sites in breast cancer. Tumor Biology. v. 36, p. 9589-9597, 2015. Qualis: A4
61.	SALUM, GIOVANNI ABRAHÃO ; GADELHA, ARY ; PAN, PEDRO MARIO ; MORIYAMA, TAIS SILVEIRA ; GRAEFF-MARTINS, ANA SOLEDADE ; TAMANAHA, ANA CARINA ; ALVARENGA, PEDRO ; KRIEGER, FERNANDA VALLE ; FLEITLICH-BILYK, BACY ; JACKOWSKI, ANDREA ; SATO, JOÃO RICARDO ; BRIETZKE, ELISA ; POLANCZYK, GUILHERME VANONI ; BRENTANI, HELENA ; DE JESUS MARI, JAIR ; DO ROSÁRIO, MARIA CONCEIÇÃO ; MANFRO, GISELE GUS ; BRESSAN, RODRIGO AFFONSECA ; MERCADANTE, MARCOS TOMANIK ; Miguel, Eurípedes Constantino ; et.al. High risk cohort study for psychiatric disorders in childhood: rationale, design, methods and preliminary results. International Journal of Methods in Psychiatric Research (Cessou em 1996). v. 24, p. 58-73, 2015. Qualis: A3
62.	SANTOS, S. S. ; GALATRO, T. F. A. ; WATANABE, R. A. ; SHINJO, Sueli Mieko Oba ; MARIE, Suely Kazue Nagahashi ; FUJITA, A.. CoGA: an R package to identify differentially co-expressed gene sets by analyzing the graph spectra. Plos One. v. 10, p. 1-17, 2015. Qualis: A1
63.	SCHWARTZ, ALLISON R. ; Potnis, Neha ; TIMILSINA, SUJAN ; WILSON, MARK ; PATANÉ, JOSÉ ; MARTINS, JOAQUIM ; MINSAVAGE, GERALD V. ; DAHLBECK, DOUGLAS ; AKHUNOVA, ALINA ; ALMEIDA, NALVO ; VALLAD, GARY E. ; BARAK, JERI D. ; WHITE, FRANK F. ; MILLER, SALLY A. ; RITCHIE, DAVID ; GOSS, ERICA ; BART, REBECCA S. ; Setubal, João C. ; Jones, Jeffrey B. ; STASKAWICZ, BRIAN J. ; et.al. Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Frontiers in Microbiology (Online). v. 6, p. 535, 2015. Qualis: A1
64.	Setubal, Joao C.; ALMEIDA, NALVO. TCBB Special Section on the Brazilian Symposium on Bioinformatics 2013. IEEE/ACM Transactions on Computational Biology and Bioinformatics (Print). v. 12, p. 499-499, 2015. Qualis: A1
65.	SEVERINO, PATRICIA ; OLIVEIRA, LILIANE SANTANA ; ANDREGHETTO, FLAVIA MAZIERO ; TORRES, NATALIA ; CURIONI, OTAVIO ; CURY, P. M. ; TOPORCOV, TATIANA NATASHA ; PASCHOAL, ALEXANDRE ROSSI ; DURHAM, A. M.. Abstract 3983: MicroRNAs and other small RNA molecules expressed in metastatic and non-metastatic oral squamous cell carcinoma. CANCER RESEARCH. v. 75, p. 3983-3983, 2015. Qualis: A1
66.	SEVERINO, PATRICIA ; OLIVEIRA, LILIANE SANTANA ; ANDREGHETTO, FLÁVIA MAZIERO ; TORRES, NATALIA ; CURIONI, OTÁVIO ; CURY, PATRICIA MALUF ; TOPORCOV, TATIANA NATASHA ; Paschoal, Alexandre Rossi ; Durham, Alan Mitchell. Small RNAs in metastatic and non-metastatic oral squamous cell carcinoma. BMC Medical Genomics. v. 8, p. 1-15, 2015. Qualis: A3
67.	SILVA-ROCHA, R. ; Pontelli, MC ; FURTADO, G. P. ; ZARAMELA, LIVIA S. ; Koide, Tie. Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum. Plos One. v. 10, p. e0129215, 2015. Qualis: A1
68.	SIMÕES, SÉRGIO N ; MARTINS, DAVID C ; PEREIRA, CARLOS AB ; Hashimoto, Ronaldo F ; BRENTANI, HELENA. NERI: network-medicine based integrative approach for disease gene prioritization by relative importance. BMC Bioinformatics. v. 16, p. S9, 2015. Qualis: A1
69.	SKOGLUND, P. ; MALLICK, S. ; BORTOLINI, M. C. ; CHENNAGIRI1, N. ; HÜNEMEIER, T. ; Petzl-Erler, ML ; SALZANO, F. M. ; Patterson, N ; REICH, D.. Genetic evidence for two founding populations of the Americas. Nature (London). v. 00, p. 000-000, 2015. Qualis: A1
70.	SOUZA, G. M. Shedding light on bioenergy. Biofuels, Bioproducts and Biorefining. v. 9, p. 338-338, 2015.Qualis: A3
71.	SOUZA, GLAUCIA MENDES ; VICTORIA, R. L. ; VERDADE, L. M. ; JOLY, C. A. ; NETTO, P. E. A. ; CRUZ, C. H. B. ; CANTARELLA, H. ; CHUM, H. ; CORTEZ, L. A. B. ; DIAZ-CHAVEZ, R. ; FERNANDES, E. ; FINCHER, G. ; FINCHER, G. B. ; GOLDEMBERG, J. ; NOGUEIRA, L. A. H. ; HUNTLEY, B. J. ; JOHNSON, F. X. ; KAFFKA, S. ; KARP, A. ; SLUYS MAV. ; et.al. SCOPE Bioenergy and Sustainability Technical Summary. Bioenergy and Sustainability bridging the gaps. v. 72, p. 1-779, 2015.Qualis: Não identificado (BIOENERGY AND SUSTAINABILITY BRIDGING THE GAPS)
72.	SOUZA, GLAUCIA MENDES; BALLESTER, MARIA VICTORIA R. ; VICTORIA, REYNALDO L. ; DIAZ-CHAVEZ, ROCIO. Editorial note on bioenergy and sustainability-Bridging the gaps. Environmental Development. v. 15, p. 1-2, 2015. Qualis: A1
73.	SOUZA, GLAUCIA MENDES; FILHO, RUBENS MACIEL. Industrial Biotechnology and Biomass: What Next for Brazil's Future Energy and Chemicals?. Industrial Biotechnology (New Rochelle). v. 12(1), p. 24-25, 2015. Qualis: B1
74.	Souza, Gláucia Mendes; VICTORIA, R. L. ; VERDADE, L. M. ; JOLY, C. A. ; NETTO, P. E. A. ; CRUZ, C. H. B. ; CANTARELLA, H. ; CHUM, H. L. ; CORTEZ, L. A. B. ; DIAZ-CHAVEZ, R. ; FERNANDES, E. ; FINCHER, G. B. ; FOUST, T. ; GOLDEMBERG, J. ; NOGUEIRA, L. A. H. ; HUNTLEY, B. J. ; JOHNSON, F. X. ; KAFFKA, S. ; KARP, A. ; LEAL, M. R. L. V. ; et.al. Bioenergy & Sustainability. Policy Brief.. SCOPE. v. 1, p. 6, 2015.Qualis: Não identificado (SCOPE)
75.	SWARNKAR, TRIPTI ; SIMÕES, SERGIO NERY ; ANURA, ANJI ; BRENTANI, HELENA ; CHATTERJEE, JYOTIRMOY ; HASHIMOTO, RONALDO FUMIO ; MARTINS, DAVID CORREA ; MITRA, PABITRA. Identifying dense subgraphs in protein-protein interaction network for gene selection from microarray data. Network Modeling Analysis in Health Informatics and Bioinformatics. v. 4, p. 1-18, 2015. Qualis: Não identificado (NETWORK MODELING ANALYSIS IN HEALTH INFORMATICS AND BIOINFORMATICS)
76.	TAVARES, E. Q. P. ; DE SOUZA, A. P. ; BUCKERIDGE, M. S.. How endogenous plant cell-wall degradation mechanisms can help achieve higher efficiency in saccharification of biomass. Journal of Experimental Botany (Online). v. 66, p. 4133-4143, 2015. Qualis: A1
77.	TAVARES, EVELINE Q.P. ; Buckeridge, Marcos S.. DO PLANT CELL WALLS HAVE A CODE?. Plant Science (Limerick). v. xx, p. xxx-xxxx, 2015. Qualis: A1
78.	UREN, PHILIP J. ; VO, DAT T. ; ROSA DE ARAUJO, PATRICIA ; PÖTSCHKE, REBECCA ; BURNS, SUZANNE C. ; BAHRAMI-SAMANI, EMAD ; QIAO, MEI ; DE SOUSA ABREU, RAQUEL ; Nakaya, Helder I ; CORREA, BRUNA R. ; KÜHNÖL, CASPAR ; ULE, JERNEJ ; MARTINDALE, JENNIFER L. ; ABDELMOHSEN, KOTB ; GOROSPE, MYRIAM ; SMITH, ANDREW D. ; PENALVA, LUIZ O.F.. The RNA-binding protein Musashi1 is a central regulator of adhesion pathways in glioblastoma. Molecular and Cellular Biology (Print). v. 1, p. MCB.00410-15, 2015. Qualis: Não identificado (MOLECULAR AND CELLULAR BIOLOGY)
79.	VESSONI, ALEXANDRE TEIXEIRA ; QUINET, ANNABEL ; DE ANDRADE-LIMA, LEONARDO CARMO ; MARTINS, DAVI JARDIM ; GARCIA, CAMILA CARRIÃO MACHADO ; ROCHA, CLARISSA RIBEIRO REILY ; VIEIRA, DEBORA BRAGA ; Menck, Carlos Frederico Martins. Chloroquine-induced glioma cells death is associated with mitochondrial membrane potential loss, but not oxidative stress. Free Radical Biology & Medicine. v. 90, p. 91-100, 2015. Qualis: A1
80.	VIEIRA DA SILVA PELLEGRINA, DIOGO ; SEVERINO, PATRICIA ; VIEIRA BARBEIRO, HERMES ; MAZIERO ANDREGHETTO, FLÁVIA ; TADEU VELASCO, IRINEU ; POSSOLO DE SOUZA, HERALDO ; MACHADO, MARCEL CERQUEIRA CÉSAR ; REIS, EDUARDO MORAES ; PINHEIRO DA SILVA, FABIANO. Septic Shock in Advanced Age: Transcriptome Analysis Reveals Altered Molecular Signatures in Neutrophil Granulocytes. Plos One. v. 10, p. e0128341, 2015. Qualis: A1
81.	VIEIRA, LEILA DO NASCIMENTO ; DOS ANJOS, KARINA GOULART ; FAORO, HELISSON ; FRAGA, HUGO PACHECO DE FREITAS ; GRECO, THIAGO MACHADO ; PEDROSA, FÁBIO DE OLIVEIRA ; DE SOUZA, EMANUEL MALTEMPI ; ROGALSKI, MARCELO ; de SOUZA, Robson Francisco ; GUERRA, MIGUEL PEDRO. Phylogenetic inference and SSR characterization of tropical woody bamboos tribe Bambuseae (Poaceae: Bambusoideae) based on complete plastid genome sequences. Current Genetics. v. NA, p. 1-11, 2015. Qualis: A3
82.	VIEIRA, NATASSIA M. ; ELVERS, INGEGERD ; ALEXANDER, MATTHEW S. ; MOREIRA, YURI B. ; ERAN, ALAL ; GOMES, JULIANA P. ; MARSHALL, JAMIE L. ; KARLSSON, ELINOR K. ; Verjovski-Almeida, Sergio ; LINDBLAD-TOH, KERSTIN ; KUNKEL, LOUIS M. ; Zatz, Mayana. Jagged 1 Rescues the Duchenne Muscular Dystrophy Phenotype. Cell (Cambridge). v. 163, p. 1204-1213, 2015. Qualis: A1
83.	Vieira, R.F.C. ; VIDOTTO, O ; VIEIRA, T. S. W. J. ; GUIMARÃES, A. M. S. ; DOS SANTOS, A. P. ; DO NASCIMENTO, NAÍLA CANNES ; MARTINS, T. F. ; LABRUNA, M. B. ; MARCONDES, M. ; BIONDO, A. W. ; MESSICK, J. B.. Molecular investigation of hemotropic mycoplasmas in human beings, dogs and horses in a rural settlement in Southern Brazil. Revista do Instituto de Medicina Tropical de São Paulo. v. 57, p. XX, 2015.Qualis: B1
84.	VIEIRA, T. S. W. J. ; VIDOTTO, O. ; GUIMARAES, A. M. S. ; SANTOS, A. P. ; NASCIMENTO, N. C. ; FINGER, M. A. P. ; BARROS-FILHO, I. R. ; DORNBUSCH, P. T. ; Biondo, Alexander W. ; Vieira, Rafael F.C. ; MESSICK, J. B.. Use of pan-hemoplasma PCR for screening horses highly exposed to tick bites from southern Brazil. Semina. Ciências Agrárias (Online). v. 36, p. 291-294, 2015.Qualis: Não identificado (CIÊNCIAS AGRÁRIAS)
85.	VIRGINIO JUNIOR, L. A. ; MEOLA, J. ; DENTILLO, D. B. ; ROSA E SILVA, Júlio César ; FERRIANI, Rui Alberto ; SILVANA GIULIATTI. System for Storing, Recovering, and Comparing Gene Expression Information from Patients with Endometriosis. Journal of Health Informatics. v. 7, p. 116-120, 2015.Qualis: B3
86.	Yamaguti, Maurício ; Oliveira, Rosângela C ; MARQUES, LUCAS M ; Buzinhani, Melissa ; BUIM, MARCOS R ; Neto, Renata L ; GUIMARÃES, ANA MÁRCIA S ; Timenetsky, Jorge. Molecular characterisation of Mycoplasma hyorhinis isolated from pigs using pulsed-field gel electrophoresis and 16S rRNA sequencing. Veterinary Record Open. v. 2, p. e000093, 2015. Qualis: C
87.	YU, DONGMEI ; MATHEWS, CAROL A. ; SCHARF, JEREMIAH M. ; NEALE, BENJAMIN M. ; DAVIS, LEA K. ; GAMAZON, ERIC R. ; DERKS, ESKE M. ; EVANS, PATRICK ; EDLUND, CHRISTOPHER K. ; CRANE, JACQUELYN ; FAGERNESS, JESEN A. ; OSIECKI, LISA ; GALLAGHER, PATIENCE ; GERBER, GLORIA ; HADDAD, STEPHEN ; ILLMANN, CORNELIA ; MCGRATH, LAUREN M. ; MAYERFELD, CATHERINE ; AREPALLI, SAMPATH ; SAMAIA, H. B. ; et.al. Cross-Disorder Genome-Wide Analyses Suggest a Complex Genetic Relationship Between Tourette?s Syndrome and OCD. The American Journal of Psychiatry. v. 172, p. 82-93, 2015. Qualis: A1
88.	ZHANG, YUNZENG ; JALAN, NEHA ; ZHOU, XIAOFENG ; GOSS, ERICA ; Jones, Jeffrey B ; Setubal, João C ; DENG, XIAOLING ; WANG, NIAN. Positive selection is the main driving force for evolution of citrus canker-causing Xanthomonas. The ISME Journal (Print). v. 15, p. 1-11, 2015. Qualis: A1
89.	ZIMPEL, CRISTINA KRAEMER ; GRAZZIOTTIN, A. L. ; BARROS-FILHO, I. R. ; GUIMARÃES, A. M. S. ; SANTOS, L. C. ; MORAES, W. ; CUBAS, Z. S. ; OLIVEIRA, M. J. ; PITUCO, E. M. ; LARA, M. C. C. S. H. ; VILLALOBOS, E. M. C. ; SILVA, L. M. P. ; CUNHA, E. M. S. ; CASTRO, V. ; BIONDO, A. W.. Occurrences of antibodies anti -Toxoplasma gondii, Neospora caninum and Leptospira interrogans in a captive deer herd in Southern Brazil. Revista Brasileira de Parasitologia Veterinária (Online). v. 24, p. 482-487, 2015.Qualis: A2

2014

1.	Arenque, Bruna C. ; GRANDIS, ADRIANA ; POCIUS, OLIDAN ; DE SOUZA, AMANDA P. ; Buckeridge, Marcos S.. Responses of Senna reticulata, a legume tree from the Amazonian floodplains, to elevated atmospheric CO2 concentration and waterlogging. Trees (Berlin. Print). v. 28, p. 1021-1034, 2014. Qualis: Não identificado (PRINT))
2.	AZEVEDO, H. ; Fujita, André ; BANDO, S. Y. ; IAMASHITA, P. ; MOREIRA-FILHO, C. A.. Transcriptional network analysis reveals that AT1 and AT2 Angiotensin II receptors are both involved in the regulation of genes essential for glioma progression. Plos One. v. 9, p. e110934, 2014. Qualis: A1
3.	BALEOTTI, WILSON ; RUIZ, MARCELO ORTEGA ; FABRON, ANTONIO ; CASTILHO, LILIAN ; Giuliatti, Silvana ; Donadi, Eduardo Antonio. HLA-DRB1 *07:01 allele is primarily associated with the Diego a alloimmunization in a Brazilian population. Transfusion (Arlington, Va.). v. 54, p. n/a-n/a, 2014. Qualis: A3
4.	Barroso da Silva, Fernando Luís; BOSTRÖM, MATHIAS ; PERSSON, CLAS. Effect of Charge Regulation and Ion-Dipole Interactions on the Selectivity of Protein-Nanoparticle Binding. Langmuir. v. 30, p. 4078-4083, 2014. Qualis: A1
5.	BASTOS, ELEN PEREIRA ; BRENTANI, HELENA ; PASINI, FATIMA SOLANGE ; SILVA, ADERBAL RUY T. ; TORRES, CESAR HENRIQUE ; Puga, Renato David ; OLIVIERI, ELOISA HELENA RIBEIRO ; PIOVEZANI, AMANDA RUSISKA ; PEREIRA, CARLOS ALBERTO DE BRAGANÇA ; MACHADO-LIMA, ARIANE ; Carraro, Dirce Maria ; Brentani, Maria Mitzi. MicroRNAs Discriminate Familial from Sporadic Non-BRCA1/2 Breast Carcinoma Arising in Patients ≤35 Years. Plos One. v. 9, p. e101656, 2014. Qualis: A1
6.	BUCKERIDGE, MARCOS S.; DE SOUZA, AMANDA P.. Breaking the -Glycomic Code- of Cell Wall Polysaccharides May Improve Second-Generation Bioenergy Production from Biomass. BioEnergy Research. v. first, p. 000-000, 2014. Qualis: A1
7.	BURO, C. ; BECKMANN, S. ; OLIVEIRA, K. C. ; DISSOUS, C. ; CAILLIAU, K. ; MARHOFER, R. J. ; SELZER, P. M. ; Verjovski-Almeida, S. ; GREVELDING, C. G.. Imatinib Treatment Causes Substantial Transcriptional Changes in Adult Schistosoma mansoni In Vitro Exhibiting Pleiotropic Effects. PLoS Neglected Tropical Diseases. v. 8, p. e2923, 2014. Qualis: A1
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63.	TORTO-ALALIBO, TRUDY ; PURWANTINI, ENDANG ; LOMAX, JANE ; SETUBAL, JOãO C. ; MUKHOPADHYAY, BISWARUP ; TYLER, BRETT M.. Genetic resources for advanced biofuel production described with the Gene Ontology. Frontiers in Microbiology (Online). v. 5, p. 5:528, 2014. Qualis: A1
64.	VANKUREN, NICHOLAS W. ; VIBRANOVSKI, MARIA D.. A Novel Dataset for Identifying Sex-Biased Genes in Drosophila. JOURNAL OF GENOMICS. v. 2, p. 64-67, 2014. Qualis: C
65.	VIBRANOVSKI, M. D. Meiotic Sex Chromosome Inactivation in. JOURNAL OF GENOMICS. v. 2, p. 104-117, 2014. Qualis: C
66.	ZARAMELA, LIVIA S. ; VÊNCIO, RICARDO Z. N. ; TEN-CATEN, FELIPE ; BALIGA, NITIN S. ; Koide, Tie. Transcription Start Site Associated RNAs (TSSaRNAs) Are Ubiquitous in All Domains of Life. PLoS One. v. 9, p. e107680, 2014. Qualis: A1

2013

1.	ALMEIDA, FERNANDA N. ; Sabino, Ester C. ; TUNES, GISELA ; Schreiber, George B. ; B. DA SILVA, PEDRO PAULO S. ; CARNEIRO-PROIETTI, ANNA BARBARA F. ; Ferreira, João Eduardo ; Mendrone-Junior, Alfredo. Predictors of low haematocrit among repeat donors in São Paulo, Brazil: eleven year longitudinal analysis. Transfusion and Apheresis Science. v. 49, p. 553-559, 2013. Qualis: B1
2.	ALVES, J. M. P.; KLEIN, C. C. ; da Silva, Flávia Maia ; COSTA-MARTINS, A. G. ; Serrano, Myrna G. ; Buck, Gregory A ; VASCONCELOS, A. T. R. ; SAGOT, M.-F. ; MOTTA, M. C. M. ; Camargo, Erney P.. Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers. BMC Evolutionary Biology (Online). v. 13, p. 190, 2013. Qualis: A1
3.	Alves, João MP; Serrano, Myrna G. ; da Silva, Flávia Maia ; Voegtly, Logan ; Matveyev, Andrey V. ; Teixeira, Marta M. G. ; Camargo, Erney P. ; Buck, Gregory A. Genome Evolution and Phylogenomic Analysis of Candidatus Kinetoplastibacterium, the Betaproteobacterial Endosymbionts of Strigomonas and Angomonas. Genome Biology and Evolution. v. 5, p. 338-350, 2013. Qualis: A1
4.	Amorim, CEG ; Bisso-Machado, R ; RAMALLO, V. ; BORTOLINI, M. C. ; BONATTO, S. L. ; SALZANO, F. M. ; HÜNEMEIER, T.. A Bayesian Approach to Genome/Linguistic Relationships in Native South Americans. Plos One. v. 8, p. e64099, 2013. Qualis: A1
5.	Aurelien Mazurie ; ALVES, J. ; OZAKI, L. S. ; ZHOU, S. ; SCHWARTZ, D. ; BUCK, G. A.. Comparative Genomics of Cryptosporidium. Comparative and Functional Genomics. v. 2013, p. 1-8, 2013. Qualis: Não identificado (COMPARATIVE AND FUNCTIONAL GENOMICS)
6.	BATTIE-LACLAU, PATRICIA ; LACLAU, JEAN-PAUL ; PICCOLO, MARISA DE CASSIA ; ARENQUE, BRUNA CERSÓZIMO ; BERI, CONSTANCE ; MIETTON, LAURIANE ; MUNIZ, MARTA R. ALMEIDA ; JORDAN-MEILLE, LIONEL ; BUCKERIDGE, MARCOS SILVEIRA ; NOUVELLON, YANN ; RANGER, JACQUES ; BOUILLET, JEAN-PIERRE. Influence of potassium and sodium nutrition on leaf area components in Eucalyptus grandis trees. Plant and Soil (Print). v. 371, p. 19-35, 2013. Qualis: A1
7.	BECKEDORFF, F. C. F. ; OLIVEIRA, Ana Carolina Ayupe de ; CROCCI-SOUZA, R. ; AMARAL, M. S. ; Nakaya, Helder I ; SOLTYS, D. T. ; MENCK, Carlos F M ; Reis, Eduardo M ; REIS, EM ; VERJOVSKI-ALMEIDA, Sergio. The intronic long noncoding RNA ANRASSF1 recruits PRC2 to the RASSF1A promoter, decreasing RASSF1A isoform expression and Increasing cell proliferation. PLOS Genetics. v. 9, p. e1003705, 2013. Qualis: A1
8.	BECKEDORFF, FELIPE C. ; AYUPE, ANA C. ; CROCCI-SOUZA, RENAN ; AMARAL, MURILO S. ; Nakaya, Helder I. ; SOLTYS, DANIELA T. ; MENCK, CARLOS F. M. ; Reis, Eduardo M. ; VERJOVSKI-ALMEIDA, Sergio. The Intronic Long Noncoding RNA ANRASSF1 Recruits PRC2 to the RASSF1A Promoter, Reducing the Expression of RASSF1A and Increasing Cell Proliferation. PLOS Genetics (Online). v. 9, p. e1003705, 2013. Qualis: A1
9.	BECKEDORFF, FELIPE ; AMARAL, MURILO ; DEOCESANO-PEREIRA, CARLOS ; Verjovski-Almeida, Sergio. Long noncoding RNAs and their implications in cancer epigenetics. Bioscience Reports. v. 33, p. e00061, 2013. Qualis: A3
10.	Bisso-Machado, R ; RAMALLO, V. ; TARAZONA-SANTOS, E. ; SALZANO, F. M. ; BORTOLINI, M. C. ; HÜNEMEIER, T.. 5-HTTLPR genetic diversity and mode of subsistence in Native Americans. American Journal of Physical Anthropology. v. 00, p. 000-000, 2013. Qualis: A2
11.	BRASIL, CHRISTIANE REGINA SOARES ; DELBEM, ALEXANDRE CLAUDIO BOTAZZO ; da Silva, Fernando Luís Barroso. Multiobjective evolutionary algorithm with many tables for purely ab initio protein structure prediction. Journal of Computational Chemistry. v. 34, p. n/a-n/a, 2013. Qualis: A1
12.	Brentani, H; PAULA, C. S. ; BORDINI, D. ; ROLIM, D. ; SATO, F. ; PORTOLESE, J. ; PACIFICO, M. C. ; MCCRACKEN, J. T.. Autism spectrum disorders: an overview on diagnosis and treatment. Revista Brasileira de Psiquiatria (São Paulo. 1999. Impresso). v. 35, p. S62-S72, 2013. Qualis: Não identificado (IMPRESSO))
13.	BROWN, NEIL A. ; DE CASTRO, PATRÍCIA A. ; DE CASTRO PIMENTEL FIGUEIREDO, BÁRBARA ; SAVOLDI, MARCELA ; BUCKERIDGE, M. S. ; LOPES, M. L. ; DE LIMA PAULLILO, SILENE C. ; BORGES, EDUARDO P. ; Amorim, Henrique V. ; GOLDMAN, MARIA H.S. ; BONATTO, DIEGO ; MALAVAZI, IRAN ; GOLDMAN, GUSTAVO H.. Transcriptional profiling of Brazilian Saccharomyces cerevisiae strains selected for semi-continuous fermentation of sugarcane must. FEMS Yeast Research. v. 13, p. 277-290, 2013. Qualis: A3
14.	Buro, C ; Oliveira, K.C. ; Lu, Z ; Leutner, S ; Beckmann, S ; Dissous, C ; Cailliau, K ; Verjovski-Almeida, S. ; Grevelding, C. Transcriptome Analyses of Inhibitor-treated Schistosome Females Provide Evidence for Cooperating Src-kinase and TGFβ Receptor Pathways Controlling Mitosis and Eggshell Formation.. PLoS Pathogens. v. 9, p. e1003448, 2013. Qualis: A1
15.	CAMPOS, L. T. ; Brentani, H ; ROELA, R. A. ; KATAYAMA, M. L. H. ; LIMA, L. A. ; ROLIM, C. F. ; MILANI, C. ; FOLGUEIRA, M. A. A. K. ; BRENTANI, M. M.. Differences in transcriptional effects of 1α,25 dihydroxyvitamin D3 on fibroblasts associated to breast carcinomas and from paired normal breast tissues. Journal of Steroid Biochemistry and Molecular Biology. v. 133, p. 12-24, 2013. Qualis: A2
16.	Carraro, Dirce Maria ; KOIKE FOLGUEIRA, MARIA APARECIDA AZEVEDO ; GARCIA LISBOA, BIANCA CRISTINA ; RIBEIRO OLIVIERI, ELOISA HELENA ; VITORINO KREPISCHI, ANA CRISTINA ; DE CARVALHO, ALEX FIORINI ; DE CARVALHO MOTA, LOUISE DANIELLE ; Puga, Renato David ; DO SOCORRO MACIEL, MARIA ; MICHELLI, RODRIGO AUGUSTO DEPIERI ; DE LYRA, EDUARDO CARNEIRO ; GROSSO, STANA HELENA GIORGI ; Soares, Fernando Augusto ; DE SOUZA WADDINGTON ACHATZ, MARIA ISABEL ALVES ; BRENTANI, HELENA ; Moreira-Filho, Carlos Alberto ; Brentani, Maria Mitzi. Comprehensive Analysis of BRCA1, BRCA2 and TP53 Germline Mutation and Tumor Characterization: A Portrait of Early-Onset Breast Cancer in Brazil. Plos One. v. 8, p. e57581, 2013. Qualis: A1
17.	CHILE, THAIS ; FORTES, MARIA ANGELA ; CORRÊA-GIANNELLA, MARIA LÚCIA ; Brentani, Helena Paula ; AUGUSTO, DURVANEI MARIA ; Puga, Renato David ; DE PAULA, VANESSA DE ; KUBRUSLY, MARCIA SALDANHA ; NOVAK, ESTELA MARIA ; BACCHELLA, TELÉSFORO ; GIORGI, RICARDO RODRIGUES. HOXB7 mRNA is overexpressed in pancreatic ductal adenocarcinomas and its knockdown induces cell cycle arrest and apoptosis. BMC Cancer (Online). v. 13, p. 451, 2013. Qualis: A2
18.	COFIEL, LUCIANA ; BASSI, DÉBORA U. ; RAY, RYAN KUMAR ; PIETROBON, RICARDO ; BRENTANI, HELENA. Detecting Dissonance in Clinical and Research Workflow for Translational Psychiatric Registries. Plos One. v. 8, p. e75167, 2013. Qualis: A1
19.	CORTAT, BARBARA ; GARCIA, CAMILA CARRIÃO MACHADO ; QUINET, ANNABEL ; SCHUCH, A.P. ; de Lima-Bessa, Keronninn Moreno ; MENCK CF. The relative roles of DNA damage induced by UVA irradiation in human cells. Photochemical & Photobiological Sciences. v. 12, p. 1483-1495, 2013. Qualis: A3
20.	da Silva, Fernando Luis Barroso. Peculiaridades nos Mecanismos Moleculares de Proteínas em Solução Aquosa: exemplo da importância do equilíbrio ácido-base para aplicações em Biotecnologia. Quimica. . v. 131, p. 43-48, 2013.Qualis: Não identificado ()
21.	DARRASSE, ARMELLE ; CARRÈRE, SÉBASTIEN ; BARBE, VALÉRIE ; BOUREAU, TRISTAN ; ARRIETA-ORTIZ, MARIO L ; BONNEAU, SOPHIE ; BRIAND, MARTIAL ; BRIN, CHRYSTELLE ; COCIANCICH, STÉPHANE ; DURAND, KARINE ; FOUTEAU, STÉPHANIE ; GAGNEVIN, LIONEL ; GUÉRIN, FABIEN ; GUY, ENDRICK ; INDIANA, ARNAUD ; Koebnik, Ralf ; LAUBER, EMMANUELLE ; MUNOZ, ALEJANDRA ; NOËL, LAURENT D ; SLUYS MAV. ; et.al. Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads. BMC Genomics. v. 14, p. 761, 2013. Qualis: A2
22.	De Almeida-Neto, Cesar ; Sabino, Ester Cerdeira ; Liu, Jing ; Blatyta, Paula Fraiman ; Mendrone-Junior, Alfredo ; Salles, Nanci Alves ; Leão, Silvana Carneiro ; Wright, David J. ; Basques, Fernando Valadares ; Ferreira, João Eduardo ; Busch, Michael P. ; Murphy, Edward L. ; NHLBI RETROVIRUS EPIDEMIOLOGY DONOR STUDY-II (REDS-II), INTERNATIONAL COMPONENT. Prevalence of serologic markers for hepatitis B and C viruses in Brazilian blood donors and incidence and residual risk of transfusion transmission of hepatitis C virus. Transfusion (Arlington, Va.). v. 53, p. 827-834, 2013. Qualis: A3
23.	DE GODOY, F. ; BERMUDEZ, L. ; LIRA, B. S. ; DE SOUZA, A. P. ; ELBL, P. ; DEMARCO, D. ; ALSEEKH, S. ; INSANI, M. ; BUCKERIDGE, M. S. ; ALMEIDA, J. ; GRIGIONI, G. ; FERNIE, A. R. ; CARRARI, F. ; ROSSI, M.. Galacturonosyltransferase 4 silencing alters pectin composition and carbon partitioning in tomato. Journal of Experimental Botany (Online). v. 64, p. 2449-2466, 2013. Qualis: A1
24.	DE SIQUEIRA FERREIRA, SAVIO ; NISHIYAMA, MILTON ; PATERSON, ANDREW H ; SOUZA, GLAUCIA. Biofuel and energy crops: high-yield Saccharinae take center stage in the post-genomics era. GenomeBiology.com (London. Print). v. 14, p. 210, 2013. Qualis: Não identificado (PRINT))
25.	DE SIQUEIRA SANTOS, S. ; TAKAHASHI, D. Y. ; NAKATA, A. ; FUJITA, A.. A comparative study of statistical methods used to identify dependencies between gene expression signals. Briefings in Bioinformatics. v. 15, p. 906-918, 2013. Qualis: A1
26.	DE SOUZA, ALESSANDRA A. ; IONESCU, MICHAEL ; BACCARI, CLELIA ; da Silva, Aline M. ; LINDOW, STEVEN E.. Phenotype Overlap in Xylella fastidiosa Is Controlled by the Cyclic Di-GMP Phosphodiesterase Eal in Response to Antibiotic Exposure and Diffusible Signal Factor-Mediated Cell-Cell Signaling. APPLIED AND ENVIRONMENTAL MICROBIOLOGY. v. 79, p. 3444-3454, 2013. Qualis: A1
27.	DE SOUZA, AMANDA P. ; ARUNDALE, REBECCA A. ; DOHLEMAN, FRANK G. ; LONG, STEPHEN P. ; BUCKERIDGE, M. S.. Will the exceptional productivity of Miscanthus x giganteus increase further under rising atmospheric CO2?. Agricultural and Forest Meteorology (Print). v. 171-172, p. 82-92, 2013. Qualis: A2 (AGRICULTURAL AND FOREST ENTOMOLOGY)
28.	De Souza, Amanda Pereira ; LEITE, DÉBORA C. C. ; PATTATHIL, SIVAKUMAR ; BUCKERIDGE, M. S. ; HAHN, MICHAEL G.. Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production. BioEnergy Research. v. 6, p. 564-579, 2013. Qualis: A1
29.	do Nascimento, N. C. ; DOS SANTOS, A. P. ; CHU, Y. ; GUIMARAES, A. M. S. ; PAGLIARO, A. ; MESSICK, J. B.. Genome Sequence of Mycoplasma parvum (Formerly Eperythrozoon parvum), a Diminutive Hemoplasma of the Pig. Genome Announcements. v. 1, p. e00986-13-e00986-13, 2013. Qualis: B3
30.	FACHEL, Angela A ; Tahira, Ana C ; VILELLA-ARIAS, SANTIAGO A ; Maracaja-Coutinho, Vinicius ; GIMBA, ETEL RP ; Vignal, Giselle M ; CAMPOS, FRANZ S ; Reis, Eduardo M ; REIS, EM ; VERJOVSKI-ALMEIDA, Sergio. Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations. Molecular Cancer. v. 12, p. 140, 2013. Qualis: A1
31.	Fernandes-Lima, Z. S. ; Paixão-Côrtes, Vanessa R ; Andrade, A. K. M. ; Fernandes, A. S. ; Coronado, B. N. L. ; Monte Filho, H. P. ; Santos, M. J. ; Omena Filho, R. L. ; Biondi, F. C. ; Ruiz-Linares, Andrés ; RAMALLO, V. ; HÜNEMEIER, T. ; SCHULER-FACCINI, L. ; MONLLEO, I. L.. Ocular And Craniofacial Phenotypes In A Large Brazilian Family With Congenital Aniridia. Clinical Genetics,. p. n/a-n/a, 2013. Qualis: A3 (CLINICAL GENETICS)
32.	FIORI, G. M. L. ; FACHIN, A. L. ; CORREA, V. S. C. ; BERTONI, B. W. ; Giuliatti, S ; AMUI, S. F. ; FRANÇA, S. C. ; PEREIRA, A. M. S.. Antimicrobial Activity and Rates of Tannins in Stryphnodendron adstringens Mart. Accessions Collected in the Brazilian Cerrado. American Journal of Plant Sciences. v. 04, p. 2193-2198, 2013. Qualis: C
33.	Fujita, André; TAKAHASHI, DANIEL Y. ; PATRIOTA, ALEXANDRE G.. A non-parametric method to estimate the number of clusters. Computational Statistics & Data Analysis (Print). v. 73, p. 27-39, 2013. Qualis: A2
34.	GALLETII, M. F. B. M. ; Fujita, Andre ; NISHIYAMA-JR., M. Y. ; MALOSSI, C. D. ; PINTER, A. ; SOARES, J. F. ; DAFFRE, S. ; LABRUNA, M. B. ; FOGACA, A. C.. Natural Blood Feeding and Temperature Shift Modulate the Global Transcriptional Profile of Rickettsia rickettsii Infecting Its Tick Vector. Plos One. v. 8, p. e77388, 2013. Qualis: A1
35.	GARCIA, ANTONIO A. F. ; Mollinari, Marcelo ; Marconi, Thiago G. ; SERANG, OLIVER R. ; SILVA, RENATO R. ; VIEIRA, MARIA L. C. ; Vicentini, Renato ; COSTA, ESTELA A. ; MANCINI, MELINA C. ; GARCIA, MELISSA O. S. ; PASTINA, MARIA M. ; Gazaffi, Rodrigo ; MARTINS, ELIANA R. F. ; DAHMER, NAIR ; SFORÇA, DANILO A. ; SILVA, CLAUDIO B. C. ; BUNDOCK, PETER ; HENRY, ROBERT J. ; Souza, Glaucia M. ; Van Sluys, Marie-Anne ; et.al. SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids. Scientific Reports. v. 3, p. 3399, 2013. Qualis: A2
36.	GENTILE, AGUSTINA ; FERREIRA, THAÍS H. ; MATTOS, RAPHAEL S. ; DIAS, LARA I. ; Hoshino, Andrea A. ; CARNEIRO, MONALISA S. ; Souza, Glaucia M. ; CALSA, TERCÍLIO ; NOGUEIRA, REJANE M. ; ENDRES, LAURÍCIO ; Menossi, Marcelo. Effects of drought on the microtranscriptome of field-grown sugarcane plants. Planta (Heidelberg. v. 3, p. 783-798, 2013. Qualis: A1
37.	GOMEZ-VALDES, J. ; HÜNEMEIER, T. ; QUINTO-SANCHEZ, M. ; PASCHETTA, C. ; AZEVEDO, S. ; GONZALEZ, M. F. ; MARTINEZ-ABADIAS, N. ; Esparza, M ; PUCCARELLI, H. M. ; SALZANO, F. M. ; Bau, CD ; BORTOLINI, M. C. ; GONZALEZ-JOSE, R.. Lack of Support for the Association between Facial Shape and Aggression: A Reappraisal Based on a Worldwide Population Genetics Perspective. Plos One. v. 8, p. e52317, 2013. Qualis: A1
38.	GONZALEZ-KRISTELLER, D.C. ; GUTIYAMA, L.M. ; CAMPOS, A.H. ; SOARES, F.A. ; BRENTANI, H. ; MALNIC, B.. Odorant receptor genes are expressed in olfactory neuroblastoma. Genetics and Molecular Research. v. 12, p. 3479-3487, 2013. Qualis: B3
39.	Gonçalez, Thelma T. ; Sabino, Ester C. ; SCHLUMPF, KAREN S. ; Wright, David J. ; MENDRONE, ALFREDO ; LOPES, MARIA ; LEÃO, SILVANA ; MIRANDA, CAROLINA ; Capuani, Ligia ; CARNEIRO-PROIETTI, ANNA BARBARA F. ; BASQUES, FERNANDO ; Ferreira, João E. ; Busch, Michael ; Custer, Brian ; NHLBI RETROVIRUS EPIDEMIOLOGY DONOR STUDY-II (REDS-II), INTERNATIONAL COMPONENT. Analysis of donor deferral at three blood centers in Brazil. Transfusion (Arlington, Va.). v. 53, p. 531-538, 2013. Qualis: A3
40.	Gracioso, Louise Hase ; Avanzi, Ingrid Regina ; Baltazar, Marcela Passos Galluzzi ; Martins-Pinheiro M ; Karolski B ; MENCK CF ; NASCIMENTO, C. A. O. ; PERPETUO, E. A.. Proteome analysis of a phenol-degrading Achromobacter sp. C-1 isolated from an industrial area. Current Proteomics. v. 9, p. 280-289, 2013.Qualis: B4
41.	GRAS, DIANA E. ; PERSINOTI, GABRIELA F. ; PERES, NALU T.A. ; MARTINEZ-ROSSI, NILCE M. ; TAHIRA, ANA C. ; Reis, Eduardo M. ; REIS, EM ; PRADE, ROLF A. ; ROSSI, ANTONIO. Transcriptional profiling of Neurospora crassa -mak-2 reveals that mitogen-activated protein kinase MAK-2 participates in the phosphate signaling pathway. Fungal Genetics and Biology (Print). v. 60, p. 140-149, 2013. Qualis: A2
42.	GROSSO, STANA HELENA GIORGI ; Katayama, Maria Lucia Hirata ; ROELA, ROSIMEIRE APARECIDA ; Nonogaki, Suely ; Soares, Fernando Augusto ; BRENTANI, HELENA ; Lima, Leandro ; Folgueira, Maria Aparecida Azevedo Koike ; WAITZBERG, ANGELA FLÁVIA LOGULLO ; PASINI, FÁTIMA SOLANGE ; GÓES, JOÃO CARLOS GUEDES SAMPAIO ; BRENTANI, M. MITZI. Breast cancer tissue slices as a model for evaluation of response to rapamycin. Cell & Tissue Research (Internet). v. 352, p. 671-684, 2013. Qualis: A2
43.	HALCSIK, E. ; FORNI, M. F. ; FUJITA, A. ; VERANO-BRAGA, T. ; JENSEN, O. N. ; SOGAYAR, M. C.. New insights in osteogenic differentiation revealed by mass spectrometric assessment of phosphorylated substrates in murine skin mesenchymal cells. BMC Cell Biology (Online). v. 14, p. 47, 2013. Qualis: B1
44.	HIGA, C. H. A. ; ANDRADE, T. P. ; HASHIMOTO, R. F.. Growing Seed Genes from Time Series Data and Thresholded Boolean Networks with Perturbation. IEEE/ACM Transactions on Computational Biology and Bioinformatics (Print). v. 10, p. 37-49, 2013. Qualis: A1
45.	Hotta, Carlos Takeshi ; Nishiyama, Milton Yutaka ; SOUZA, GLAUCIA MENDES. Circadian Rhythms of Sense and Antisense Transcription in Sugarcane, a Highly Polyploid Crop. Plos One. v. 8, p. e71847, 2013. Qualis: A1
46.	HÜNEMEIER, T.; GOMEZ-VALDES, J. ; AZEVEDO, S. ; QUINTO-SANCHEZ, M. ; PASSAGLIA, L. ; SALZANO, F. M. ; SANCHEZ-MEJORADA, G. ; MARTINEZ-ABADIAS, N. ; BORTOLINI, M. C. ; GONZALEZ-JOSE, R.. FGFR1 signaling is associated with the magnitude of morphological integration in human head shape. American Journal of Human Biology. v. 00, p. 000-000, 2013. Qualis: A1
47.	IONESCU, M. ; BACCARI, C. ; DASILVA, A.M. ; Garcia A ; YOKOTA, K. ; Lindow, S.E.. Diffusible Signal Factor (DSF) Synthase RpfF of Xylella fastidiosa Is a Multifunction Protein Also Required for Response to DSF. JOURNAL OF BACTERIOLOGY. v. 195, p. 5273-5284, 2013. Qualis: A3
48.	JALAN, NEHA ; KUMAR, DIBYENDU ; ANDRADE, MAXUEL O ; YU, FAHONG ; Jones, Jeffrey B ; GRAHAM, JAMES H ; White, Frank F ; Setubal, João C ; WANG, NIAN. Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range. BMC Genomics. v. 14, p. 551, 2013. Qualis: A2
49.	JORDAO, F. M. ; GABRIEL, H. B. ; Alves, João MP ; ANGELI, C. B. ; BIFANO, T. D. ; Breda, A. ; AZEVEDO, M. F. ; BASSO, L. A. ; Wunderlich, G. ; KIMURA, E. A. ; KATZIN, A. M.. Cloning and characterization of bifunctional enzyme farnesyl diphosphate/geranylgeranyl diphosphate synthase from Plasmodium falciparum. Malaria Journal (Online). v. 12, p. 184, 2013. Qualis: A1
50.	KASHIWABARA, ANDRÉ YOSHIAKI ; BONADIO, ÍGOR ; ONUCHIC, VITOR ; AMADO, FELIPE ; MATHIAS, RAFAEL ; Durham, Alan Mitchell. ToPS: A Framework to Manipulate Probabilistic Models of Sequence Data. PLOS Computational Biology (Online). v. 9, p. e1003234, 2013. Qualis: A1
51.	KLEIN, C. C. ; ALVES, J. M. P. ; SERRANO, M. G. ; BUCK, G. A. ; VASCONCELOS, A. T. R. ; SAGOT, M.-F. ; Teixeira, M. M. G. ; Camargo, Erney P. ; MOTTA, M. C. M.. Biosynthesis of Vitamins and Cofactors in Bacterium-Harbouring Trypanosomatids Depends on the Symbiotic Association as Revealed by Genomic Analyses. Plos One. v. 8, p. e79786, 2013. Qualis: A1
52.	KOBAYASHI, GERSON SHIGERU ; ALVIZI, LUCAS ; SUNAGA, DANIELE YUMI ; FRANCIS-WEST, PHILIPPA ; KUTA, ANNA ; ALMADA, BRUNO VINÍCIUS PIMENTA ; FERREIRA, SIMONE GOMES ; DE ANDRADE-LIMA, LEONARDO CARMO ; BUENO, DANIELA FRANCO ; RAPOSO-AMARAL, CÁSSIO EDUARDO ; Menck, Carlos Frederico ; PASSOS-BUENO, MARIA RITA. Susceptibility to DNA Damage as a Molecular Mechanism for Non-Syndromic Cleft Lip and Palate. Plos One. v. 8, p. e65677, 2013. Qualis: A1
53.	LAZARINI, MARIANA ; Traina, Fabiola ; MACHADO-NETO, JOÃO A. ; BARCELLOS, KARIN S.A. ; Moreira, Yuri B. ; BRANDÃO, MARCELO M. ; Verjovski-Almeida, Sergio ; RIDLEY, ANNE J. ; SAAD, SARA T. OLALLA. ARHGAP21 is a RhoGAP for RhoA and RhoC with a role in proliferation and migration of prostate adenocarcinoma cells. Biochimica et Biophysica Acta. Molecular Basis of Disease. v. 1832, p. 365-374, 2013. Qualis: Não identificado (MOLECULAR BASIS OF DISEASE)
54.	Lembke, Carolina G. ; Nishiyama, Milton Y ; FERREIRA, SAVIO SIQUEIRA ; Dal-Bianco, Maximiller ; Sato, Paloma M. ; Hotta, Carlos T. ; CARNEIRO, M. S. ; LOUREIRO, M. E. ; CARRER, H. ; ENDRES, L. ; Hoffmann, Hermann Paulo ; SANCHES, M. ; Menossi, Marcelo ; SOUZA, G. M.. Sugarcane genome sequencing and gene discovery: getting closer to sugar content, fibre and drought traits.. International Sugar Journal. v. 115 (1378), p. 708-713, 2013.Qualis: Não identificado (INTERNATIONAL SUGAR JOURNAL)
55.	LEUTNER, SILKE ; Oliveira, Katia C. ; ROTTER, BJÖRN ; BECKMANN, SVENJA ; BURO, CHRISTIN ; HAHNEL, STEFFEN ; KITAJIMA, JOAO P. ; Verjovski-Almeida, Sergio ; WINTER, PETER ; GREVELDING, CHRISTOPH G.. Combinatory Microarray and SuperSAGE Analyses Identify Pairing-Dependently Transcribed Genes in Schistosoma mansoni Males, Including Follistatin. PLoS Neglected Tropical Diseases (Online). v. 7, p. e2532, 2013. Qualis: A1
56.	Li, Shuzhao ; Nakaya, Helder I. ; KAZMIN, DMITRI A. ; OH, JASON Z. ; Pulendran, Bali. Systems biological approaches to measure and understand vaccine immunity in humans. Seminars in Immunology. v. press, p. press, 2013. Qualis: A1
57.	Li, Shuzhao ; Rouphael, Nadine ; DURAISINGHAM, SAI ; ROMERO-STEINER, SANDRA ; PRESNELL, SCOTT ; DAVIS, CARL ; SCHMIDT, DANIEL S ; JOHNSON, SCOTT E ; MILTON, ANDREA ; RAJAM, GOWRISANKAR ; KASTURI, SUDHIR ; CARLONE, GEORGE M ; QUINN, CHARLIE ; CHAUSSABEL, DAMIEN ; PALUCKA, A KAROLINA ; MULLIGAN, MARK J ; Ahmed, Rafi ; STEPHENS, DAVID S ; Nakaya, Helder I ; Pulendran, Bali ; et.al. Molecular signatures of antibody responses derived from a systems biology study of five human vaccines. Nature Immunology (Print). v. x, p. 1, 2013. Qualis: A1
58.	LIMA, V. C. C. ; CARVALHO, A. F. ; MORATO-MARQUES, M. ; HASHIMOTO, V. L. ; SPILBORGHS, G. M. G. T. ; MARQUES, S. M. ; LANDMAN, G. ; Torres, Cesar ; RIBEIRO, K. B. ; Brentani, H ; REIS, L. F. L. ; DIAS, A. A. M.. TNF-alpha and melphalan modulate a specific group of early expressed genes in a murine melanoma model. Cytokine. v. 62, p. 217-225, 2013.Qualis: A2
59.	LOCOSSELLI, GIULIANO MASELLI ; BUCKERIDGE, M. S. ; Moreira, Marcelo Zacharias ; CECCANTINI, G. C. T.. A multi-proxy dendroecological analysis of two tropical species (Hymenaea spp., Leguminosae) growing in a vegetation mosaic. Trees (Berlin. Print). v. 27, p. 25-36, 2013. Qualis: Não identificado (PRINT))
60.	LONG, MANYUAN ; VANKUREN, NICHOLAS W. ; CHEN, SIDI ; VIBRANOVSKI, MARIA D.. New Gene Evolution: Little Did We Know. Annual Review of Genetics (Print). v. 47, p. 307-333, 2013. Qualis: Não identificado (ANNUAL REVIEW OF GENETICS)
61.	MARIA BERRA, CAROLINA ; DE OLIVEIRA, CARLA SANTOS ; MACHADO GARCIA, CAMILA CARRIÃO ; REILY ROCHA, CLARISSA RIBEIRO ; KOCH LERNER, LETÍCIA ; DE ANDRADE LIMA, LEONARDO CARMO ; DA SILVA BAPTISTA, MAURÍCIO ; Martins Menck, Carlos Frederico. Nucleotide excision repair activity on DNA damage induced by photoactivated methylene blue. Free Radical Biology & Medicine. v. 61, p. 343-356, 2013. Qualis: A1
62.	MARTINS, D. C. ; OLIVEIRA, E. A. ; BRAGA-NETO, U. ; HASHIMOTO, R. F. ; CESAR JUNIOR, R. M.. Signal Propagation in Bayesian Networks and its Relationship with Intrinsically Multivariate Predictive Variables. Information Sciences. v. 225, p. 18-34, 2013. Qualis: A1
63.	MARTINS, L. F. ; ANTUNES, L. P. ; PASCON, R. ; OLIVEIRA, Julio Cezar de ; DIGIAMPIETRI, Luciano A. ; BARBOSA, D. ; PEIXOTO, B. M. ; VALLIM, M. A. ; VIANA-NIERO, C. ; Ostroski, Eric H ; TELLES, G. ; DIAS, Z. ; CRUZ, J. B. ; JULIANO NETO, L. ; VERJOVSKI-ALMEIDA, Sergio ; da Silva, Aline M ; Setubal, J.C.. Metagenomic Analysis of a Tropical Composting Operation at the São Paulo Zoo Park Reveals Diversity of Biomass Degradation Functions and Organisms. Plos One. v. 8, p. e61928, 2013. Qualis: A1
64.	MEDEIROS, DAVID BARBOSA ; SILVA, ELIZAMAR CIRÍACO DA ; NOGUEIRA, REJANE JUREMA MANSUR CUSTÓDIO ; TEIXEIRA, MARCELO MENOSSI ; BUCKERIDGE, MARCOS SILVEIRA. Physiological limitations in two sugarcane varieties under water suppression and after recovering. Theoretical and Experimental Plant Physiology. v. 25, p. 213-222, 2013. Qualis: A4
65.	MONTEIRO-VITORELLO, C.B. ; MONTEIRO-VITORELLO, C. B. ; ZERILLO, M. M. ; ZERILLO, M.M. ; VAN SLUYS, M.A. ; VAN SLUYS, M.-A. ; CAMARGO, L. E. A. ; CAMARGO, L.E.A. ; KITAJIMA, J.P. ; KITAJIMA, J. P.. Complete Genome Sequence of Leifsonia xyli subsp. cynodontis Strain DSM46306, a Gram-Positive Bacterial Pathogen of Grasses. Genome Announcements. v. 1, p. e00915-13-e00915-13, 2013. Qualis: B3
66.	NETO, RENATA L. ; MARQUES, LUCAS. M. ; GUIMARÃES, ANA MÁRCIA S. ; YAMAGUTI, MAURICIO ; OLIVEIRA, ROSANGELA C. ; GAETTI-JARDIM JR, ELERSON ; MEDINA, AZIZ O. ; SANFILIPPO, LUIS F. ; Timenetsky, Jorge. Frequency of Different Human Mollicutes Species in the Mucosa of the Oropharynx, Conjunctiva, and Genitalia of Free-Ranging and Captive Capuchin Monkeys ( spp.). American Journal of Primatology (Print). v. 76, p. n/a-n/a, 2013. Qualis: A1
67.	NICOLAU-JUNIOR, NILSON ; Giuliatti, Silvana. Modeling and molecular dynamics of the intrinsically disordered e7 proteins from high- and low-risk types of human papillomavirus. Journal of Molecular Modeling (Print). v. 19, p. 4025-4037, 2013. Qualis: A4
68.	NORRIS, BRIAN A. ; UEBELHOER, LUKE S. ; NAKAYA, HELDER I. ; PRICE, ARYN A. ; GRAKOUI, ARASH ; Pulendran, Bali. Chronic but Not Acute Virus Infection Induces Sustained Expansion of Myeloid Suppressor Cell Numbers that Inhibit Viral-Specific T Cell Immunity. Immunity (Cambridge, Mass.). v. 38, p. 309-321, 2013. Qualis: A1
69.	ORTOLAN, TATIANA GROHMANN ; MENCK, CARLOS FREDERICO M.. UVB-Induced Cell Death Signaling Is Associated with G1-S Progression and Transcription Inhibition in Primary Human Fibroblasts. Plos One. v. 8, p. e76936, 2013. Qualis: A1
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71.	Pulendran, Bali ; OH, JASON Z. ; Nakaya, Helder I. ; Ravindran, Rajesh ; KAZMIN, DMITRI A.. Immunity to viruses: learning from successful human vaccines. Immunological Reviews. v. 255, p. 243-255, 2013. Qualis: C (LIMNOLOGICAL REVIEW)
72.	QUINET, ANNABEL ; VESSONI, ALEXANDRE T. ; ROCHA, CLARISSA R.R. ; GOTTIFREDI, VANESA ; BIARD, DENIS ; Sarasin, Alain ; Menck, Carlos F.M. ; Stary, Anne. Gap-filling and bypass at the replication fork are both active mechanisms for tolerance of low-dose ultraviolet-induced DNA damage in the human genome. DNA Repair (Print). v. 14, p. 27-38, 2013. Qualis: A1
73.	RAJASEKARAN, PARTHIBAN ; ALEXANDER, JEFFRY C. ; SELEEM, MOHAMED N. ; JAIN, NEETA ; SRIRANGANATHAN, NAMMALWAR ; WATTAM, ALICE R. ; Setubal, João C. ; BOYLE, STEPHEN M.. Peptide nucleic acids inhibit growth of Brucella suis in pure culture and in infected murine macrophages. International Journal of Antimicrobial Agents (Print). v. 41, p. 500, 2013. Qualis: A1
74.	RAMALLO, V. ; Bisso-Machado, R ; Bravi, CM ; COBLE, M. D. ; SALZANO, F. M. ; HÜNEMEIER, T. ; BORTOLINI, M. C.. Demographic expansions in South America: Enlightening a complex scenario with genetic and linguistic data. American Journal of Physical Anthropology. v. 00, p. 000-000, 2013. Qualis: A2
75.	RANGEL, L. T. ; Novaes, J. ; DURHAM, A. M. ; MADEIRA, A. M. B. N. ; GRUBER, A.. The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria. DATABASE-OXFORD. v. 2013, p. bat006-bat006, 2013. Qualis: Não identificado (DATABASE-OXFORD)
76.	Ravindran, R. ; KHAN, N. ; NAKAYA, H. I. ; LI, S. ; LOEBBERMANN, J. ; MADDUR, M. S. ; PARK, Y. ; JONES, D. P. ; CHAPPERT, P. ; DAVOUST, J. ; WEISS, D. S. ; VIRGIN, H. W. ; RON, D. ; Pulendran, B.. Vaccine Activation of the Nutrient Sensor GCN2 in Dendritic Cells Enhances Antigen Presentation. Science (New York, N.Y.). v. press, p. press, 2013. Qualis: A1
77.	RIDLON, J. M. ; Alves, João M. ; HYLEMON, P. B. ; BAJAJ, J. S.. Cirrhosis, bile acids and gut microbiota: Unraveling a complex relationship. Gut Microbes. v. 4, p. 1-6, 2013. Qualis: A1
78.	RIDLON, J. M. ; IKEGAWA, S. ; Alves, João MP ; Zhou, B. ; Kobayashi, A. ; Iida, T. ; Mitamura, K. ; Tanabe, G. ; Serrano, Myrna G. ; De Guzman, A. ; Takamine, F. ; BUCK, G. A. ; HYLEMON, P. B.. Clostridium scindens: a human gut microbe with a high potential to convert glucocorticoids into androgens. Journal of Lipid Research (Print),. p. 1, 2013. Qualis: A2 (JOURNAL OF LIPID RESEARCH)
79.	ROCHA, CLARISSA RIBEIRO REILY ; LERNER, LETICIA KOCH ; OKAMOTO, OSWALDO KEITH ; MARCHETTO, MARIA CAROLINA ; Menck, Carlos Frederico Martins. The role of DNA repair in the pluripotency and differentiation of human stem cells. Mutation Research. Reviews in Mutation Research (Print). v. 752, p. 25-35, 2013. Qualis: Não identificado (REVIEWS IN MUTATION RESEARCH)
80.	RODRIGUES, M.G.F. ; MARTINS, A.B.G. ; BERTONI, B.W. ; FIGUEIRA, A. ; GIULIATTI, S.. Search for methylation-sensitive amplification polymorphisms in mutant figs. Genetics and Molecular Research. v. 12, p. 2267-2280, 2013. Qualis: B3
81.	ROFATTO, HENRIQUE K. ; ARAUJO-MONTOYA, BOGAR O. ; MIYASATO, PATRÍCIA A. ; LEVANO-GARCIA, JULIO ; RODRIGUEZ, DUNIA ; NAKANO, ELIANA ; Verjovski-Almeida, Sergio ; Farias, Leonardo P. ; LEITE, LUCIANA C.C.. Immunization with tegument nucleotidases associated with a subcurative praziquantel treatment reduces worm burden following Schistosoma mansoni challenge. PeerJ. v. 1, p. e58, 2013. Qualis: A2
82.	SATO, João Ricardo ; TAKAHASHI, DANIEL YASUMASA ; Hoexter, Marcelo Queiroz ; MASSIRER, Katlin Brauer ; Fujita, André. Measuring network's entropy in ADHD: A new approach to investigate neuropsychiatric disorders. Neuroimage (Orlando, Fla. Print). v. 77, p. 44-51, 2013. Qualis: Não identificado (PRINT))
83.	SAYED, A. ; GHAZY, M. A. ; Ferreira, A. J. S. ; SETUBAL, J. C. ; CHAMBERGO, F. S. ; OUF, A. ; ADEL, M. ; DAWE, A. S. ; ARCHER, J. A. C. ; BAJIC, V. B. ; SIAM, R. ; El-Dorry, H.. A novel mercuric reductase from the unique deep brine environment of Atlantis II in the Red Sea. The Journal of Biological Chemistry (Print). v. 289, p. 1675-1687, 2013. Qualis: A1
84.	SCHUCH, A.P. ; GARCIA, CAMILA CARRIÃO MACHADO ; Makita, Kazuo ; MENCK CF. DNA damage as a biological sensor for environmental sunlight. Photochemical & Photobiological Sciences. v. 12, p. 1259-1272, 2013. Qualis: A3
85.	SEVERINO, PATRICIA ; OLIVEIRA, LILIANE ; TORRES, NATALIA ; ANDREGHETTO, FLAVIA ; DE FATIMA GUARIZO KLINGBEIL, MARIA ; MOYSES, RAQUEL ; WÜNSCH-FILHO, VICTOR ; NUNES, FABIO ; MATHOR, MONICA ; PASCHOAL, ALEXANDRE ; DURHAM, ALAN. High-throughput sequencing of small RNA transcriptomes reveals critical biological features targeted by microRNAs in cell models used for squamous cell cancer research. BMC Genomics. v. 14, p. 735, 2013. Qualis: A2
86.	Souza, Amanda P. ; GRANDIS, ADRIANA ; LEITE, DÉBORA C. C. ; Buckeridge, Marcos S.. Sugarcane as a Bioenergy Source: History, Performance, and Perspectives for Second-Generation Bioethanol. BioEnergy Research. v. 7, p. 24-35, 2013. Qualis: A1
87.	Takecian, Pedro L. ; OIKAWA, MARCIO K. ; BRAGHETTO, KELLY R. ; ROCHA, PAULO ; LUCENA, FRED ; KAVOUNIS, KATHERINE ; SCHLUMPF, KAREN S. ; ACKER, SUSAN ; CARNEIRO-PROIETTI, ANNA B.F. ; Sabino, Ester C. ; Custer, Brian ; Busch, Michael P. ; Ferreira, João E.. Methodological guidelines for reducing the complexity of data warehouse development for transactional blood bank systems. Decision Support Systems. v. 55, p. 728-739, 2013. Qualis: A1
88.	TAN, YAN ; TAMAYO, PABLO ; NAKAYA, HELDER ; Pulendran, Bali ; MESIROV, JILL P. ; HAINING, W. NICHOLAS. Gene signatures related to B-cell proliferation predict influenza vaccine-induced antibody response. European Journal of Immunology. v. press, p. n/a-n/a, 2013. Qualis: A2
89.	TEIXEIRA, F. R. ; MANFIOLLI, A. O. ; SOARES, C. S. ; BAQUI, M. M. A. ; KOIDE, T. ; Gomes, M. D.. The F-box Protein FBXO25 Promotes the Proteasome-dependent Degradation of ELK-1 Protein. Journal of Biological Chemistry (Online). v. 288, p. 28152-28162, 2013. Qualis: A1
90.	TURRA, ALEXANDER ; CRÓQUER, ALDO ; CARRANZA, ALVAR ; MANSILLA, ANDRÉS ; ARECES, ARSENIO J. ; WERLINGER, CAMILO ; MARTÍNEZ-BAYÓN, CARLOS ; NASSAR, CRISTINA APARECIDA GOMES ; PLASTINO, ESTELA ; SCHWINDT, EVANGELINA ; SCARABINO, FABRIZIO ; CHOW, FUNGYI ; FIGUEROA, FELIX LOPES ; BERCHEZ, FLÁVIO ; HALL-SPENCER, JASON M. ; SOTO, LUIS A. ; BUCKERIDGE, MARCOS SILVEIRA ; COPERTINO, MARGARETH S. ; DE SZÉCHY, MARIA TEREZA MENEZES ; GHILARDI-LOPES, NATALIA PIRANI ; et.al. Global environmental changes: setting priorities for Latin American coastal habitats. Global Change Biology (Print). v. online, p. n/a-n/a, 2013. Qualis: A1
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92.	Vernhes, M. ; GONZÁLEZ-PUMARIEGA, MARIBEL ; SCHUCH, A. P. ; MENCK CF ; SÁNCHEZ-LAMAR, ANGEL. El extracto acuoso de Phyllanthus orbiculares K protege al ADN plasmídico del daño inducido por las radiaciones ultravioletas. Ars Pharmaceutica. v. 54, p. 16-23, 2013.Qualis: Não identificado (ARS PHARMACEUTICA)
93.	VERNHES, MARIOLY ; GONZÁLEZ-PUMARIEGA, MARIBEL ; ANDRADE, LUCIANA ; SCHUCH, ANDRE PASSAGLIA ; de Lima-Bessa, Keronninn Moreno ; MENCK CF ; SÁNCHEZ-LAMAR, ANGEL. Protective effect of a Phyllanthus orbicularis aqueous extract against UVB light in human cells. Pharmaceutical Biology (Online). v. 51, p. 1-7, 2013. Qualis: A4
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96.	WULFF, NELSON ARNO ; ZHANG, SHUJIAN ; Setubal, João C ; Almeida, Nalvo F ; MARTINS, ELAINE C ; Harakava, Ricardo ; KUMAR, DIBYENDU ; RANGEL, LUIZ T ; FOISSAC, XAVIER ; BOVE, JOSEPH ; GABRIEL, DEAN W. The complete genome sequence of Candidatus Liberibacter americanus, associated with citrus Huanglongbing.. Molecular Plant-Microbe Interactions. v. 27, p. 131107142521009, 2013. Qualis: A1

2012

1.	Agnez-Lima, Lucymara F. ; Melo, Julliane T.A. ; Silva, Acarízia E. ; Oliveira, Ana Helena S. ; Timoteo, Ana Rafaela S. ; Lima-Bessa, Keronninn M. ; Martinez, Glaucia R. ; Medeiros, Marisa H.G. ; Di Mascio, Paolo ; Galhardo, Rodrigo S. ; Menck, Carlos F.M.. DNA damage by singlet oxygen and cellular protective mechanisms. Mutation Research. Reviews in Mutation Research (Print). v. 751, p. 15-28, 2012. Qualis: Não identificado (REVIEWS IN MUTATION RESEARCH)
2.	ALMEIDA, CESAR C. ; BRENTANI, HELENA P. ; FORLENZA, ORESTES V. ; DINIZ, BRENO S.. Redução dos níveis séricos de ácido fólico em pacientes com a doença de Alzheimer. Revista de Psiquiatria Clínica (São Paulo. Impresso). v. 39, p. 90-93, 2012. Qualis: Não identificado (IMPRESSO))
3.	Almeida, Giulliana Tessarin ; Amaral, Murilo Sena ; Beckedorff, Felipe Cesar Ferrarezi ; Kitajima, João Paulo ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio. Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq. Experimental Parasitology. v. 132, p. 22-31, 2012. Qualis: A4
4.	AMARAL, LOURDES ISABEL VELHO DO ; SANTOS, HENRIQUE P. ; ROSSATTO, DAVI RODRIGO ; BUCKERIDGE, MARCOS SILVEIRA. Diurnal changes in storage carbohydrate metabolism in cotyledons of the tropical tree Hymenaea courbaril L. (Leguminosae). Brazilian Journal of Botany. v. 35, p. 347-355, 2012. Qualis: B1
5.	Anderson, Letícia ; Pierce, Raymond J. ; Verjovski-Almeida, Sergio. Schistosoma mansoni histones: From transcription to chromatin regulation; an in silico analysis. Molecular and Biochemical Parasitology (Print). v. 183, p. 105-114, 2012. Qualis: A4
6.	Andrade, L. N. d. S. ; Nathanson, J. L. ; Yeo, G. W. ; Menck, C. F. M. ; MUOTRI, A. R.. Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome. Human Molecular Genetics (Print). v. 21, p. 3825-3834, 2012. Qualis: A1
7.	Aravind, L. ; Anantharaman, Vivek ; ZHANG, DAPENG ; De Souza, Robson F. ; Iyer, Lakshminarayan M.. Gene flow and biological conflict systems in the origin and evolution of eukaryotes. Frontiers in Cellular and Infection Microbiology. v. 2, p. 2235-2988, 2012. Qualis: A1
8.	BEGCY, KEVIN ; MARIANO, EDUARDO D. ; GENTILE, AGUSTINA ; Lembke, Carolina G. ; ZINGARETTI, SONIA MARLI ; Souza, Glaucia M. ; Menossi, Marcelo. A Novel Stress-Induced Sugarcane Gene Confers Tolerance to Drought, Salt and Oxidative Stress in Transgenic Tobacco Plants. Plos One. v. 7, p. e44697, 2012. Qualis: A1
9.	Bragatto, Juliano ; Segato, Fernando ; Cota, Junio ; Mello, Danilo B. ; Oliveira, Marcelo M. ; Buckeridge, Marcos S. ; Squina, Fabio M. ; Driemeier, Carlos ; BUCKERIDGE, M. S.. Insights on How the Activity of an Endoglucanase Is Affected by Physical Properties of Insoluble Celluloses. Journal of Physical Chemistry. B. v. 116, p. 6128-6136, 2012. Qualis: Não identificado (B)
10.	BRAGHETTO, K. R. ; FERREIRA, J. E. ; VINCENT, J.. Performance evaluation of resource-aware business processes using stochastic automata networks. INTERNATIONAL JOURNAL OF INNOVATIVE COMPUTING, INFORMATION & CONTROL. v. v.8, p. 5295-5316, 2012.Qualis: A4
11.	BUCKERIDGE, MARCOS S.; Braga, Marcia R.. Sonia Dietrich: a life dedicated to science. Brazilian Journal of Botany. v. 35, p. 00-00, 2012. Qualis: B1
12.	Buckeridge, Marcos S.; Souza, Amanda P. ; Arundale, Rebecca A. ; Anderson-Teixeira, Kristina J. ; DeLucia, Evan. Ethanol from sugarcane in Brazil: a `midway¿ strategy for increasing ethanol production while maximizing environmental benefits. GCB BIOENERGY. v. 4, p. 119-126, 2012. Qualis: Não identificado (GCB BIOENERGY)
13.	Campbell, Desmond D. ; Parra, Maria V. ; Duque, Constanza ; Gallego, Natalia ; Franco, Liliana ; Tandon, Arti ; Hünemeier, Tábita ; Bortolini, Cátira ; Villegas, Alberto ; Bedoya, Gabriel ; McCarthy, Mark I. ; Price, Alkes ; Reich, David ; Ruiz-Linares, Andrés. Amerind Ancestry, Socioeconomic Status and the Genetics of Type 2 Diabetes in a Colombian Population. Plos One. v. 7, p. e33570, 2012. Qualis: A1
14.	Campos, Antonio Hugo Jose Froes Marques ; Brentani, Helena ; Olivieri, Eloisa Ribeiro ; Carraro, Dirce Maria ; Patrão, Diogo ; Mota, Louise Danielle De Carvalho ; Brentani, Ricardo Renzo ; Soares, Fernando Augusto ; Camargo, Luiz Paulo ; Prescinoti, Vera Cristina ; Silva, Andre Abreu. The Value of a Tumor Bank in the Development of Cancer Research in Brazil: 13 Years of Experience at the A C Camargo Hospital. Biopreservation and Biobanking. v. 10, p. 168-173, 2012. Qualis: A4
15.	Cappi, Carolina ; Muniz, Renan Kawano ; Sampaio, Aline Santos ; Cordeiro, Quirino ; BRENTANI, H. ; Palácios, Selma A. ; Marques, Andrea H. ; Vallada, Homero ; Miguel, Eurípedes Constantino ; Guilherme, Luiza ; Hounie, Ana Gabriela. Association study between functional polymorphisms in the TNF-alpha gene and obsessive-compulsive disorder. Arquivos de Neuro-Psiquiatria (Impresso). v. 70, p. 87-90, 2012. Qualis: B2
16.	Cerqueira, Caio C S ; Paixão-Côrtes, Vanessa R ; Zambra, Francis M B ; Salzano, Francisco M ; Hünemeier, Tábita ; Bortolini, Maria-Cátira. Predicting homo pigmentation phenotype through genomic data: From neanderthal to James Watson. American Journal of Human Biology,. p. n/a-n/a, 2012. Qualis: A1 (AMERICAN JOURNAL OF HUMAN BIOLOGY)
17.	Chen S. ; Ni X. ; KRINSKY, B.H. ; ZHANG, Y. ; VIBRANOVSKI, M. D. ; White K.P. ; LONG, M.. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO Journal (Print). v. 31, p. 2798-2809, 2012. Qualis: A1
18.	Damásio, André R.L. ; Ribeiro, Liliane F.C. ; Ribeiro, Lucas F. ; Furtado, Gilvan P. ; Segato, Fernando ; Almeida, Fausto B.R. ; Crivellari, Augusto C. ; BUCKERIDGE, M. S. ; Souza, Tatiana A.C.B. ; Murakami, Mário T. ; Ward, Richard J. ; Prade, Rolf A. ; Polizeli, Maria L.T.M.. Functional characterization and oligomerization of a recombinant xyloglucan-specific endo-ß-1,4-glucanase (GH12) from Aspergillus niveus. Biochimica et Biophysica Acta. Proteins and Proteomics. v. 1824, p. 461-467, 2012. Qualis: Não identificado (PROTEINS AND PROTEOMICS)
19.	de Mendonça, Patrícia Calligioni ; Bertoni, Bianca Waléria ; Amui, Saulo França ; Giuliatti, Silvana ; Corrêa, Valéria Sieiro Conde ; França, Suzelei de Castro ; Pereira, Ana Maria Soares. Genetic diversity of Stryphnodendron adstringens (Mart.) Coville determined by AFLP molecular markers. Biochemical Systematics and Ecology. v. 41, p. 16-20, 2012. Qualis: B1
20.	de SOUZA, Robson Francisco; Aravind, L.. Identification of novel components of NAD-utilizing metabolic pathways and prediction of their biochemical functions. Molecular Biosystems (Print). v. 8, p. 1661, 2012. Qualis: A3
21.	Dias, Zanoni ; Dias, Ulisses ; Setubal, Joao C. SIS: a program to generate draft genome sequence scaffolds for prokaryotes. BMC Bioinformatics. v. 13, p. 96, 2012. Qualis: A1
22.	do Nascimento, N. C. ; GUIMARAES, A. M. S. ; Santos, A. P. ; SanMiguel, P. J. ; MESSICK, J. B.. Complete Genome Sequence of Mycoplasma haemocanis Strain Illinois. Journal of Bacteriology (Print). v. 194, p. 1605-1606, 2012. Qualis: A3
23.	do Nascimento, Naila C ; Santos, Andrea P ; Guimaraes, Ana MS ; SanMiguel, Phillip J ; Messick, Joanne B. Mycoplasma haemocanis -- the canine hemoplasma and its feline counterpart in the genomic era. Veterinary Research. v. 43, p. 66, 2012. Qualis: A1
24.	Domingues, Douglas S ; Cruz, Guilherme MQ ; Metcalfe, Cushla J ; Nogueira, Fabio TS ; Vicentini, Renato ; de S Alves, Cristiane ; Van Sluys, Marie-Anne. Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns. BMC GENOMICS. v. 13, p. 137, 2012. Qualis: A2
25.	Dos Santos, Patricia C ; Fang, Zhong ; Mason, Steven W ; Setubal, João C ; Dixon, Ray. Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. BMC Genomics. v. 13, p. 162, 2012. Qualis: A2
26.	dos Santos, W.D ; LOPES, A. F. ; BARONI, A. M. ; ALCÂNTARA, P. H. N. ; BUCKERIDGE, M. S.. Penicilium citrinum polysaccharidases. Journal of Agronomical Sciences. v. 1, p. 139-152, 2012.Qualis: C (JOURNAL OF AGRONOMIC SCIENCES)
27.	DRIEMEIER, C. ; Santos, Wanderley D. ; BUCKERIDGE, M. S.. Cellulose crystals in fibrovascular bundles of sugarcane culms: orientation, size, distortion, and variability. Cellulose (London). v. 19, p. 1-1508, 2012. Qualis: A1
28.	FERREIRA, J. E.; ARAUJO, L. V. ; BRAGHETTO, K. R. ; ITALIANO, I. C. ; OIKAWA, M. K. ; Takecian, P. L.. Long Lived Transaction Processing for Business Processes and Scientific Workflows. Journal of Information and Data Management - JIDM. v. 3, p. 33-50, 2012.Qualis: B3
29.	Fettweis, J.M. ; SERRANO, M. G. ; Nihar Sheth ; Carly Mayer ; Abigail L. Glascock ; Brooks, J.P. ; Jefferson, Kimberly K ; Alves, João M. P. ; Vaginal Microbiome Consortium ; BUCK, G. A.. Species-level classification of the vaginal microbiome. BMC Genomics. v. 13, p. S17, 2012.Qualis: A2
30.	FUJITA, A; SEVERINO, P. ; Kojima K ; SATO, João Ricardo ; PATRIOTA, A. G. ; Miyano, Satoru. Functional clustering of time series gene expression data by Granger causality. BMC Systems Biology. v. 6, p. 137, 2012. Qualis: A1
31.	GARCIA, M. O. ; BRAGHETTO, K. R. ; PU, C. ; FERREIRA, J. E.. An Implementation of a Transaction Model for Business Process Systems. Journal of Information and Data Management - JIDM. v. 3, p. 271, 2012.Qualis: B3
32.	GOMEZ-VALDES, J. ; HÜNEMEIER, T. ; Contini V ; ACUNA-ALONZO, V. ; MACIN, G. ; Ballesteros, M ; CORRAL-MONTANES, P. ; RUIZ-LINARES, A ; SANCHEZ-MEJORADA, G. ; CANIZALES-QUINTEROS, S. ; MARTINEZ-ABADIAS, N. ; SALZANO, F. M. ; GONZALEZ-JOSE, R. ; BORTOLINI, M. C.. Fibroblast growth factor receptor 1 ( FGFR1 ) variants and craniofacial variation in Amerindians and related populations. American Journal of Human Biology. v. 1, p. n/a-n/a, 2012. Qualis: A1
33.	Goncalez, Thelma T. ; Sabino, Ester C. ; Capuani, Ligia ; Liu, Jing ; Wright, David J. ; Walsh, Judy H. ; FERREIRA, JOAO E. ; Chamone, Dalton A. ; Busch, Michael P. ; Custer, Brian. Blood transfusion utilization and recipient survival at Hospital das Clinicas in São Paulo, Brazil. Transfusion (Arlington, Va.). v. 52, p. 729-738, 2012. Qualis: A3
34.	GUIMARAES, A. M. S.; Toth, B. ; Santos, A. P. ; do Nascimento, N. C. ; KRITCHEVSKY, J. E. ; MESSICK, J. B.. Genome Sequence of 'Candidatus Mycoplasma haemolamae' Strain Purdue, a Red Blood Cell Pathogen of Alpacas (Vicugna pacos) and Llamas (Lama glama). Journal of Bacteriology (Print). v. 194, p. 6312-6313, 2012. Qualis: A3
35.	Harwich, Michael D ; Serrano, Myrna G. ; Fettweis, J.M. ; Alves, João M. P. ; Mark A. Reimers ; Vaginal Microbiome Consortium ; Buck, Gregory A ; Jefferson, Kimberly K. Genomic sequence analysis and characterization of Sneathia amnii sp. nov. BMC Genomics. v. 13, p. S4, 2012. Qualis: A2
36.	HORIMOTO, ANDRÉA RVR ; OLIVEIRA, CAMILA M ; GIOLO, SUELY R ; SOLER, JÚLIA P ; DE ANDRADE, MARIZA ; KRIEGER, JOSÉ E ; PEREIRA, ALEXANDRE C. Genetic analyses of smoking initiation, persistence, quantity, and age-at-onset of regular cigarette use in Brazilian families: the Baependi Heart Study. BMC Medical Genetics (Online). v. 13, p. 9, 2012. Qualis: A4
37.	HÜNEMEIER, T.; Amorim, CEG ; AZEVEDO, S. ; Contini V ; Rothhammer F ; Dugoujon JM ; Mazières S ; BARRANTES, R. ; Villarreal-Molina MT ; PAIXAO-CORTES, V. R. ; SALZANO, F. M. ; CANIZALES-QUINTEROS, S. ; RUIZ-LINARES, A ; BORTOLINI, M. C.. Evolutionary Responses to a Constructed Niche: Ancient Mesoamericans as a Model of Gene-Culture Coevolution. Plos One. v. 7, p. e38862-e38862, 2012. Qualis: A1
38.	HÜNEMEIER, T.; GOMEZ-VALDES, J. ; Ballesteros, M ; AZEVEDO, S. ; MARTINEZ-ABADIAS, N. ; Esparza, M ; SJOVOLD, T. ; BONATTO, S. L. ; SALZANO, F. M. ; BORTOLINI, M. C. ; GONZALEZ-JOSE, R.. Cultural diversification promotes rapid phenotypic evolution in Xavante Indians. Proceedings of the National Academy of Sciences of the United States of America. v. 109, p. 73-77, 2012. Qualis: A1
39.	Jesus, Erika M. ; Ochoa Cruz, Edgar A. ; Cruz, Guilherme M. Q. ; Van Sluys, Marie-Anne. Diversification of hAT transposase paralogues in the sugarcane genome. MOLECULAR GENETICS AND GENOMICS. v. 287, p. 205-219, 2012. Qualis: A4
40.	JOLY, C. A. ; BERLINCK, R. G. S. ; BOLZANI, V. S. ; HADDAD, C. F. B. ; OLIVEIRA, M. C. ; VAN SLUYS, MARIE-ANNE ; SOUZA, G. M. ; VERDADE, L. M. ; VICTORIA, R. L.. Principais conclusões do workshop conjunto dos programas FAPESP BIOTA-BIOEN-Mudanças Climáticas: ciência e políticas públicas para uma economia mais verde, no contexto da RIO+20. Biota Neotropica. v. 12(2), p. 19-21, 2012. Qualis: B1
41.	Jones, Crystal L. ; Sampson, Timothy R. ; Nakaya, Helder I. ; Pulendran, Bali ; Weiss, David S.. Repression of Bacterial Lipoprotein Production by F. novicida Facilitates Evasion of Innate Immune Recognition. Cellular Microbiology (Print). v. 15, p. n/a-n/a, 2012. Qualis: A2
42.	KAJIHARA, D. ; Godoy F ; Hamaji TA ; BLANCO, S. R. ; VANSLUYS, M A ; SLUYS MAV. ; ROSSI, M.. Functional characterization of sugarcane mustang domesticated transposases and comparative diversity in sugarcane, rice, maize and sorghum. Genetics and Molecular Biology (Impresso). v. 35, p. 632-639, 2012.Qualis: A4
43.	KOJIMA, KANAME ; Imoto, Seiya ; Yamaguchi, Rui ; Fujita, André ; Yamauchi, Mai ; Gotoh, Noriko ; Miyano, Satoru. Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing. BMC Genomics. v. 13, p. S6, 2012. Qualis: A2
44.	Krepischi, Ana C V ; Achatz, Maria Isabel W ; Santos, Erika M M ; Costa, Silvia S ; Lisboa, Bianca C G ; Brentani, Helena ; Santos, Tiago M ; Goncalves, Amanda ; Nobrega, Amanda F ; Pearson, Peter L ; Vianna-Morgante, Angela M ; Carraro, Dirce M ; Brentani, Ricardo R ; Rosenberg, Carla. Germline DNA copy number variation in familial and early-onset breast cancer. Breast Cancer Research (Print). v. 14, p. R24, 2012. Qualis: A1
45.	Kwissa, M. ; NAKAYA, H. I. ; Oluoch, H. ; Pulendran, B.. Distinct TLR adjuvants differentially stimulate systemic and local innate immune responses in non-human primates. Blood (Philadelphia, PA). v. 119, p. n/a, 2012. Qualis: A1
46.	Lembke, Carolina G. ; Nishiyama, Milton Y ; Sato, Paloma M. ; SOUZA, G. M.. Identification of sense and antisense transcripts regulated by drought in sugarcane. Plant Molecular Biology. v. 79(4-5, p. 461-477, 2012. Qualis: A1
47.	LIMA, L. A. ; RIS, M. ; BARRERA, J. ; BRENTANI, M. M. ; Brentani, Helena. Computing a predictor set influence zone through a multi-laser genetic network to explore the role of estrogen in breast cance. Advances in Breast Cancer Research. v. 1, p. 29-29, 2012.Qualis: Não identificado (ADVANCES IN BREAST CANCER RESEARCH)
48.	Lima, Luciana ; Ortiz, Paola A. ; da Silva, Flávia Maia ; Alves, João Marcelo P. ; Serrano, Myrna G. ; Cortez, Alane P. ; Alfieri, Silvia C. ; Buck, Gregory A. ; Teixeira, Marta M. G.. Repertoire, Genealogy and Genomic Organization of Cruzipain and Homologous Genes in Trypanosoma cruzi, T. cruzi-Like and Other Trypanosome Species. Plos One. v. 7, p. e38385, 2012. Qualis: A1
49.	Manetti, M. E. ; ROSSI, M. ; CRUZ, G. M. Q. ; SACCARO, N. L. ; NAKABASHI, M. ; ALTEBARMAKIAN, V. ; RODIER-GOUD, M. ; DOMINGUES, D. ; D?HONT, A. ; SLUYS, M. A.. Mutator System Derivatives Isolated from Sugarcane Genome Sequence. Tropical Plant Biology. v. 5, p. 233-243, 2012. Qualis: A3
50.	Manque, Patricio A. ; Woehlbier, Ute ; Lara, Ana M. ; Tenjo, Fernando ; Alves, João M. ; Buck, Gregory A.. Identification and Characterization of a Novel Calcium-Activated Apyrase from Cryptosporidium Parasites and Its Potential Role in Pathogenesis. Plos One. v. 7, p. e31030, 2012. Qualis: A1
51.	MARTINS, ALINE REDONDO ; CARMELLO-GUERREIRO, SANDRA MARIA ; BUCKERIDGE, MARCOS SILVEIRA ; SILVA, CLOVIS OLIVEIRA ; APPEZZATO-DA-GLÓRIA, BEATRIZ. Seed ontogeny and endosperm chemical analysis in Smilax polyantha (Smilacaceae). Australian Journal of Botany (Print). v. 60, p. 693-699, 2012. Qualis: A4
52.	MARTINS, CAMILA MARINELLI ; Mohamed, Ahmed ; GUIMARÃES, ANA MARCIA SÁ ; DE BARROS, CRISTIANE DA CONCEIÇÃO ; PAMPUCH, RAQUEL DOS SANTOS ; SVOBODA, WALFRIDO ; GARCIA, RITA DE CASSIA MARIA ; FERREIRA, FERNANDO ; Biondo, Alexander Welker. Impact of demographic characteristics in pet ownership: Modeling animal count according to owners income and age. Preventive Veterinary Medicine (Print). v. 107, p. 1, 2012. Qualis: A1
53.	Maschietto, Mariana ; Silva, Aderbal R. ; Puga, Renato D. ; Lima, Leandro ; Pereira, Carlos B. ; Nakano, Eduardo Y. ; Mello, Barbara ; Gama, Clarissa S. ; Belmonte-de-Abreu, Paulo ; Carraro, Dirce M. ; Palha, Joana A. ; Brentani, Helena. Gene expression of peripheral blood lymphocytes may discriminate patients with schizophrenia from controls. Psychiatry Research (Print). v. 200, p. 1018-1021, 2012. Qualis: A4
54.	MASSARO, J. D. ; EVANGELISTA, A. F. ; CASTELLI, E. C. ; Giuliatti, S. ; DONADI, E. A.. In Silico Analysis of HLA-G Promoter Region to Identify DNA Elements Near to SNPS and Transcription Alterations Evidences. Tissue Antigens. v. 80, p. 100-100, 2012.Qualis: Não identificado (TISSUE ANTIGENS)
55.	Moraes, Maria Carolina S. ; Andrade, Annabel Quinet de ; Carvalho, Helotonio ; Guecheva, Temenouga ; Agnoletto, Mateus H. ; Henriques, João A.P. ; Sarasin, Alain ; Stary, Anne ; Saffid, Jenifer Saffid ; Menck, Carlos F.M.. Both XPA and DNA polymerase eta are necessary for the repair of doxorubicin-induced DNA lesions. Cancer Letters (Print). v. 314, p. 108-118, 2012. Qualis: A1
56.	Moraes, Maria Carolina Strano ; Cabral Neto, Januario Bispo ; Menck, Carlos Frederico Martins. DNA repair mechanisms protect our genome from carcinogenesis. Frontiers in Bioscience (Print). v. 17, p. 1362-1388, 2012. Qualis: A3
57.	MORAIS, ENYARA R. ; Oliveira, Katia C. ; MAGALHÃES, LIZANDRA G. ; MOREIRA, ÉRIKA B.C. ; Verjovski-Almeida, Sergio ; RODRIGUES, Vanderlei. Effects of curcumin on the parasite Schistosoma mansoni: A transcriptomic approach. Molecular and Biochemical Parasitology (Print). v. 187, p. 91-97, 2012. Qualis: A4
58.	Nagasaki, M. ; FUJITA, A. ; SEKIYA, Y. ; SAITO, A. ; IKEDA, E. ; LI, C. ; Miyano, S.. XiP: a computational environment to create, extend and share workflows. Bioinformatics (Oxford. Print). v. 29, p. 137-139, 2012. Qualis: Não identificado (PRINT))
59.	Nakaya, Helder I.; Pulendran, Bali. Systems vaccinology. Current Opinion in HIV and AIDS (Print). v. 7, p. 24-31, 2012. Qualis: Não identificado (CURRENT OPINION IN HIV AND AIDS)
60.	Nakaya, Helder I; Gardner, Joy ; Poo, Yee-Suan ; Major, Lee ; Pulendran, Bali ; Suhrbier, Andreas. Gene profiling of chikungunya virus arthritis reveals significant overlap with rheumatoid arthritis. Arthritis and Rheumatism. v. 64, p. n/a-n/a, 2012. Qualis: Não identificado (ARTHRITIS AND RHEUMATISM)
61.	Novaes, Jeniffer ; RANGEL, L. T. L. D. ; FERRO, M. ; Abe, Ricardo Y. ; Manha, Alessandra P.S. ; de Mello, Joana C.M. ; Varuzza, Leonardo ; DURHAM, A. M. ; Madeira, Alda Maria B.N. ; Gruber, Arthur. A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages. International Journal for Parasitology. v. 42, p. 39-48, 2012. Qualis: A1
62.	Oliveira, Katia C. ; Carvalho, Mariana L.P. ; Verjovski-Almeida, Sergio ; LoVerde, Philip T.. Effect of human TGF-β on the gene expression profile of Schistosoma mansoni adult worms. Molecular and Biochemical Parasitology (Print). v. 183, p. 132-139, 2012. Qualis: A4
63.	OLIVEIRA, S. T. ; Messick, J.B. ; Biondo, Alexander W. ; Santos, A. P. ; STEDILE, R. ; DALMOLIN, M. L. ; Guimaraes, A.M.S. ; MOHAMED, A. ; RIEDIGER, I. ; GONZALEZ, F. H. D.. Exposure to Leptospira spp. in sick dogs, shelter dogs and dogs from an endemic area: points to consider. Acta Scientiae Veterinariae (Online). v. 40, p. 1056, 2012.Qualis: Não identificado (IN SICK DOGS, SHELTER DOGS AND DOGS FROM AN ENDEMIC AREA: POINTS TO CONSIDER. ACTA SCIENTIAE VETERINARIAE)
64.	PAIXAO-CORTES, V. R. ; VISCARDI, L. ; SALZANO, F. M. ; HÜNEMEIER, T. ; BORTOLINI, M. C.. Homo sapiens, Homo neanderthalensis and the Denisova specimen: new insights on their evolutionary histories using whole-genome comparisons. Genetics and Molecular Biology (Impresso). v. 35, p. 904-911, 2012. Qualis: A4
65.	Palhares, Alessandra C ; Maccheroni, Walter ; Souza, Anete P ; Marconi, Thiago G ; Mollinari, Marcelo ; Gazaffi, Rodrigo ; Garcia, Antonio Augusto F ; Vieira, Maria Lucia Carneiro ; Rodrigues-Morais, Taislene B ; Jordão, Hamilton ; Van Sluys, Marie-Anne ; Domingues, Douglas S ; et.al. A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers. BMC Genetics (Online). v. 13, p. 51, 2012. Qualis: A3
66.	Paschoal, Alexandre Rossi ; Maracaja-Coutinho, Vinicius ; Setubal, João Carlos ; Simões, Zilá Luz Paulino ; Verjovski-Almeida, Sergio ; Durham, Alan Mitchell. Non-coding transcription characterization and annotation: A guide and web resource for non-coding RNA databases. RNA Biology. v. 9, p. 274-282, 2012. Qualis: A2
67.	Patavino, Giuseppina Maria ; De Almeida-Neto, Cesar ; Liu, Jing ; Wright, David J. ; Mendrone-Junior, Alfredo ; Ferreira, Maria Inês Lopes ; de Freitas Carneiro, Anna Bárbara ; Custer, Brian ; Ferreira, João Eduardo ; Busch, Michael P. ; Sabino, Ester Cerdeira. Number of recent sexual partners among blood donors in Brazil: associations with donor demographics, donation characteristics, and infectious disease markers. Transfusion (Arlington, Va.). v. 52, p. 151-159, 2012. Qualis: A3
68.	REICH, D. ; Patterson, N ; Campbell D ; Mazières S ; Ray, N ; Parra, Maria V. ; Rojas, W ; Duque, Constanza ; Mesa, N ; García, LF ; Triana, O ; Blair, S ; Maestre, A ; Dib, JC ; Bravi, CM ; Bailliet, G ; Corach, D ; HÜNEMEIER, T. ; BORTOLINI, M. C. ; SALZANO, F. M. ; et.al. Reconstructing Native American population history. Nature (London). v. 00, p. 00-00, 2012. Qualis: A1
69.	REIS, EM; Reis, Eduardo M. ; VERJOVSKI-ALMEIDA, Sergio. Perspectives of Long Non-Coding RNAs in Cancer Diagnostics. Frontiers in Genetics. v. 3, p. 1-8, 2012. Qualis: A2
70.	RODRIGUES, T. C. ; CARVALHO, F. ; Verjovski-Almeida, S. ; Krepischi, A. C. V. ; Rosenberg, C.. Abstract 1168: Identification of CNA signatures in prostate cancer: Narrowing chromosome regions related with occurrence, prognosis and recurrence after treatment. Cancer Research (Chicago, Ill.). v. 72, p. 1168, 2012. Qualis: A1
71.	Sabino, Ester C. ; Gonçalez, Thelma T. ; Carneiro-Proietti, Anna Bárbara ; Sarr, Moussa ; Ferreira, João Eduardo ; Sampaio, Divaldo A. ; Salles, Nanci A. ; Wright, David J. ; Custer, Brian ; Busch, Michael ; FOR THE NHLBI RETROVIRUS EPIDEMIOLOGY DONOR STUDY-II (REDS-II), INTERNATIONAL COMPONENT. Human immunodeficiency virus prevalence, incidence, and residual risk of transmission by transfusions at Retrovirus Epidemiology Donor Study-II blood centers in Brazil. Transfusion (Arlington, Va.). v. 52, p. 870-879, 2012. Qualis: A3
72.	SALLES, IVAN S. ; BUCKERIDGE, MARCOS S.. Cronobiologia vegetal: aspectos fisiológicos de um relógio verde. Revista da Biologia. v. 9, p. 45-49, 2012. Qualis: B4
73.	SALLES, IVAN S. ; BUCKERIDGE, MARCOS S.. Coordenação temporal da degradação das reservas dos cotilédones de jatobá (Himenaea courbaril L.). Revista da Biologia. v. 9, p. 50-52, 2012. Qualis: B4
74.	Santos, A. P. ; GUIMARÃES, A. M. S. ; do Nascimento, Naila C ; SanMiguel, Phillip ; Messick, Joanne B. Complete Genome Sequence of Mycoplasma wenyonii Strain Massachusetts. Journal of Bacteriology (Print). v. 194, p. 5458-5459, 2012.Qualis: A3
75.	SANTOS, W. D. ; Adriana Froutman Lopes ; BARONI, A. M. ; Alcântara, P. H. N. ; BUCKERIDGE, M. S.. Penicillium citrinum Polysaccharidases. Journal of Agronomical Sciences. v. 1, p. 139-152-152, 2012.Qualis: C (JOURNAL OF AGRONOMIC SCIENCES)
76.	Sato, João Ricardo ; FUJITA, A. ; Hoexter, Marcelo Queiroz ; Rohde, Luis Augusto. Evaluation of Pattern Recognition and Feature Extraction Methods in ADHD Prediction. Frontiers in Systems Neuroscience. v. 6, p. 1, 2012. Qualis: A1
77.	Schuch, André Passaglia ; Lago, Juliana Carvalhães ; Yagura, Teiti ; Menck, Carlos Frederico Martins. DNA Dosimetry Assessment for Sunscreen Genotoxic Photoprotection. Plos One. v. 7, p. e40344, 2012. Qualis: A1
78.	Schuch, André Passaglia ; Yagura, Teiti ; Makita, Kazuo ; Yamamoto, Hiromasa ; Schuch, Nelson Jorge ; Agnez-Lima, Lucymara Fassarella ; MacMahon, Ricardo Monreal ; Menck, Carlos Frederico Martins. DNA damage profiles induced by sunlight at different latitudes. Environmental and Molecular Mutagenesis (Print). v. 53, p. 198-206, 2012. Qualis: A3
79.	SEBOLLELA, A. ; FREITAS-CORREA, L. ; Oliveira, F. F. ; Paula-Lima, A. C. ; Saraiva, L. M. ; Martins, S. M. ; Carvalho Mota, L. D. ; Torres, C. ; Alves-Leon, S. ; de Souza, J. M. ; CARRARO, D. M. ; BRENTANI, H. ; De Felice, F. G. ; FERREIRA, S. T.. Amyloid- oligomers induce differential gene expression in adult human brain slices. The Journal of Biological Chemistry (Print). v. 287, p. 7436-7445, 2012. Qualis: A1
80.	SILVA, ADERBAL R. T. ; GRINBERG, LEA T. ; FARFEL, JOSE M. ; DINIZ, BRENO S. ; LIMA, LEANDRO A. ; SILVA, PAULO J. S. ; FERRETTI, RENATA E. L. ; ROCHA, RAFAEL M. ; FILHO, WILSON JACOB ; Carraro, Dirce M. ; BRENTANI, HELENA ; GINSBERG, STEPHEN D.. Transcriptional Alterations Related to Neuropathology and Clinical Manifestation of Alzheimer¿s Disease. Plos One. v. 7, p. e48751, 2012. Qualis: A1
81.	SLATER, S. ; Setubal, Joao C ; HOUMIEL, K. ; SUN, J. ; KAUL, R. ; GOLDMAN, B. ; FARRAND, S. ; Almeida, Nalvo F ; BURR, T. ; NESTER, E. W. ; RHOADS, D. ; WELCH, R. ; WOOD, Derek W.. The Genome of Agrobacterium tumefaciens C58: Reconciliation of sequence data, updated annotation, and distribution of linear chromosome in genus Agrobacterium.. Applied and Environmental Microbiology (Print),. p. 1414-1417, 2012. Qualis: A1 (APPLIED AND ENVIRONMENTAL MICROBIOLOGY)
82.	SOLTYS, DANIELA T. ; ROCHA, CLARISSA R.R. ; LERNER, LETÍCIA K. ; DE SOUZA, TIAGO A. ; MUNFORD, VERIDIANA ; CABRAL, FERNANDA ; NARDO, TIZIANA ; STEFANINI, MIRIA ; Sarasin, Alain ; CABRAL-NETO, JANUÁRIO B. ; Menck, Carlos F.M.. Novel XPG ( ERCC5 ) mutations affect DNA repair and cell survival after ultraviolet but not oxidative stress. Human Mutation. v. 34, p. 481-489, 2012. Qualis: A2
83.	TAKAHASHI, D. Y. ; SATO, João Ricardo ; FERREIRA, Carlos Eduardo ; FUJITA, A. Discriminating Different Classes of Biological Networks by Analyzing the Graphs Spectra Distribution. Plos One. v. 7, p. e49949, 2012. Qualis: A1
84.	Ullmann, Leila Sabrina ; Hoffmann, Juliano Leônidas ; de Moraes, Wanderlei ; Cubas, Zalmir Silvino ; dos Santos, Leonilda Correia ; da Silva, Rodrigo Costa ; MOREIRA, N. ; GUIMARÃES, A. M. S. ; CAMOSSI, L. G. ; Langoni, Helio ; Biondo, Alexander W.. Serologic Survey for Leptospira spp. in Captive Neotropical Felids in Foz do Iguaçu, Paraná, Brazil. Journal of Zoo and Wildlife Medicine. v. 43, p. 223-228, 2012.Qualis: Não identificado (IN CAPTIVE NEOTROPICAL FELIDS IN FOZ DO IGUAÇU, PARANÁ, BRAZIL. JOURNAL OF ZOO AND WILDLIFE MEDICINE)
85.	Varani, Alessandro M. ; MONTEIRO-VITORELLO, CLAUDIA B. ; ALMEIDA, LUIZ G.P. DE ; SOUZA, RANGEL C. ; CUNHA, OBERDAN L. ; Lima, Wanessa C. ; Civerolo, Edwin ; SLUYS, MARIE-ANNE VAN ; VASCONCELOS, ANA T.R.. Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains. Genetics and Molecular Biology (Impresso). v. 35, p. 149-152, 2012. Qualis: A4
86.	VARANI, ALESSANDRO M. ; MONTEIRO-VITORELLO, CLAUDIA BARROS ; Nakaya, Helder I. ; Van Sluys, Marie-Anne. The Role of Prophage in Plant-Pathogenic Bacteria. Annual Review of Phytopathology (Print). v. 51, p. 130531172133008, 2012. Qualis: A1
87.	VIBRANOVSKI, M. D.; ZHANG, Y. ; KEMKEMER, C. ; LOPES, H. F. ; KARR, T. L. ; LONG, M.. Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome. BMC Biology. v. 10, p. 49, 2012. Qualis: A1
88.	VIBRANOVSKI, M. D.; ZHANG, Y. ; KEMKEMER, C. ; VANKUREN, N. W. ; LOPES, H. F. ; Karr T.L. ; LONG, M.. Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes. BMC Evolutionary Biology (Online). v. 12, p. 169, 2012. Qualis: A1
89.	VICENTE, F. F. R. ; LOPES, F. M. ; HASHIMOTO, R. F. ; CESAR JUNIOR, R. M.. Assessing the Gain of Biological Data Integration in Gene Networks Inference. BMC Genomics. v. 13, p. 1-12, 2012. Qualis: A2
90.	VICENTINI, R. ; NOGUEIRA, F. T. S. ; Vincentz, M. ; BEM, L. E. V. ; SLUYS, M. A.. Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs. Tropical Plant Biology (Online). v. 1, p. 1, 2012. Qualis: A3
91.	WANG, JUN ; LONG, MANYUAN ; VIBRANOVSKI, MARIA D.. Retrogenes Moved Out of the Z Chromosome in the Silkworm. Journal of Molecular Evolution. v. 74, p. 113-126, 2012. Qualis: A3
92.	Wattam, A. R. ; INZANA, T. J. ; Williams, K. P. ; Mane, S. P. ; Shukla, M. ; Almeida, N. F. ; Dickerman, A. W. ; MASON, S. ; MORIYON, I. ; O'CALLAGHAN, D. ; WHATMORE, A. M. ; Sobral, B. W. ; Tiller, R. V. ; Hoffmaster, A. R. ; Frace, M. A. ; DE CASTRO, C. ; MOLINARO, A. ; Boyle, S. M. ; De, B. K. ; SETUBAL, J. C. ; et.al. Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway. MBIO. v. 3, p. e00246-12-e00246-12, 2012. Qualis: A1
93.	WILSON, M. L. ; CAI, Y. ; HANLON, R. ; TAYLOR, S. ; CHEVREUX, B. ; SETUBAL, J. C. ; Tyler, B. M. ; PECCOUD, J.. Sequence verification of synthetic DNA by assembly of sequencing reads. Nucleic Acids Research (Online). v. 41, p. e25-e25, 2012. Qualis: A1
94.	ZHANG, DAPENG ; De Souza, Robson F ; Anantharaman, Vivek ; Iyer, Lakshminarayan M ; Aravind, L. Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics. BIOL DIRECT. v. 7, p. 18, 2012. Qualis: Não identificado (BIOL DIRECT)
95.	ZHANG, YONG E. ; LANDBACK, PATRICK ; VIBRANOVSKI, MARIA ; LONG, MANYUAN. New genes expressed in human brains: Implications for annotating evolving genomes. BioEssays (Cambridge). v. 34, p. 982-991, 2012. Qualis: A1
96.	ZPEVAK, FRANCISCO ANTONIO ; PEREZ, SÔNIA CRISTINA JULIANO GÜALTIERI DE ; BUCKERIDGE, MARCOS SILVEIRA. Isothermal seed germination of Adenanthera pavonina. Brazilian Journal of Botany. v. 35, p. 401-408, 2012. Qualis: B1

2011

1.	Alves, João M. P.; Voegtly, Logan ; Matveyev, Andrey V. ; Lara, Ana M. ; da Silva, Flávia Maia ; Serrano, Myrna G. ; Buck, Gregory A. ; Teixeira, Marta M. G. ; Camargo, Erney P.. Identification and Phylogenetic Analysis of Heme Synthesis Genes in Trypanosomatids and Their Bacterial Endosymbionts. Plos One. v. 6, p. e23518, 2011. Qualis: A1
2.	Amorim, Henrique V. ; Lopes, Mário Lucio ; Castro Oliveira, Juliana Velasco ; Buckeridge, Marcos S. ; Goldman, Gustavo Henrique. Scientific challenges of bioethanol production in Brazil. Applied Microbiology and Biotechnology. v. 91, p. 1267-1275, 2011. Qualis: A2
3.	Amui, Saulo França ; Puga, Renato David ; Martins Soares, Andreimar ; Giuliatti, Silvana. Plant-antivenom: Database of anti-venom medicinal plants. Electronic Journal of Biotechnology. v. 14, p. 1-9, 2011. Qualis: A4
4.	Araujo-Montoya, B.O. ; Rofatto, H.K. ; Tararam, C.A. ; Farias, L.P. ; Oliveira, K.C. ; Verjovski-Almeida, S. ; Wilson, R.A. ; Leite, L.C.C.. Schistosoma mansoni: Molecular characterization of Alkaline Phosphatase and expression patterns across life cycle stages. Experimental Parasitology,. p. 284-291, 2011. Qualis: A4 (EXPERIMENTAL PARASITOLOGY)
5.	Araújo, Luciano V ; Malkowski, Simon ; Braghetto, Kelly R ; Passos-Bueno, Maria R ; Zatz, Mayana ; Pu, Calton ; FERREIRA, JOÃO E. A rigorous approach to facilitate and guarantee the correctness of the genetic testing management in human genome information systems. BMC Genomics. v. 12, p. S13-8, 2011. Qualis: A2
6.	Bando, Silvia Y. ; Alegro, Maryana C. ; Amaro, Edson ; Silva, Alexandre V. ; Castro, Luiz H. M. ; Wen, Hung-Tzu ; Lima, Leandro de A. ; Brentani, Helena ; Brentani, H ; Moreira-Filho, Carlos Alberto. Hippocampal CA3 Transcriptome Signature Correlates with Initial Precipitating Injury in Refractory Mesial Temporal Lobe Epilepsy. Plos One. v. 6, p. e26268, 2011. Qualis: A1
7.	Begnami, Maria D. ; Fregnani, José Humberto T G ; Brentani, Helena ; Torres, Cesar ; Costa, Wilson Luiz ; Montagnini, Andre ; Nonogaki, Suely ; Soares, Fernando A. IDENTIFICATION OF PROTEIN EXPRESSION SIGNATURES IN GASTRIC CARCINOMAS USING CLUSTERING ANALYSIS. Journal of Gastroenterology and Hepatology. v. 27, p. 378-384, 2011. Qualis: A2
8.	Boes, Katie M. ; Goncarovs, Kristina O. ; Thompson, Craig A. ; Halik, Lindsay A. ; Santos, Andrea P. ; Guimaraes, Ana M. S. ; Feutz, Marybeth Miskovic ; Holman, Patricia J. ; Vemulapalli, Ramesh ; Messick, Joanne B.. Identification of a Mycoplasma ovis-like organism in a herd of farmed white-tailed deer (Odocoileus virginianus) in rural Indiana. Veterinary Clinical Pathology. v. 40, p. n/a-n/a, 2011. Qualis: A3
9.	Bogdanove, A. J. ; Koebnik, R. ; Lu, H. ; Furutani, A. ; Angiuoli, S. V. ; Patil, P. B. ; Van Sluys, M.-A. ; Ryan, R. P. ; Meyer, D. F. ; Han, S.-W. ; Aparna, G. ; Rajaram, M. ; Delcher, A. L. ; Phillippy, A. M. ; Puiu, D. ; Schatz, M. C. ; Shumway, M. ; Sommer, D. D. ; Trapnell, C. ; Benahmed, F. ; et.al. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.. Journal of Bacteriology (Print). v. 193, p. 5450-5464, 2011. Qualis: A3
10.	Bousquet, Jean ; Anto, Josep M ; Sterk, Peter J ; Adcock, Ian M ; Chung, Kian ; Roca, Josep ; Agusti, Alvar ; Brightling, Chris ; Cambon-Thomsen, Anne ; Cesario, Alfredo ; Abdelhak, Sonia ; Antonarakis, Stylianos E ; Avignon, Antoine ; Ballabio, Andrea ; Baraldi, Eugenio ; Baranov, Alexander ; Bieber, Thomas ; Bockaert, Joël ; Brahmachari, Samir ; Verjovski-Almeida, S. ; et.al. Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Medicine. v. 3, p. 43, 2011. Qualis: A1
11.	BRENTANI, H. ; CABALLERO, O. ; CAMARGO, A. ; DASILVA, A. ; DASILVA, W. ; DIASNETO, E ; 11_other_authors ; RIGGINS, G. ; SIMPSON, A. J. ; SOUZA, S. ; STEVENSON, B. ; STRAUSBERG, R. ; TAJARA, E ; Verjovski-Almeida, S. ; AND.HCGP.CGAP.ANNOTATION.CONSORTIUM,. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. Proceedings of the National Academy of Sciences of the United States of America. v. 100, p. 13418-13423, 2011. Qualis: A1
12.	Brentani, Helena; Nakano, Eduardo Y ; Martins, Camila B ; Izbicki, Rafael ; Pereira, Carlos Alberto. Disequilibrium Coefficient: A Bayesian Perspective. Statistical Applications in Genetics and Molecular Biology. v. 10, p. art.22, 2011. Qualis: B1
13.	Cai, Rongman ; Lewis, James ; Yan, Shuangchun ; Liu, Haijie ; Clarke, Christopher R. ; Campanile, Francesco ; Almeida, Nalvo F. ; Studholme, David J. ; Lindeberg, Magdalen ; Schneider, David ; Zaccardelli, Massimo ; Setubal, Joao C. ; Morales-Lizcano, Nadia P. ; Bernal, Adriana ; Coaker, Gitta ; Baker, Christy ; Bender, Carol L. ; Leman, Scotland ; Vinatzer, Boris A.. The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity. PLoS Pathogens. v. 7, p. e1002130, 2011. Qualis: A1
14.	Carraro, Dirce Maria ; Ferreira, Elisa Napolitano ; Molina, Gustavo de Campos ; Puga, Renato David ; Abrantes, Eduardo Fernandes ; Trapé, Adriana Priscila ; Ekhardt, Bedrich L. ; Nunes, Diana Noronha ; Brentani, Maria Mitzi ; Arap, Wadih ; Pasqualini, Renata ; Brentani, Helena ; Dias-Neto, Emmanuel ; Brentani, Ricardo Renzo. Poly (A)+ Transcriptome Assessment of ERBB2-Induced Alterations in Breast Cell Lines. Plos One. v. 6, p. e21022, 2011. Qualis: A1
15.	CHEN, MING ; ZOU, MING ; FU, BEIDE ; LI, XIN ; VIBRANOVSKI, MARIA D. ; GAN, XIAONI ; WANG, DENGQIANG ; WANG, WEN ; LONG, MANYUAN ; HE, SHUNPING. Evolutionary Patterns of RNA-Based Duplication in Non-Mammalian Chordates. Plos One. v. 6, p. e21466, 2011. Qualis: A1
16.	CHEN, Z. ; ZHANG, Y. ; VIBRANOVSKI, M. D. ; LUO, J. ; GAO, G. ; LONG, M.. Deficiency of X-Linked Inverted Duplicates with Male-Biased Expression and the Underlying Evolutionary Mechanisms in the Drosophila Genome. Molecular Biology and Evolution. v. 28, p. 2823-2832, 2011. Qualis: A1
17.	COLLEN, J. ; COLLEN, P. N. ; REIS, Marcelo da Silva ; PEDERSEN, M. ; SETUBAL, J. C. ; Varani, A. ; Colepicolo, P. ; OLIVEIRA, Mariana Cabral de. Analysis of expressed sequence tags from the agarophyte Gracilaria tenuistipitata (Rhodophyta). Journal of Applied Phycology. v. 24, p. 641-647, 2011. Qualis: A2
18.	Contini V ; BERTUZZI, G. P. ; Polina, Evelise R ; HÜNEMEIER, T. ; Hendler, Elisa M ; Hutz, M. ; Bau, CD. A haplotype analysis is consistent with the role of functional HTR1B variants in alcohol dependence. Drug and Alcohol Dependence. v. 00, p. 00000-00000, 2011. Qualis: A1
19.	Dal-Bianco, Maximiller ; Carneiro, Monalisa Sampaio ; Hotta, Carlos Takeshi ; Chapola, Roberto Giacomini ; Hoffmann, Hermann Paulo ; Garcia, Antonio Augusto Franco ; SOUZA, GLAUCIA MENDES. Sugarcane improvement: how far can we go?. Current Opinion in Biotechnology. v. x, p. xx, 2011. Qualis: A1
20.	De Almeida-Neto, Cesar ; Liu, Jing ; Wright, David J. ; Mendrone-Junior, Alfredo ; Takecian, Pedro L. ; Sun, Yu ; Ferreira, Joao Eduardo ; de Alencar Fischer Chamone, Dalton ; Busch, Michael P. ; Sabino, Ester Cerdeira ; FOR THE NHLBI RETROVIRUS EPIDEMIOLOGY DONOR STUDY-II (REDS-II), INTERNATIONAL COMPONENT. Demographic characteristics and prevalence of serologic markers among blood donors who use confidential unit exclusion (CUE) in São Paulo, Brazil: implications for modification of CUE polices in Brazil. Transfusion (Arlington, Va.). v. 51, p. 191-197, 2011. Qualis: A3
21.	Duraiswamy, J. ; Ibegbu, C. C. ; Masopust, D. ; Miller, J. D. ; Araki, K. ; Doho, G. H. ; Tata, P. ; Gupta, S. ; Zilliox, M. J. ; NAKAYA, H. I. ; Pulendran, B. ; Haining, W. N. ; Freeman, G. J. ; Ahmed, R.. Phenotype, Function, and Gene Expression Profiles of Programmed Death-1hi CD8 T Cells in Healthy Human Adults. The Journal of Immunology (1950). v. 186, p. 4200-4212, 2011. Qualis: A1
22.	Farias, Leonardo P. ; Tararam, Cibele A. ; Miyasato, Patricia A. ; Nishiyama, Milton Y. ; Oliveira, Katia C. ; KAWANO, Toshie ; Verjovski-Almeida, Sergio ; Leite, Luciana Cezar de Cerqueira. Screening the Schistosoma mansoni transcriptome for genes differentially expressed in the schistosomulum stage in search for vaccine candidates. Parasitology Research (1987. Print). v. 108, p. 123-135, 2011. Qualis: Não identificado (PRINT))
23.	FUJITA, A; Sato, J. R. ; Demasi, Marcos Almeida ; Yamaguchi, R. ; Shimamura, T. ; FERREIRA, Carlos Eduardo ; Sogayar, Mari C ; Miyano, S.. Inferring contagion in regulatory networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics (Print). v. 8, p. 570-576, 2011. Qualis: A1
24.	Garsmeur, Olivier ; Charron, Carine ; Bocs, Stéphanie ; Jouffe, Vincent ; Samain, Sylvie ; Couloux, Arnaud ; Droc, Gaëtan ; Zini, Cyrille ; Glaszmann, Jean-Christophe ; Van Sluys, Marie-Anne ; D¿Hont, Angélique. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytologist (Print). v. 189, p. 629-642, 2011. Qualis: A1
25.	Gazarini, Marcos L. ; Beraldo, Flávio H. ; Almeida, Fabiana M. ; Bootman, Martin ; da Silva, Aline M. ; Garcia, Célia R. S.. Melatonin triggers PKA activation in the rodent malaria parasite Plasmodium chabaudi. Journal of Pineal Research. v. 50, p. 64-70, 2011. Qualis: A1
26.	Giolo, S.R. ; SOLER, J. M. P. ; Batista, M.J. ; ALMEIDA, M. A. A. ; Pereira, A.C.. Evidence of SNP effect on the risk of rheumatoid arthritis: effects of covariate adjustment upon association results. Revista Brasileira de Biometria. v. 29, p. 47-59, 2011.Qualis: C
27.	GIOLO, SUELY R ; SOLER, JÚLIA M P ; GREENWAY, STEVEN C ; ALMEIDA, MARCIO A A ; DE ANDRADE, MARIZA ; SEIDMAN, J G ; SEIDMAN, CHRISTINE E ; KRIEGER, JOSÉ E ; PEREIRA, ALEXANDRE C. Brazilian urban population genetic structure reveals a high degree of admixture. European Journal of Human Genetics. v. 20, p. 111-116, 2011. Qualis: A3
28.	Grazziotin, Ana Laura ; Santos, Andrea Pires ; Guimaraes, Ana Marcia Sa ; Mohamed, Ahmed ; Cubas, Zalmir Silvino ; Oliveira, Marcos Jose de ; Santos, Leonilda Correia dos ; de Moraes, Wanderlei ; Vieira, Rafael Felipe da Costa ; Donatti, Lucelia ; Filho, Ivan Roque de Barros ; Biondo, Alexander Welker ; Messick, Joanne Belle. Mycoplasma ovis in captive cervids: prevalence, molecular characterization and phylogeny. Veterinary Microbiology (Amsterdam. Print),. p. 1, 2011. Qualis: Não identificado (PRINT),)
29.	GRAZZIOTTIN, A. L. ; DUARTE, J. M. B. ; SZABO, M. P. J. ; Santos, A.P. ; GUIMARAES, A. M. S. ; Mohamed, Ahmed ; Vieira, Rafael F.C. ; BARROS FILHO, I. R. ; BIONDO, A. W. ; Messick, J.B.. Prevalence and molecular characterization of Mycoplasma ovis in selected free-ranging Brazilian deer populations. Journal of Wildlife Diseases. v. 47, p. 1005-1011, 2011.Qualis: A3
30.	Guimaraes, A.M.S.; Vieira, R.F.C. ; Poletto, R. ; VEMULAPALLI, R. ; Santos, A.P. ; de Moraes, W. ; Cubas, Z.S. ; Santos, L.C. ; Marchant-Forde, J.N. ; TIMENETSKY, J. ; Biondo, A.W. ; Messick, J.B.. A quantitative TaqMan PCR assay for the detection of Mycoplasma suis. Journal of Applied Microbiology (Print),. p. no-no, 2011. Qualis: A3 (JOURNAL OF APPLIED MICROBIOLOGY)
31.	Guimaraes, Ana M. S.; Santos, Andrea P. ; SanMiguel, Phillip ; Walter, Thomas ; Timenetsky, Jorge ; Messick, Joanne B.. Complete Genome Sequence of Mycoplasma suis and Insights into Its Biology and Adaption to an Erythrocyte Niche. Plos One. v. 6, p. e19574, 2011. Qualis: A1
32.	Hamilton, T. L. ; LUDWIG, M. ; DIXON, R. ; Boyd, E. S. ; dos SANTOS, P. C. ; SETUBAL, J. C. ; BRYANT, D. A. ; Dean, D. R. ; PETERS, J. W.. Transcriptional Profiling of Nitrogen Fixation in Azotobacter vinelandii. Journal of Bacteriology (Print). v. 193, p. 4477-4486, 2011. Qualis: A3
33.	Higa, Carlos HA ; Louzada, Vitor HP ; Andrade, Tales P ; Hashimoto, Ronaldo F. Constraint-based analysis of gene interactions using restricted boolean networks and time-series data. BMC Proceedings. v. 5, p. S5, 2011. Qualis: Não identificado (BMC PROCEEDINGS)
34.	HORIMOTO, ANDREA R V R ; GIOLO, SUELY R ; OLIVEIRA, CAMILA M ; ALVIM, RAFAEL O ; SOLER, JULIA P ; DE ANDRADE, MARIZA ; KRIEGER, JOSE E ; PEREIRA, ALEXANDRE C. Heritability of physical activity traits in Brazilian families: the Baependi Heart Study. BMC Medical Genetics (Online). v. 12, p. 155, 2011. Qualis: A4
35.	JACINTO, DANIELE S. ; MUNIZ, HELOISA DOS SANTOS ; Venancio, Thiago M. ; Wilson, R. Alan ; Verjovski-Almeida, Sergio ; DEMARCO, Ricardo. Curupira-1 and Curupira-2, two novel Mutator-like DNA transposons from the genomes of human parasites Schistosoma mansoni and Schistosoma japonicum. Parasitology (London. Print). v. 138, p. 1124-1133, 2011. Qualis: Não identificado (PRINT))
36.	Jalan, N. ; Aritua, V. ; Kumar, D. ; Yu, F. ; Jones, J. B. ; Graham, J. H. ; SETUBAL, J. C. ; Wang, N.. Comparative Genomic Analysis of Xanthomonas axonopodis pv. citrumelo F1, Which Causes Citrus Bacterial Spot Disease, and Related Strains Provides Insights into Virulence and Host Specificity. Journal of Bacteriology (Print). v. 193, p. 6342-6357, 2011. Qualis: A3
37.	Kasparek, Tomas ; Thomaz, Carlos Eduardo ; Sato, Joao Ricardo ; Schwarz, Daniel ; Janousova, Eva ; Marecek, Radek ; Prikryl, Radovan ; Vanicek, Jiri ; Fujita, Andre ; Ceskova, Eva. Maximum-uncertainty linear discrimination analysis of first-episode schizophrenia subjects. Psychiatry Research. Neuroimaging (Print). v. 191, p. 174-181, 2011. Qualis: Não identificado (NEUROIMAGING)
38.	Kasturi, Sudhir Pai ; Skountzou, Ioanna ; Albrecht, Randy A. ; Koutsonanos, Dimitrios ; Hua, Tang ; Nakaya, Helder I. ; Ravindran, Rajesh ; Stewart, Shelley ; Alam, Munir ; Kwissa, Marcin ; Villinger, Francois ; Murthy, Niren ; Steel, John ; Jacob, Joshy ; Hogan, Robert J. ; García-Sastre, Adolfo ; Compans, Richard ; Pulendran, Bali. Programming the magnitude and persistence of antibody responses with innate immunity. Nature (London). v. 470, p. 543-547, 2011. Qualis: A1
39.	Lima, F. A. ; Moreira-Filho, C. A. ; Ramos, P. L. ; BRENTANI, H. ; Lima, L. d. A. ; Arrais, M. ; Bento-de-Souza, L. C. ; Bento-de-Souza, L. ; Duarte, M. I. ; Coutinho, A. ; Carneiro-Sampaio, M.. Decreased AIRE Expression and Global Thymic Hypofunction in Down Syndrome. The Journal of Immunology (1950). v. 187, p. 3422-3430, 2011. Qualis: A1
40.	Manque, P. A. ; Fernando A. Tenjo ; Ute Woehlbier ; Ana M. Lara ; SERRANO, M. G. ; XU, P. ; Alves, Joao M ; Ronald Smeltz ; Daniel Conrad ; BUCK, G. A.. Identification and immunological characterization of three potential vaccinogens against Cryptosporidium. Clinical and Vaccine Immunology. v. 18, p. 1796-1802, 2011. Qualis: A3
41.	Manque, P. A. ; Probst, C. ; PEREIRA, M. C. S. ; RAMPAZZO, R. C. P. ; OZAKI, L. S. ; PAVONI, D. P. ; Silva Neto, D. T. ; CARVALHO, M. R. ; XU, P. ; SERRANO, M. G. ; ALVES, J. M. P. ; Meirelles, M. d. N. S. L. ; GOLDENBERG, S. ; KRIEGER, M. A. ; BUCK, G. A.. Trypanosoma cruzi Infection Induces a Global Host Cell Response in Cardiomyocytes. Infection and Immunity (Print). v. 79, p. 1855-1862, 2011. Qualis: A2
42.	Marques, Fernanda ; Sousa, João C ; Coppola, Giovanni ; Gao, Fuying ; Puga, Renato ; Brentani, Helena ; Geschwind, Daniel H ; Sousa, Nuno ; Correia-Neves, Margarida ; Palha, Joana A. Transcriptome signature of the adult mouse choroid plexus. Fluids and Barriers of the CNS. v. 8, p. 10, 2011. Qualis: A3
43.	Marques, L.M. ; BUZINHANI, M. ; Guimaraes, A.M.S. ; Marques, R.C.P. ; Farias, S.T. ; Neto, R.L. ; YAMAGUTI, M. ; Oliveira, R.C. ; TIMENETSKY, J.. Intraspecific sequence variation in 16S rRNA gene of Ureaplasma diversum isolates. Veterinary Microbiology (Amsterdam. Print),. p. 2, 2011. Qualis: Não identificado (PRINT),)
44.	Maschietto, M ; Trapé, A P ; Piccoli, F S ; Ricca, T I ; Dias, A A M ; Coudry, R A ; Galante, P A ; Torres, C ; Fahhan, L ; Lourenço, S ; Grundy, P E ; de Camargo, B ; de Souza, S ; Neves, E J ; Soares, F A ; Brentani, H ; Carraro, D M. Temporal blastemal cell gene expression analysis in the kidney reveals new Wnt and related signaling pathway genes to be essential for Wilms' tumor onset. CELL DEATH DIS. v. 2, p. e224, 2011. Qualis: Não identificado (CELL DEATH DIS)
45.	Maschietto, Mariana ; Piccoli, Fabio S. ; Costa, Cecilia M.L. ; Camargo, Luiz P. ; Neves, Jose I. ; Grundy, Paul E. ; Brentani, Helena ; Soares, Fernando A. ; Camargo, Beatriz de ; Carraro, Dirce M.. Gene expression analysis of blastemal component reveals genes associated with relapse mechanism in Wilms tumour. European Journal of Cancer. v. 47, p. 2715-2722, 2011. Qualis: A1
46.	Mayworm, M.A.S., ; BUCKERIDGE, M. S. ; Marquez, U.M.L. ; Salatino A. Nutritional reserves of Vochysiaceae seeds: chemical diversity and potential economic uses. Anais da Academia Brasileira de Ciências (Impresso). v. 83, p. 523-531, 2011. Qualis: A2
47.	MESSICK, J. B. ; Santos, A. P. ; GUIMARAES, A. M. S.. Complete Genome Sequences of Two Hemotropic Mycoplasmas, Mycoplasma haemofelis Strain Ohio2 and Mycoplasma suis Strain Illinois. Journal of Bacteriology (Print). v. 193, p. 2068-2069, 2011. Qualis: A3
48.	Nagasaki, M. ; SAITO, A. ; FUJITA, A. ; Tremmel, G. ; Ueno, K. ; IKEDA, E. ; Jeong, E. ; Miyano, S.. Systems biology model repository for macrophage pathway simulation. Bioinformatics (Oxford. Print). v. 27, p. 1591-1593, 2011. Qualis: Não identificado (PRINT))
49.	Nakaya, Helder I.; Li, Shuzhao ; Pulendran, Bali. Systems vaccinology: learning to compute the behavior of vaccine induced immunity. WIRES SYST BIOL MED. v. 19, p. n/a-n/a, 2011. Qualis: Não identificado (WIRES SYST BIOL MED)
50.	Nakaya, Helder I; Wrammert, Jens ; Lee, Eva K ; Racioppi, Luigi ; Marie-Kunze, Stephanie ; Haining, W Nicholas ; Means, Anthony R ; Kasturi, Sudhir P ; Khan, Nooruddin ; Li, Gui-Mei ; McCausland, Megan ; Kanchan, Vibhu ; Kokko, Kenneth E ; Li, Shuzhao ; Elbein, Rivka ; Mehta, Aneesh K ; Aderem, Alan ; Subbarao, Kanta ; Ahmed, Rafi ; Pulendran, Bali ; et.al. Systems biology of vaccination for seasonal influenza in humans. Nature Immunology (Print). v. 12, p. 786-795, 2011. Qualis: A1
51.	Oliveira, K. C. ; Nery, F. G. ; Ferreti, R. E. L. ; Lima, M. C. ; Cappi, C. ; MACHADO-LIMA, A. ; Polichiso, L. ; Carreira, L. L. ; Ávila, C. ; Alho, A. T. D. L. ; BRENTANI, H. P. ; Miguel, E. C. ; Heinsen, H. ; Jacob-Filho, W. ; Pasqualucci, C. A. ; Lafer, B. ; Grinberg, L. T.. Brazilian psychiatric brain bank: a new contribution tool to network studies. Cell and Tissue Banking. v. 13, p. 315-326, 2011. Qualis: A4
52.	Oliveira, Katia C. ; Carvalho, Mariana L. P. ; Maracaja-Coutinho, V. ; KITAJIMA, J. P. ; Verjovski-Almeida, S.. Non-coding RNAs in schistosomes: an unexplored world. Anais da Academia Brasileira de Ciências (Impresso). v. 83, p. 673-694, 2011. Qualis: A2
53.	PAULSEN, B. D. S. ; MACIEL, R. M. ; GALINA, A. ; SILVEIRA, M. S. ; SOUZA, C. S. ; DRUMMOND, H. ; POZZATTO, E. N. ; SILVA JUNIOR, H. ; CHICAYBAM, L. ; MASSUDA, R. ; SETTI-PERDIGAO, P. ; BONAMINO, M. ; ABREU, P. S. B. ; CASTRO, N. G. ; BRENTANI, H. ; REHEN, S. K.. Altered oxygen metabolism associated to neurogenesis of induced pluripotent stem cells derived from a schizophrenic patient. Cell Transplantation. v. XXX, p. XXX-XXX, 2011. Qualis: A2
54.	Potnis, Neha ; Krasileva, Ksenia ; Chow, Virginia ; Almeida, Nalvo F ; Patil, Prabhu B ; Ryan, Robert P ; Sharlach, Molly ; Behlau, Franklin ; Dow, J Max ; Momol, MT ; White, Frank F ; Preston, James F ; Vinatzer, Boris A ; Koebnik, Ralf ; Setubal, João C ; Norman, David J ; Staskawicz, Brian J ; Jones, Jeffrey B. Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics. v. 12, p. 146, 2011. Qualis: A2
55.	Ryan, Robert P. ; Vorhölter, Frank-Jörg ; Potnis, Neha ; Jones, Jeffrey B. ; Van Sluys, Marie-Anne ; Bogdanove, Adam J. ; Dow, J. Maxwell. Pathogenomics of Xanthomonas: understanding bacterium¿plant interactions. Nature Review, Microbiology (Print). v. 9, p. 344-355, 2011. Qualis: A1
56.	Santos, Andrea P ; Guimaraes, Ana MS ; do Nascimento, Naila C ; SanMiguel, Phillip J ; Martin, Samuel W ; Messick, Joanne B. Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence. Veterinary Research. v. 42, p. 102, 2011. Qualis: A1
57.	Santos, Rosângela Portilho Costa ; Benvenuti, Ticiana Thomazine ; Honda, Suzana Terumi ; Valle, Paulo Roberto ; Katayama, Maria Lucia Hirata ; Brentani, Helena Paula ; Carraro, Dirce Maria ; Rozenchan, Patrí ; Brentani, Maria Mitzi ; Lyra, Eduardo Carneiro ; Torres, César Henrique ; Salzgeber, Marcia Batista ; Kaiano, Jane Haruko Lima ; Góes, João Carlos Sampaio ; Folgueira, Maria Aparecida Azevedo Koike. Influence of the interaction between nodal fibroblast and breast cancer cells on gene expression. Tumor Biology. v. 32, p. 145-157, 2011. Qualis: A4
58.	Schlesinger, D ; Grinberg, L T ; Alba, J G ; Naslavsky, M S ; Licinio, L ; Farfel, J M ; Suemoto, C K ; de Lucena Ferretti, R E ; Leite, R E P ; de Andrade, M P ; dos Santos, A C F ; Brentani, H ; Pasqualucci, C A ; Nitrini, R ; Jacob-Filho, W ; Zatz, M. African ancestry protects against Alzheimer's disease-related neuropathology. Molecular Psychiatry. v. 18, p. 79-85, 2011. Qualis: A1
59.	Setta, Nathalia ; Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia Marcia Aparecida. Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup. Journal of Molecular Evolution. v. 72, p. 326-338, 2011. Qualis: A3
60.	Silva, Giovanna B. ; Ionashiro, Mari ; Carrara, Thalita B. ; Crivellari, Augusto C. ; Tine, M. A. S. ; Prado, Jefferson ; Carpita, Nicholas C. ; BUCKERIDGE, MARCOS S.. Cell wall polysaccharides from fern leaves: Evidence for a mannan-rich Type III cell wall in Adiantum raddianum. Phytochemistry. v. 72, p. 2352-2360, 2011. Qualis: A2
61.	SOUZA, GLAUCIA MENDES ; BERGES, HELENE ; BOCS, STEPHANIE ; CASU, ROSANNE ; D'HONT, ANGELIQUE ; FERREIRA, JOÃO EDUARDO ; HENRY, ROBERT ; Ming, Ray ; POTIER, BERNARD ; Sluys, Marie-Anne ; VINCENTZ, Michel ; PATERSON, ANDREW H.. The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology (Online). v. 4, p. 145-156, 2011. Qualis: A3
62.	Staquicini, F. I. ; Cardo-Vila, M. ; Kolonin, M. G. ; Trepel, M. ; Edwards, J. K. ; Nunes, D. N. ; Sergeeva, A. ; Efstathiou, E. ; Sun, J. ; Almeida, N. F. ; Tu, S.-M. ; Botz, G. H. ; Wallace, M. J. ; O'Connell, D. J. ; Krajewski, S. ; Gershenwald, J. E. ; Molldrem, J. J. ; Flamm, A. L. ; Koivunen, E. ; SETUBAL, J. C. ; et.al. Vascular ligand-receptor mapping by direct combinatorial selection in cancer patients. Proceedings of the National Academy of Sciences of the United States of America. v. 108, p. 1-6, 2011. Qualis: A1
63.	Tahira, Ana C ; Kubrusly, Marcia S ; Faria, Michele F ; Dazzani, Bianca ; Fonseca, Rogerio S ; Maracaja-Coutinho, Vinicius ; VERJOVSKI-ALMEIDA, Sergio ; Machado, Marcel CC ; Reis, Eduardo M ; REIS, EM. Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. Molecular Cancer. v. 10, p. 141, 2011. Qualis: A1
64.	Trape, A. P. ; KATAYAMA, M. L. H. ; ROELA, R. A. ; BRENTANI, H. ; Ravacci, G. R. ; Lima, L. A. ; BRENTANI, M. M.. Gene expression profile in response to doxorubicin-rapamycin combined treatment of HER-2 overexpressing human mammary epithelial cell lines. Molecular Cancer Therapeutics. v. 11, p. 464-474, 2011. Qualis: A1
65.	VALENZUELA, Juan Carlos B. ; FUJITA, A ; HALCSIK, E. ; GRANJEIRO, J. M. ; SOGAYAR, Mari Cleide. Unveiling novel genes upregulated by both rhBMP2 and rhBMP7 during early osteoblastic transdifferentiation of C2C12 cells. BMC Research Notes. v. 4, p. 370, 2011. Qualis: B1
66.	Verjovski-Almeida, S. ; DEMARCO, Ricardo. Gene structure and splicing in schistosomes. Journal of Proteomics. v. 74, p. 1515-1518, 2011. Qualis: A1
67.	VIEIRA, R. F. C. ; BIONDO, A. W. ; GUIMARAES, A. M. S. ; Santos, A.P. ; SANTOS, R. P. ; DUTRA, L. H. ; DINIZ, P. P. ; de Morais, H. A. ; MESSICK, J. B. ; LABRUNA, M. B. ; VIDOTTO, O.. Ehrlichiosis in Brazil. Revista Brasileira de Parasitologia Veterinária (Impresso). v. 20, p. 1-12, 2011.Qualis: A2
68.	VIEIRA, R. F. C. ; Molento, M.B. ; GUIMARAES, A. M. S. ; Santos, A.P. ; Bonat, Marcelo ; JAVOROUSKI, M. L. ; POPP, L. ; SANTOS, L. C. ; MORAES, W. ; CUBAS, Z. S. ; VIEIRA, T. S. W. J. ; VIDOTTO, O. ; BARROS FILHO, I. R. ; BIONDO, A. W. ; MESSICK, J. B.. Use of a Mycoplasma suis-PCR protocol for screening a population of captive peccaries (Tayassu tajacu and Tayassu pecari). Revista Brasileira de Parasitologia Veterinária (Impresso). v. 20, p. 75-77, 2011.Qualis: A2
69.	Wibberg, Daniel ; Blom, Jochen ; Jaenicke, Sebastian ; Kollin, Florian ; Rupp, Oliver ; Scharf, Birgit ; Schneiker-Bekel, Susanne ; Sczcepanowski, Rafael ; Goesmann, Alexander ; Setubal, Joao Carlos ; Schmitt, Rüdiger ; Pühler, Alfred ; Schlüter, Andreas. Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology. v. 155, p. 50-62, 2011. Qualis: A3
70.	Yagura, Teiti ; Makita, Kazuo ; Yamamoto, Hiromasa ; Menck, Carlos F.M. ; Schuch, André P.. Biological Sensors for Solar Ultraviolet Radiation. Sensors (Basel). v. 11, p. 4277-4294, 2011. Qualis: A1
71.	YEPES, A. ; BUCKERIDGE, M. S.. Respuestas de las plantas ante los factores ambientales del cambio climático global. Revista IDEAS (Online). v. 14, p. 213-232, 2011.Qualis: C
72.	Zhang, Hongtao ; Setubal, Joao Carlos ; Zhan, Xiaobei ; Zheng, Zhiyong ; Yu, Lijun ; Wu, Jianrong ; Chen, Dingqiang. Component identification of electron transport chains in curdlan-producing Agrobacterium sp. ATCC 31749 and its genome-specific prediction using comparative genome and phylogenetic trees analysis. Journal of Industrial Microbiology & Biotechnology. v. 38, p. 667-677, 2011. Qualis: A3
73.	ZHANG, Y. E. ; VIBRANOVSKI, M. D. ; KRINSKY, B. H. ; LONG, M.. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics (Oxford. Print). v. 27, p. 1749-1753, 2011. Qualis: Não identificado (PRINT))
74.	ZHANG, YONG E. ; LANDBACK, PATRICK ; VIBRANOVSKI, MARIA D. ; LONG, MANYUAN. Accelerated Recruitment of New Brain Development Genes into the Human Genome. PLoS Biology (Online). v. 9, p. e1001179, 2011. Qualis: A1

2010

1.	Almeida, Nalvo F. ; Yan, Shuangchun ; Cai, Rongman ; Clarke, Christopher R. ; Morris, Cindy E. ; Schaad, Norman W. ; Schuenzel, Erin L. ; Lacy, George H. ; Sun, Xiaoan ; Jones, Jeffrey B. ; Castillo, Jose A. ; Bull, Carolee T. ; Leman, Scotland ; Guttman, David S. ; Setubal, João C. ; Vinatzer, Boris A.. PAMDB, A Multilocus Sequence Typing and Analysis Database and Website for Plant-Associated Microbes. Phytopathology. v. 100, p. 208-215, 2010. Qualis: A1
2.	Anantharaman, Vivek ; Abhiman, Saraswathi ; De Souza, Robson F. ; Aravind, L.. Comparative genomics uncovers novel structural and functional features of the heterotrimeric GTPase signaling system. Gene (Amsterdam). v. 475, p. 63-78, 2010. Qualis: A4
3.	Aravind, L ; De Souza, Robson F ; Iyer, Lakshminarayan M. Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis. Biology Direct. v. 5, p. 48, 2010. Qualis: Não identificado (BIOLOGY DIRECT)
4.	BALAJI, P. ; FENG, W. ; LIN, H. ; ARCHULETA, J. ; MATSUOKA, S. ; Warren, A. ; Setubal, J. ; Lusk, Ewing ; Thakur, R. ; Foster, I. ; Katz, D. S. ; Jha, S. ; Shinpaugh, K. ; Coghlan, S. ; Reed, D.. Global-scale distributed I/O with ParaMEDIC. Concurrency and Computation. v. 22, p. 2266-2281, 2010. Qualis: Não identificado (CONCURRENCY AND COMPUTATION)
5.	Baratti, Mariana O ; Moreira, Yuri B ; Traina, Fabiola ; Costa, Fernando F ; Verjovski-Almeida, Sergio ; Olalla-Saad, Sara T. Identification of protein-coding and non-coding RNA expression profiles in CD34+ and in stromal cells in refractory anemia with ringed sideroblasts. BMC Medical Genomics. v. 3, p. 30, 2010. Qualis: A3
6.	Bare, J.C. ; KOIDE, T. ; Reiss, D.J. ; Tenembaum, D. ; Baliga, N.S.. Integration and visualization of systems biology data in context of the genome. BMC Bioinformatics. v. 11, p. 382, 2010. Qualis: A1
7.	BARROS FILHO, M.C. ; KATAYAMA, M.L.H. ; BRENTANI, H. ; ABREU, A.P.S. ; BARBOSA, E.M. ; OLIVEIRA, C.T. ; GÓES, J.C.S. ; BRENTANI, M.M. ; FOLGUEIRA, M.A.A.K.. Gene trio signatures as molecular markers to predict response to doxorubicin cyclophosphamide neoadjuvant chemotherapy in breast cancerpatients. Brazilian journal of medical and biological research. v. 43, p. 1225-1231, 2010. Qualis: A4
8.	BERRA, C. M. ; MENCK CF ; MARTINEZ, G. R. ; OLIVEIRA, C. S. ; Baptista MS ; MASCIO, P.. Plasmid DNA damage induced by singlet molecular oxygen released from the naphthalene endoperoxide DHPNO2 and photoactivated methylene blue.. Química Nova (Online). v. 33, p. 279-283, 2010.Qualis: A4
9.	Biase, Fernando Henrique ; Martelli, Lúcia ; Puga, Renato ; Giuliatti, Silvana ; Santos-Biase, Weruska Karyna Freitas ; Fonseca Merighe, Giovana Krempel ; Meirelles, Flavio Vieira. Messenger RNA expression of Pabpnl1 and Mbd3l2 genes in oocytes and cleavage embryos. Fertility and Sterility. v. 93, p. 2507-2512, 2010. Qualis: A1
10.	BOCCARDO, E. ; Manzini Baldi, C. V. ; CARVALHO, A. F. ; RABACHINI, T. ; Torres, C. ; BARRETA, L. A. ; BRENTANI, H. ; VILLA, L. L.. Expression of human papillomavirus type 16 E7 oncoprotein alters keratinocytes expression profile in response to tumor necrosis factor- . Carcinogenesis (New York. Print). v. 31, p. 521-531, 2010. Qualis: Não identificado (PRINT))
11.	BUCKERIDGE, M. S. Seed Cell Wall Storage Polysaccharides: models to understand cell wall biosynthesis and degradation. Plant Physiology (Bethesda),. p. 1-7, 2010. Qualis: A1 (PLANT PHYSIOLOGY)
12.	BUCKERIDGE, M. S.; GONCALVES, J. F. C. ; LIM, R.B.S. ; FERNANDES, A. V. ; Borges, E.E.L.B.. Physiological and biochemical characterization of the assai palm (Euterpe oleracea Mart.) during seed germination and seedling growth under aerobic and anaerobic conditions. Revista Árvore (Impresso). v. 34, p. 1045-4053, 2010. Qualis: B2
13.	CARNEIRO-PROIETTI, A. B. ; SABINO, E. C. ; Sampaio, Divaldo ; Proietti, Fernando A. ; GONCALVES, T. T. ; OLIVEIRA, C. D. L. ; FERREIRA, J. E. ; Liu, Jing ; Schreiber, George B. ; Murphy, Edward L. ; BUSCH, M. P.. Demographic profile of blood donors at three major Brazilian blood centers: results from the International REDS-II study, 2007 to 2008. TRANSFUSION (ONLINE). v. 50, p. 918-925, 2010. Qualis: A3
14.	Carvalho, Helotonio ; Garrido, Leandro M. ; Furlan, Renata L. A. ; Padilla, Gabriel ; Agnoletto, Mateus ; Guecheva, Temenouga ; Henriques, João A. P. ; Saffi, Jenifer ; Menck, Carlos Frederico Martins. DNA damage induced by the anthracycline cosmomycin D in DNA repair-deficient cells. Cancer Chemotherapy and Pharmacology. v. 65, p. 989-994, 2010. Qualis: A2
15.	Chudzinski-Tavassi, Ana Marisa ; De-Sá-Júnior, Paulo Luis ; Simons, Simone Michaela ; Maria, Durvanei Augusto ; de Souza Ventura, Janaina ; de Fátima Correia Batista, Isabel ; Faria, Fernanda ; Durães, Esther ; REIS, Eduardo Moraes ; REIS, EM ; Demasi, Marilene. A new tick Kunitz type inhibitor, Amblyomin-X, induces tumor cell death by modulating genes related to the cell cycle and targeting the ubiquitin-proteasome system. Toxicon (Oxford),. p. June 1, 2010. Qualis: Não identificado (TOXICON ,)
16.	Cordenunsi, Beatriz ; Saura-Calixto, Fulgêncio ; Diaz-Rubio, Maria Elena ; Zuleta, Angela ; Tiné, Marco Aurélio ; Buckeridge, Marcos Silveira ; Silva, Giovanna Bezerra da ; Carpio, Cecilia ; Giuntini, Eliana Bistriche ; Menezes, Elizabete Wenzel de ; Lajolo, Franco. Carbohydrate composition of ripe pineapple (cv. perola) and the glycemic response in humans. Ciência e Tecnologia de Alimentos (Impresso). v. 30, p. 282-288, 2010. Qualis: B1 (CIENCIA E TECNOLOGIA DE ALIMENTOS)
17.	Cutiño-Jiménez, Ania M. ; Martins-Pinheiro, Marinalva ; Lima, Wanessa C. ; Martín-Tornet, Alexander ; Morales, Osleidys G. ; Menck, Carlos F.M.. Evolutionary placement of Xanthomonadales based on conserved protein signature sequences. Molecular Phylogenetics and Evolution (Print). v. 54, p. 524-534, 2010. Qualis: A1
18.	da Silva Neto, Jose F ; Koide, Tie ; Gomes, Suely L ; Marques, Marilis V. Global gene expression under nitrogen starvation in Xylella fastidiosa: contribution of the sigma54 regulon. BMC Microbiology (Online). v. 10, p. 231, 2010. Qualis: A2
19.	DaMatta, Fábio M. ; Grandis, Adriana ; Arenque, Bruna C. ; Buckeridge, Marcos S.. Impacts of climate changes on crop physiology and food quality. Food Research International. v. 43, p. 1814-1823, 2010. Qualis: A1
20.	de Souza, R. F.; Aravind, L.. UMA and MABP domains throw light on receptor endocytosis and selection of endosomal cargoes. Bioinformatics (Oxford). v. 26, p. 1477-1480, 2010. Qualis: A1
21.	De Souza, Robson F.; Iyer, Lakshminarayan M. ; Aravind, L.. Diversity and evolution of chromatin proteins encoded by DNA viruses. BBA-GENE REGUL MECH. v. 1799, p. 302-318, 2010. Qualis: Não identificado (BBA-GENE REGUL MECH)
22.	DEMARCO, R. ; Mathieson, W. ; Manuel, S. J. ; Dillon, G. P. ; Curwen, R. S. ; Ashton, P. D. ; Ivens, A. C. ; Berriman, M. ; Verjovski-Almeida, S. ; Wilson, R. A.. Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts. Genome Research. v. 20, p. 1112-1121, 2010. Qualis: A1
23.	DENTILLO, D. B. ; Meola, J. ; Rosa e Silva, J. C. ; GIULIATTI, S. ; SILVA, W. A. ; FERRIANI, R. A. ; Martelli, L.. Deregulation of LOXL1 and HTRA1 Gene Expression in Endometriosis. Reproductive Sciences (Thousand Oaks, Calif.). v. 17, p. 1016-1023, 2010. Qualis: A2
24.	Facciotti, Marc T ; Pang, Wyming L ; Lo, Fang-yin ; Whitehead, Kenia ; KOIDE, T. ; Masumura, Ken-ichi ; Pan, Min ; Kaur, Amardeep ; Larsen, David J ; Reiss, David J ; Hoang, Linh ; Kalisiak, Ewa ; Northen, Trent ; Trauger, Sunia A ; Siuzdak, Gary ; Baliga, Nitin S. Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis. BMC Systems Biology. v. 4, p. 64, 2010. Qualis: A1
25.	Ferreira, Elisa N. ; Maschietto, Mariana ; Silva, Sabrina D. ; BRENTANI, HELENA ; Carraro, Dirce M.. Evaluation of Quantitative RT-PCR Using Nonamplified and Amplified RNA. Diagnostic Molecular Pathology (Print). v. 19, p. 45-53, 2010. Qualis: Não identificado (DIAGNOSTIC MOLECULAR PATHOLOGY)
26.	Fogaça, Andréa C. ; ZAINI, Paulo A. ; Wulff, Nelson A. ; da Silva, Patrícia I.P. ; Fázio, Marcos A. ; Miranda, Antônio ; Daffre, Sirlei ; da Silva, Aline M.. Effects of the antimicrobial peptide gomesin on the global gene expression profile, virulence and biofilm formation of. FEMS Microbiology Letters. v. 306, p. 152-159, 2010. Qualis: B2
27.	Freschi, L. ; Rodrigues, M. A. ; Domingues, D. S. ; Purgatto, E. ; Van Sluys, M. A. ; Magalhaes, J. R. ; Kaiser, W. M. ; Mercier, H.. Nitric Oxide Mediates the Hormonal Control of Crassulacean Acid Metabolism Expression in Young Pineapple Plants. Plant Physiology (Bethesda). v. 152, p. 1971-1985, 2010. Qualis: A1
28.	FUJITA, A.; Kojima, K. ; PATRIOTA, A. G. ; Sato, J. R. ; SEVERINO, P. ; Miyano, S.. A fast and robust statistical test based on Likelihood ratio with Bartlett correction to identify Granger causality between gene sets. Bioinformatics (Oxford. Print). v. 26, p. 2349-2351, 2010. Qualis: Não identificado (PRINT))
29.	FUJITA, A.; Nagasaki, M. ; Imoto, S. ; SAITO, A. ; IKEDA, E. ; Shimamura, T. ; Yamaguchi, Rui ; HAYASHIZAKI, Y. ; Miyano, Satoru. Comparison of gene expression profiles produced by CAGE, illumina microarray and Real Time RT-PCR.. Genome Informatics. v. 24, p. 56-68, 2010.Qualis: Não identificado (GENOME INFORMATICS)
30.	FUJITA, A; SEVERINO, P. ; Sato, Joao R ; Miyano, Satoru. Granger causality in systems biology: modeling gene networks in time series microarray data using vector autoregressive models. Lecture Notes in Computer Science. v. 6268, p. 13-24, 2010. Qualis: C
31.	Fujita, André; SATO, João Ricardo ; KOJIMA, KANAME ; GOMES, LUCIANA RODRIGUES ; NAGASAKI, MASAO ; SOGAYAR, Mari Cleide ; Miyano, Satoru. IDENTIFICATION OF GRANGER CAUSALITY BETWEEN GENE SETS. Journal of Bioinformatics and Computational Biology (Print). v. 08, p. 679, 2010. Qualis: B1
32.	Gomes, Verônica Souza da Mota ; Buckeridge, Marcos S. ; Silva, Clóvis Oliveira ; Scarano, Fábio Rubio ; Araujo, Dorothy Sue Dunn ; Alves, Maria Alice S.. Availability peak of caloric fruits coincides with energy-demanding seasons for resident and non-breeding birds in restinga, an ecosystem related to the Atlantic forest, Brazil. Flora (Jena). v. 205, p. 647-655, 2010. Qualis: A3
33.	Grandis, Adriana ; Godoi, Simone ; Buckeridge, Marcos S.. Respostas fisiológicas de plantas amazônicas de regiões alagadas às mudanças climáticas globais. Brazilian Journal of Botany. v. 33, p. 1-12, 2010. Qualis: B1
34.	Guimaraes, A.M.S.; Brandão, P.E. ; MORAES, W. ; Kiihl, S. ; Santos, L.C. ; FILONI, C. ; Cubas, Z.S. ; Robes, R.R. ; Marques, L.M. ; Neto, R.L.. Detection of Bartonella spp. in neotropical felids and evaluation of risk factors and hematological abnormalities associated with infection. Veterinary Microbiology (Amsterdam. Print). v. 142, p. 346-351, 2010. Qualis: Não identificado (PRINT))
35.	Harwich, Michael D ; Alves, Joao M ; Buck, Gregory A ; Strauss, Jerome F ; Patterson, Jennifer L ; Oki, Aminat T ; Girerd, Philippe H ; Jefferson, Kimberly K. Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies. BMC Genomics. v. 11, p. 375-387, 2010. Qualis: A2
36.	Hotta, Carlos T. ; Souza, Amanda P. ; Margarido, Gabriel R. A. ; Sluys, Marie-Anne ; GARCIA, ANTôNIO A. F. ; Domingues, Douglas S. ; Mollinari, Marcelo ; Ochoa, Edgar A. ; Carrer, Helaine ; Melotto-Passarin, Danila M. ; Hoshino, Andrea A. ; Souza, Glaucia M. ; Santos, Melissa O. ; Menossi, Marcelo ; Souza, Anete P. ; Santos, Wanderley D. ; Marconi, Thiago G. ; CRIVELLARI, AUGUSTO CéSAR ; Buckeridge, Marcos S. ; Cruz, Guilherme M. Q. ; et.al. The Biotechnology Roadmap for Sugarcane Improvement. Tropical Plant Biology (Online). v. 3, p. 75-87, 2010. Qualis: A3
37.	HÜNEMEIER, T.; ACUNA-ALONZO, V. ; SALZANO, F. M. ; BORTOLINI, M. C. ; CANIZALES-QUINTEROS, S.. A functional ABCA1 gene variant is associated with low HDL-cholesterol levels and shows evidence of positive selection in Native Americans. Human Molecular Genetics (Print). v. 19, p. 2877-2885, 2010. Qualis: A1
38.	HÜNEMEIER, T.; Ruiz-Linares, Andres ; Silveira, Álvaro ; Paixão-Côrtes, Vanessa Rodrigues ; Salzano, Francisco M. ; Bortolini, Maria Cátira. Brief communication: Population data support the adaptive nature of HACNS1 sapiens/neandertal-chimpanzee differences in a limb expression domain. American Journal of Physical Anthropology,. p. n/a-n/a, 2010. Qualis: A2 (AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY)
39.	Iyer, L. M. ; Abhiman, S. ; de Souza, R. F. ; Aravind, L.. Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase. Nucleic Acids Research,. p. gkq265, 2010. Qualis: A1 (NUCLEIC ACIDS RESEARCH)
40.	Kamenetzky, L. ; Asis, R. ; Bassi, S. ; de Godoy, F. ; Bermudez, L. ; Fernie, A. R. ; Van Sluys, M. A. ; Vrebalov, J. ; Giovannoni, J. J. ; ROSSI, M. ; Carrari, F.. Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits. Plant Physiology (Bethesda). v. 152, p. 1772-1786, 2010. Qualis: A1
41.	Lang, Jillian M. ; Hamilton, John P. ; Diaz, Maria Genaleen Q. ; Van Sluys, Marie Anne ; Burgos, Ma. Ruby G. ; Vera Cruz, Casiana M. ; Buell, C. Robin ; Tisserat, Ned A. ; Leach, Jan E.. Genomics-Based Diagnostic Marker Development for pv. and pv.. Plant Disease. v. 94, p. 311-319, 2010. Qualis: A2
42.	MACHADO-LIMA, A. ; KASHIWABARA, A. Y. ; DURHAM, A. M.. Decreasing the number of false positives in sequence classification. BMC GENOMICS. v. 11, p. S7, 2010. Qualis: A2
43.	Manicassamy, S. ; Reizis, B. ; Ravindran, R. ; Nakaya, H. ; Salazar-Gonzalez, R. M. ; Wang, Y.-c. ; Pulendran, B.. Activation of -Catenin in Dendritic Cells Regulates Immunity Versus Tolerance in the Intestine. Science (New York, N.Y.). v. 329, p. 849-853, 2010. Qualis: A1
44.	Mantzouranis, Luciana ; Bagattini, Raquel ; Souza, Glaucia M. KeaA, a Dictyostelium kelch-domain protein that regulates the response to stress and development. BMC Developmental Biology (Online). v. 10, p. 79, 2010. Qualis: B1
45.	Marques, Lucas ; Ueno, Priscilla M ; Buzinhani, Melissa ; Cortez, Beatriz A ; Neto, Renata L ; Yamaguti, Maurício ; Oliveira, Rosângela C ; GUIMARAES, A. M. S. ; Monezi, Telma A ; Braga, Antonio ; Machado-Santelli, Gláucia M ; Timenetsky, Jorge. Invasion of Ureaplasma diversum in Hep-2 cells. BMC Microbiology (Online). v. 10, p. 83, 2010. Qualis: A2
46.	Meola, Juliana ; Rosa e Silva, Júlio César ; Dentillo, Daniel Blassioli ; da Silva, Wilson Araújo ; Veiga-Castelli, Luciana Caricati ; de Souza Bernardes, Luciano Angelo ; Ferriani, Rui Alberto ; de Paz, Claudia Cristina Paro ; Giuliatti, Silvana ; Martelli, Lúcia. Differentially expressed genes in eutopic and ectopic endometrium of women with endometriosis. Fertility and Sterility. v. 93, p. 1750-1773, 2010. Qualis: A1
47.	Moreira, Leandro M ; Almeida, Nalvo F ; Potnis, Neha ; DIGIAMPIETRI, L. A. ; Adi, Said S ; Bortolossi, Julio C ; da Silva, Ana C ; da Silva, Aline M ; de Moraes, Fabricio E ; de Oliveira, Julio C ; de SOUZA, Robson Francisco ; Fancincani, Agda P ; Ferraz, Andre L ; Ferro, Maria I ; Furlan, Luiz R ; Gimenez, Daniele F ; Jones, Jeffrey B ; Kitajima, Elliot W ; Laia, Marcelo L ; Leite, Rui P ; et.al. Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC GENOMICS. v. 11, p. 238, 2010. Qualis: A2
48.	Moreira, Leandro M ; de Laia, Marcelo L ; De Souza, Robson F ; Zaini, Paulo A ; da Silva, Ana CR ; da Silva, Aline M ; Ferro, Jesus A. Development and validation of a Xanthomonas axonopodis pv. citri DNA microarray platform (XACarray) generated from the shotgun libraries previously used in the sequencing of this bacterial genome. BMC Research Notes. v. 3, p. 150, 2010. Qualis: B1
49.	NIIDA, A. ; Imoto, S. ; Yamaguchi, R. ; Nagasaki, M. ; FUJITA, A. ; Shimamura, T. ; Miyano, S.. Model-free unsupervised gene set screening based on information enrichment in expression profiles. Bioinformatics (Oxford. Print). v. 26, p. 3090-3097, 2010. Qualis: Não identificado (PRINT))
50.	Nishiyama-Junior, M. Y. ; VICENTE, F. F. R. ; Lembke, Carolina G ; Sato, Paloma M. ; Costa, M. D-B. C. ; DAL-BIANCO, M. L. ; ANDRADE, R. F. ; Hotta, Carlos T. ; SOUZA, GLAUCIA MENDES. The SUCEST-FUN Regulatory Network Database: Designing and Energy Grass. Sugar Cane International. v. 27, p. 1-15, 2010.Qualis: Não identificado (SUGAR CANE INTERNATIONAL)
51.	OIKAWA, M. K. ; MERINO, E. F. ; FERNANDEZ-BECERRA, C. ; WUNDERLICH, G. ; VILLALOBOS, J. M. ; SILVA, P. P. S. B. ; BARRERA, J. ; DURHAM, A. M. ; DELPORTILLO, H. A. ; FERREIRA, J. E.. CLINMALDB: A Clinical Field-Research Oriented Relational Database to Study Human Malaria. IADIS International Journal on WWWInternet. v. 8, p. 181-191, 2010.Qualis: C (IADIS INTERNATIONAL JOURNAL ON WWW/INTERNET)
52.	Oliveira Júnior, Clóvis J. F. ; Cavalari, Aline A. ; Carpita, Nicholas C. ; Buckeridge, Marcos S. ; Braga, Marcia R.. Cell wall polysaccharides from cell suspension cultures of the Atlantic Forest tree Rudgea jasminoides (Rubiaceae). Trees (Berlin. Print). v. 24, p. 713-722, 2010. Qualis: Não identificado (PRINT))
53.	OLIVEIRA, LARIZA L. DE ; PERSINOTI, GABRIELA F. ; Giuliatti, Silvana ; TINÓS, RENATO. Feature Selection via Genetic Algorithms in the Classification of Anti-Snake Venom Medicinal Plants. LEARNING AND NONLINEAR MODELS. v. 8, p. 125-134, 2010. Qualis: B2
54.	Oliveira, S.T. ; MESSICK, J. B. ; BIONDO, A. W. ; Santos, A.P. ; GUIMARAES, A. M. S. ; MOHAMED, A. ; Pires Neto, J.A.S. ; Dalmonin, M.L. ; GONZALEZ, F. H. D.. Serum and Urinary C-Reactive Protein Concentrations in Dogs with Leptospirosis. Acta Scientiae Veterinariae (Online). v. 38, p. 243-247, 2010.Qualis: B1
55.	Olivero, Ofelia A. ; Larramendy, Marcelo ; Soloneski, Sonia ; Menck, Carlos F.M. ; Matta, Jaime ; Folle, Gustavo A. ; Zamorano-Ponce, Enrique ; Spivak, Graciela. Impact of EMS outreach: Successful developments in Latin America. Environmental and Molecular Mutagenesis,. p. NA-NA, 2010. Qualis: A3 (ENVIRONMENTAL AND MOLECULAR MUTAGENESIS)
56.	Pulendran, Bali ; Li, Shuzhao ; Nakaya, Helder I.. Systems Vaccinology. Immunity (Cambridge, Mass.). v. 33, p. 516-529, 2010. Qualis: A1
57.	ROZENCHAN, P. B. ; CARRARO, D. M. ; BRENTANI, H. P. ; MOTA, L. D. ; BASTOS, E. P. ; FERREIRA, E. N. E. ; TORRES, C. H. ; KATAYAMA, M. L. H. ; ROELA, R. A. ; LYRA, E. C. ; SOARES, F. A. ; FOLGUEIRA, M. A. A. K. ; GOES, J. C. G. S. ; BRENTANI, M. M.. Reciprocal changes in gene expression profiles of cocultured breast epithelial cells and primary fibroblasts. International Journal of Cancer (Print). v. 125, p. 2767-2777, 2010. Qualis: A1
58.	Saffi, Jenifer ; Agnoletto, Mateus H. ; Guecheva, Temenouga N. ; Batista, Luís F.Z. ; Carvalho, Helotonio ; Henriques, João A.P. ; Stary, Anne ; Menck, Carlos F.M. ; Sarasin, Alain. Effect of the anti-neoplastic drug doxorubicin on XPD-mutated DNA repair-deficient human cells. DNA Repair (Print). v. 9, p. 40-47, 2010. Qualis: A1
59.	Sato, João R. ; Fujita, André ; Cardoso, Elisson F. ; Thomaz, Carlos E. ; Brammer, Michael J. ; Amaro Jr., Edson. Analyzing the connectivity between regions of interest: An approach based on cluster Granger causality for fMRI data analysis. NeuroImage (Orlando). v. 52, p. 1444-1455, 2010. Qualis: A1
60.	Schuch, André Passaglia ; Menck, Carlos Frederico Martins. The genotoxic effects of DNA lesions induced by artificial UV-radiation and sunlight. Journal of Photochemistry and Photobiology. B, Biology. v. 99, p. 111-116, 2010. Qualis: Não identificado (B, BIOLOGY)
61.	Sebollela, Adriano ; Freitas-Corrêa, Léo ; Oliveira, Fábio F. ; Mendes, Camila T. ; Wasilewska-Sampaio, Ana Paula ; Camacho-Pereira, Juliana ; Galina, Antonio ; BRENTANI, HELENA ; Passetti, Fabio ; Felice, Fernanda G. ; Dias-Neto, Emmanuel ; Ferreira, Sérgio T.. Expression Profile of Rat Hippocampal Neurons Treated with the Neuroprotective Compound 2,4-Dinitrophenol: Up-Regulation of cAMP Signaling Genes. Neurotoxicity Research. v. 18, p. 112-123, 2010. Qualis: A3
62.	Shimamura, T. ; Imoto, S. ; Nagasaki, M. ; YAMAUCHI, M. ; Yamaguchi, Rui ; FUJITA, A. ; Tamada, Y. ; GOTOH, N. ; Miyano, Satoru. Collocation-based sparse estimation for constructing dynamic gene networks. Genome Informatics. v. 24, p. 164-178, 2010.Qualis: Não identificado (GENOME INFORMATICS)
63.	Shulaev, Vladimir ; Sargent, Daniel J ; Crowhurst, Ross N ; Mockler, Todd C ; Folkerts, Otto ; Delcher, Arthur L ; Jaiswal, Pankaj ; Mockaitis, Keithanne ; Liston, Aaron ; Mane, Shrinivasrao P ; Burns, Paul ; Davis, Thomas M ; Slovin, Janet P ; Bassil, Nahla ; Hellens, Roger P ; Evans, Clive ; Harkins, Tim ; Kodira, Chinnappa ; Desany, Brian ; SETUBAL, J. C. ; et.al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics (Print). v. 43, p. 109-116, 2010. Qualis: A1
64.	Soccol, Carlos Ricardo ; Vandenberghe, Luciana Porto de Souza ; Medeiros, Adriane Bianchi Pedroni ; Karp, Susan Grace ; Buckeridge, Marcos ; Ramos, Luiz Pereira ; Pitarelo, Ana Paula ; Ferreira-Leitão, Viridiana ; Gottschalk, Leda Maria Fortes ; Ferrara, Maria Antonieta. Bioethanol from lignocelluloses: Status and perspectives in Brazil. Bioresource Technology. v. 101, p. 4820-4825, 2010. Qualis: A1
65.	SOLER, J. M. P.; Giolo, S.R. ; PEREIRA, A. C. ; de Andrade, M. ; KRIEGER, J. E.. Evaluating gene by sex and age interactions on cardiovascular risk factors in Brazilian families. BMC Medical Genetics (Online). v. 11, p. 132, 2010. Qualis: A4
66.	Souza, Beatriz M. ; Molfetta-Machado, Jeanne B. ; Freschi, Luciano ; Figueira, Antonio ; Purgatto, Eduardo ; Buckeridge, Marcos S. ; Sluys, Marie-Anne ; Mercier, Helenice. Axillary bud development in pineapple nodal segments correlates with changes on cell cycle gene expression, hormone level, and sucrose and glutamate contents. In Vitro Cellular & Developmental Biology-Plant. v. 46, p. 281-288, 2010. Qualis: A4 (IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY. PLANT)
67.	Tang, Hua ; Cao, Weiping ; Kasturi, Sudhir Pai ; Ravindran, Rajesh ; Nakaya, Helder I ; Kundu, Kousik ; Murthy, Niren ; Kepler, Thomas B ; Malissen, Bernard ; Pulendran, Bali. The T helper type 2 response to cysteine proteases requires dendritic cell¿basophil cooperation via ROS-mediated signaling. Nature Immunology. v. 11, p. 608-617, 2010. Qualis: A1
68.	Teixeira, Andre Azevedo Reis ; LUND, Mikael ; Da SILVA, F. L. B.. Fast Proton Titration Scheme for Multiscale Modeling of Protein Solutions. Journal of Chemical Theory and Computation. v. 6, p. 3259-3266, 2010. Qualis: A1
69.	Tiller, R. V. ; Gee, J. E. ; Frace, M. A. ; Taylor, T. K. ; SETUBAL, J. C. ; Hoffmaster, A. R. ; De, B. K.. Characterization of novel Brucella strains originating from wild native rodent species in North Queensland, Australia. Applied and Environmental Microbiology (Print). v. 76, p. 5837-5845, 2010. Qualis: A1
70.	TONINI, P. P. ; Purgatto, E. ; BUCKERIDGE, M. S.. Effects of abscisic acid, ethylene and sugars on the mobilization of storage proteins and carbohydrates in seeds of the tropical tree Sesbania virgata (Leguminosae). Annals of Botany (Print). v. 106, p. 607-616, 2010. Qualis: A1
71.	Tonini, Patricia P. ; Carrara, Thalita B. ; Buckeridge, Marcos S.. Storage proteins and cell wall mobilisation in seeds of Sesbania virgata (Cav.) Pers. (Leguminosae). Trees (Berlin. Print). v. 24, p. 675-684, 2010. Qualis: Não identificado (PRINT))
72.	TORTO-ALALIBO, T. ; Collmer, C. W. ; GWINN-GIGLIO, M. ; Lindeberg, M. ; Meng, S. ; Chibucos, M. C. ; Tseng, T.-T. ; Lomax, J. ; Biehl, B. ; Ireland, A. ; Bird, D. ; Dean, R. A. ; Glasner, J. D. ; PERNA, N. ; SETUBAL, J. C. ; COLLMER, A. ; Tyler, B. M.. Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology. Microbiology and Molecular Biology Reviews. v. 74, p. 479-503, 2010. Qualis: Não identificado (MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS)
73.	Ullmann, Leila Sabrina ; da Silva, Rodrigo Costa ; de Moraes, Wanderlei ; Cubas, Zalmir Silvino ; dos Santos, Leonilda Correia ; Hoffmann, Juliano Leônidas ; Moreira, Nei ; Guimaraes, Ana Marcia Sa ; Montaño, Patrícia ; Langoni, Helio. Serological survey of Toxoplasma gondii in captive Neotropical felids from Southern Brazil. Veterinary Parasitology (Print). v. 172, p. 144-146, 2010. Qualis: A1
74.	Venancio, Thiago M. ; Wilson, R. Alan ; Verjovski-Almeida, Sergio ; DEMARCO, Ricardo. Bursts of transposition from non-long terminal repeat retrotransposon families of the RTE clade in Schistosoma mansoni. International Journal for Parasitology. v. 40, p. 743-749, 2010. Qualis: A1
75.	VIBRANOVSKI, M. D.; CHALOPIN, D.S. ; LOPES, H. F. ; LONG, M. ; KARR, T. L.. Direct Evidence for Postmeiotic Transcription During Drosophila melanogaster Spermatogenesis. Genetics (Austin, Tex.). v. 186, p. 431-433, 2010. Qualis: A2
76.	Waclawovsky, Alessandro J. ; Sato, Paloma M. ; Lembke, Carolina G. ; Moore, Paul H. ; Souza, Glaucia M.. Sugarcane for bioenergy production: an assessment of yield and regulation of sucrose content. Plant Biotechnology Journal. v. 8, p. 263-276, 2010. Qualis: A1
77.	Wang, Jianping ; Roe, Bruce ; Macmil, Simone ; Yu, Qingyi ; Murray, Jan ; Tang, Haibao ; Chen, Cuixia ; Najar, Fares ; Wiley, Graham ; Bowers, John ; Van Sluys, Marie-Anne ; Rokhsar, Daniel S ; Hudson, Matthew E ; Moose, Stephen P ; Paterson, Andrew H ; Ming, Ray. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC Genomics. v. 11, p. 261, 2010. Qualis: A2
78.	Warren, Andrew S ; Archuleta, Jeremy ; Feng, Wu-chun ; Setubal, Joao Carlos. Missing genes in the annotation of prokaryotic genomes. BMC BIOINFORMATICS. v. 11, p. 131, 2010. Qualis: A1
79.	ZHANG, Y. E. ; VIBRANOVSKI, M. D. ; KRINSKY, B. H. ; LONG, M.. Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Research. v. 20, p. 1526-1533, 2010. Qualis: A1
80.	ZHANG, YONG E. ; VIBRANOVSKI, MARIA D. ; LANDBACK, PATRICK ; MARAIS, GABRIEL A. B. ; LONG, MANYUAN. Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome. PLoS Biology (Online). v. 8, p. e1000494, 2010. Qualis: A1

2009

1.	ALMEIDA, F. M. ; BONINI, B. M. ; BETON, Daniela ; Jorge, J.A. ; TERENZI, H. F. ; DA SILVA, A. M.. Heterologous expression in Escherichia coli of Neurospora crassa neutral trehalase as an active enzyme. Protein Expression and Purification. v. 65, p. 185-189, 2009. Qualis: B2
2.	Almeida, Nalvo F. ; Yan, Shuangchun ; Lindeberg, Magdalen ; Studholme, David J. ; Schneider, David J. ; Condon, Bradford ; Liu, Haijie ; Viana, Carlos J. ; Warren, Andrew ; Evans, Clive ; Kemen, Eric ; MacLean, Dan ; Angot, Aurelie ; Martin, Gregory B. ; Jones, Jonathan D. ; Collmer, Alan ; Setubal, Joao C. ; Vinatzer, Boris A.. A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv. tomato DC3000. Molecular Plant-Microbe Interactions. v. 22, p. 52-62, 2009. Qualis: A1
3.	AMARAL, L. I. V. ; Cortelazzo, Ângelo L. ; BUCKERIDGE, M. S. ; PEREIRA, L. A. R.. Anatomical and biochemical changes in the composition of developing seed coats of annatto (Bixa orellana L.). Trees (Berlin). v. 23, p. 287-293, 2009. Qualis: A2
4.	ANEAS, I. ; Rodrigues, MV ; Pauletti, BA ; Silva, GJJ ; Carmona, R ; Cardoso, L ; Kwitek, AE ; Jacob, HJ ; SOLER, J. M. P. ; KRIEGER, J. E.. Congenic strains provide evidence that four mapped loci in chromosomes 2, 4, and 16 influence hypertension in the SHR. Physiological Genomics (Print). v. 3, p. 52-57, 2009.Qualis: A3
5.	Arashiro, P. ; Eisenberg, I. ; Kho, A. T. ; Cerqueira, A. M. P. ; Canovas, M. ; Silva, H. C. A. ; Pavanello, R. C. M. ; Verjovski-Almeida, S. ; Kunkel, L. M. ; ZATZ, M.. Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers. PNAS. Proceedings of the National Academy of Sciences of the United States of America. v. 106, p. 6220-6225, 2009. Qualis: A1
6.	Batista, L. F.Z. ; Roos, W. P. ; KAINA, B. ; Menck, C. F.M.. p53 Mutant Human Glioma Cells Are Sensitive to UV-C-Induced Apoptosis Due to Impaired Cyclobutane Pyrimidine Dimer Removal. Molecular Cancer Research. v. 7, p. 237-246, 2009. Qualis: A2
7.	Batista, Luís F.Z. ; Kaina, Bernd ; Meneghini, Rogério ; Menck, Carlos F.M.. How DNA lesions are turned into powerful killing structures: Insights from UV-induced apoptosis. Mutation Research. Reviews in Mutation Research. v. 681, p. 197-208, 2009. Qualis: Não identificado (REVIEWS IN MUTATION RESEARCH)
8.	BETTONI, F. ; CAMARGO FILHO, F. ; GROSSO, D. M. ; GALANTE, P. A. F. ; PARMIGIANI, R. B. ; GERALDO, M. V. ; SILVA, F. H. ; OBA-SHINJO, S. M. ; MARIE, S. K. M. ; SOARES, F. A. ; BRENTANI, H. P. ; SIMPSON, A. J. G. ; DE SOUZA, S. J. ; CAMARGO, A. A.. Identification of FAM46D as a novel cancer/testis antigen using EST data and serological analysis. Genomics (San Diego). v. 94, p. 153-160, 2009. Qualis: A3
9.	BIONDO, A. W. ; Santos, A.P. ; GUIMARAES, A. M. S. ; VIEIRA, R. F. C. ; VIDOTTO, O. ; MACIEIRA, D. ; Almosny, N.R.P. ; Molento, Marcelo B. ; TIMENETSKY, J. ; de Morais, H. A. ; GONZALEZ, F. H. D. ; MESSICK, J. B.. A review of the occurrence of hemoplasmas (hemotrophic mycoplasmas) in Brazil.. Revista Brasileira de Parasitologia Veterinária. v. 18, p. 1-7, 2009.Qualis: A2
10.	CALMON, M. F. ; RODRIGUES, R. V. ; KANETO, C. M. ; MOURA, R. P. ; SILVA, S. D. ; MOTA, L. D. C. ; PINHEIRO, D. G. ; TORRES, C. H. ; CARVALHO, A. F. ; CURY, P. M. ; NUNES, F. D. ; NISHIMOTO, I. N. ; SOARES, F. A. ; SILVA, A. M. ; KOWALSKI, L. P. ; BRENTANI, H. ; ZANELLI, C. ; SILVA, W. A. ; RAHAL, P. ; TAJARA, H. H. ; et.al. Epigenetic silencing of CRABP2 and MX1 in head and neck tumors. Neoplasia (New York, N.Y.). v. 11, p. 1329-1339, 2009. Qualis: A2
11.	Castelli, Erick C. ; Moreau, Philippe ; Chiromatzo, Alynne Oya e ; Mendes-Junior, Celso Teixeira ; Veiga-Castelli, Luciana C. ; Yaghi, Layale ; Giuliatti, Silvana ; Carosella, Edgardo D. ; Donadi, Eduardo Antonio. In silico analysis of microRNAS targeting the HLA-G 3⿲ untranslated region alleles and haplotypes. Human Immunology. v. 70, p. 1020-1025, 2009. Qualis: B1
12.	Chibucos, Marcus C. ; Tseng, Tsai-Tien ; Setubal, João C.. Describing commonalities in microbial effector delivery using the Gene Ontology. Trends in Microbiology. v. 17, p. 312-319, 2009. Qualis: A1
13.	Corrêa Soares, Juliana B. R. ; Menezes, Diego ; Vannier-Santos, Marcos A. ; Ferreira-Pereira, Antonio ; Almeida, Giulliana T. ; Venancio, Thiago M. ; Verjovski-Almeida, Sergio ; Zishiri, Vincent K. ; Kuter, David ; Hunter, Roger ; Egan, Timothy J. ; Oliveira, Marcus F.. Interference with Hemozoin Formation Represents an Important Mechanism of Schistosomicidal Action of Antimalarial Quinoline Methanols. Plos Neglected Tropical Diseases. v. 3, p. e477, 2009. Qualis: A1
14.	da Cunha, J. P. C. ; Old, L. J. ; Caballero, O. ; de SOUZA, Robson Francisco ; de Souza, J. E. ; de Souza, S. J. ; Ohara, D. T. ; Gama-Rodrigues, J. ; Oba-Shinja, S. M. ; Galante, P. A. F. ; Stransky, B. ; Simpson, A. J. ; Carvalho, P. M. ; SILVA, W. A. ; Moura, R. P. ; Moore, J. ; marie sk ; Habr-Gama, A. ; Pieprzyk, M. ; et.al. Bioinformatics construction of the human cell surfaceome. Proceedings of the National Academy of Sciences of the United States of America (Online). v. 106, p. 16752-16757, 2009. Qualis: A1
15.	da Silva, Fernando Luís Barroso; JÖNSSON, Bo. Polyelectrolyte¿protein complexation driven by charge regulation. Soft Matter. v. 5, p. 2862-2868, 2009. Qualis: A2
16.	de Setta, Nathalia ; Van Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia MA. Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila. BMC Evolutionary Biology (Online). v. 9, p. 279, 2009. Qualis: A1
17.	De Souza, Robson F; Iyer, Lakshminarayan M ; Aravind, L. The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains. Biology Direct. v. 4, p. 25, 2009. Qualis: Não identificado (BIOLOGY DIRECT)
18.	DEMARCO, Ricardo ; Verjovski-Almeida, S.. Schistosomes - proteomics studies for potential novel vaccines and drug targets. Drug Discovery Today. v. 14, p. 472-478, 2009. Qualis: A1
19.	DIAS-NETO, Emmanuel ; Nunes, Diana N. ; Giordano, Ricardo J. ; Sun, Jessica ; Botz, Gregory H. ; Yang, Kuan ; Setubal, João C. ; Pasqualini, Renata ; Arap, Wadih ; HO, Paulo Lee. Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis. Plos One. v. 4, p. e8338, 2009. Qualis: A1
20.	Diogo, Luciana C. ; Fernandes, Renata S. ; Marcussi, Silvana ; Menaldo, Danilo L. ; Roberto, Patrí­cia G. ; Matrangulo, Paula V. F. ; Pereira, Paulo S. ; França, Suzelei C. ; Giuliatti, Silvana ; Soares, Andreimar M. ; Lourenço, Miriam V.. Inhibition of Snake Venoms and Phospholipases A 2 by Extracts from Native and Genetically Modified Eclipta alba : Isolation of Active Coumestans. Basic & Clinical Pharmacology & Toxicology (Print). v. 104, p. 293-299, 2009. Qualis: A3
21.	DURHAM, A. M.; ARAUJO, F.M. ; MACHADO-LIMA, A. ; TEIXEIRA, R. ; OLIVEIRA, G.. Sequence and structural analysis of the 5- noncoding region of hepatitis C virus in patients with chronic infection. Journal of Medical Virology. v. 81, p. 1212-1219, 2009. Qualis: B1
22.	Felix, Juliana ; Papini-Terzi, Flávia Stal ; Rocha, Flávia Riso ; Vêncio, Ricardo Zorzetto Nicoliello ; Vicentini, Renato ; Nishiyama, Milton Yutaka ; César Ulian, Eugênio ; Souza, Gláucia Mendes ; Menossi, Marcelo. Expression Profile of Signal Transduction Components in a Sugarcane Population Segregating for Sugar Content. Tropical Plant Biology (Print). v. 2, p. 98-109, 2009. Qualis: A3
23.	Ferrari, M F R ; Reis, E M ; Matsumoto, J P P ; Fior-Chadi, D R. Transcriptome analysis of nicotine-exposed cells from the brainstem of neonate spontaneously hypertensive and Wistar Kyoto rats. The Pharmacogenomics Journal. v. 10, p. 134-160, 2009. Qualis: A2 (PHARMACOGENOMICS JOURNAL)
24.	Ferrari, Merari F. R. ; Reis, Eduardo M. ; REIS, EM ; Matsumoto, João P. P. ; Fior-Chadi, Débora R.. Gene Expression Profiling of Cultured Cells From Brainstem of Newborn Spontaneously Hypertensive and Wistar Kyoto Rats. Cellular and Molecular Neurobiology. v. 29, p. 287-308, 2009. Qualis: A2
25.	Ferreira, C. d. S. ; Piedade, M. T. F. ; Tine, M. A. S. ; Rossatto, D. R. ; Parolin, P. ; BUCKERIDGE, M. S.. The role of carbohydrates in seed germination and seedling establishment of Himatanthus sucuuba, an Amazonian tree with populations adapted to flooded and non-flooded conditions. Annals of Botany (Print). v. 104, p. 1111-1119, 2009. Qualis: A1
26.	FOLGUEIRA, M. A. A. K. ; BRENTANI, H. P. ; CARRARO, D. M. ; BARROS FILHO, M. C. ; KATAYAMA, M. L. H. ; ABREU, A. P. S. ; BARBOSA, E. M. ; OLIVEIRA, C. T. ; PATRÃO, D. F. C. ; MOTA, L. D. ; MOURÃO NETO, M. ; CALDEIRA, J. R. F. ; BRENTANI, M. M.. Gene expression profile of residual breast cancer after doxorubicin and cyclophosphamide neoadjuvant chemotherapy. Oncology Reports. v. 22, p. 805-813, 2009. Qualis: A3
27.	Freschi, Luciano ; Nievola, Catarina Carvalho ; Rodrigues, Maria Aurineide ; DOMINGUES, Douglas Silva ; Van Sluys, Marie-Anne ; Mercier, Helenice. Thermoperiod affects the diurnal cycle of nitrate reductase expression and activity in pineapple plants by modulating the endogenous levels of cytokinins. Physiologia plantarum (Kobenhavn. 1948). v. 137, p. 201-212, 2009. Qualis: Não identificado (1948))
28.	FUJITA, A; SATO, João Ricardo ; SILVA, F. H. L. ; GALVAO, M. C. ; SOGAYAR, Mari Cleide ; Miyano, Satoru. Quality control and reproducibility in DNA microarray experiments. Genome Informatics. v. 23, p. 21-31, 2009.Qualis: Não identificado (GENOME INFORMATICS)
29.	Fujita, Andre; Patriota, Alexandre G ; Sato, Joao R ; Miyano, Satoru. The impact of measurement errors in the identification of regulatory networks.. BMC Bioinformatics. v. 10, p. 412, 2009. Qualis: A1
30.	Fujita, André; SATO, João Ricardo ; DEMASI, MARCOS ANGELO ALMEIDA ; SOGAYAR, Mari Cleide ; FERREIRA, Carlos Eduardo ; Miyano, Satoru. COMPARING PEARSON, SPEARMAN AND HOEFFDING'S D MEASURE FOR GENE EXPRESSION ASSOCIATION ANALYSIS. Journal of Bioinformatics and Computational Biology. v. 07, p. 663, 2009. Qualis: B1
31.	Gillespie, Joseph J. ; Ammerman, Nicole C. ; Dreher-Lesnick, Sheila M. ; Rahman, M. Sayeedur ; Worley, Micah J. ; Setubal, Joao C. ; Sobral, Bruno S. ; Azad, Abdu F.. An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved. Plos One. v. 4, p. e4833, 2009. Qualis: A1
32.	GODOY, J. R. L. DE ; MARABESI, M. ; MORTARI L.C. ; AIDAR, M. P. M. ; BUCKERIDGE, M. S.. A dinâmica da floresta neotropical e as mudanças climáticas globais. Naturalia (São José do Rio Preto). v. 32, p. 53-66, 2009.Qualis: Não identificado (NATURALIA)
33.	Gray J ; Bevan M ; Brutnell T ; Buell CR ; Cone K ; HAKE, S. ; JACKSON, D. ; KELLOGG, E. ; MCCOUCH, S. ; MOCKLER, T. ; MOOSE, S. ; PETERSON, T. ; ROKSHAR, D. ; SOUZA, G. M. ; SPRINGER, N. ; STEIN, N. ; TIMMERMANS, M. ; WANG, G. ; Grotewold E. A recommendation for naming transcription factor proteins in the grasses. Plant Physiology (Bethesda). v. 149, p. 4-6, 2009. Qualis: A1
34.	Guerreiro-Junior, V ; HÜNEMEIER, T. ; Marrero, AR ; SALZANO, F. M. ; BORTOLINI, M. C.. Genetic signatures of parental contribution in black and white populations in Brazil. Genetics and Molecular Biology (Impresso). v. 32, p. 1-11, 2009. Qualis: A4
35.	GUIMARAES, A. M. S.; BRANDAO, P. ; MORAES, W. ; CUBAS, Z. S. ; SANTOS, L. C. ; VILLAREAL, L. Y. B. ; ROBES, R. ; COELHO, F. ; RESENDE, M. ; SANTOS, R. C. F. ; OLIVEIRA, R. C. ; YAMAGUTI, M. ; MARQUES, L. M. ; LOPES NETO, R. ; BUZINHANI, M. ; Marques R. ; MESSICK, J. B. ; BIONDO, A. W. ; TIMENETSKY, J.. Survey of feline leukemia virus and feline coronaviruses in captive neotropical wild felids from Southern Brazil. Journal of Zoo and Wildlife Medicine. v. 40, p. 360-364, 2009.Qualis: A3
36.	HÜNEMEIER, T.; SALZANO, F. M. ; BORTOLINI, M. C.. TCOF1 T / Ser variant and brachycephaly in dogs. Animal Genetics. v. 40, p. 357-358, 2009. Qualis: A1
37.	Jucimara Colombo ; Fachel, Ângela A. ; Calmon, Marilia Freitas ; Patricia M. Cury ; Érica Erina Fukuyama ; Eloiza Helena Tajara ; Jose Antonio Cordeiro ; Verjovski-Almeida, S. ; Reis, Eduardo M. ; Paula Rahal. Gene expression profiling reveals molecular marker candidates of laryngeal squamous cell carcinoma. Oncology Reports,. v. 21, p. 649-663, 2009. Qualis: A3 (ONCOLOGY REPORTS)
38.	Junta, Cristina Moraes ; Sandrin-Garcia, Paula ; Fachin-Saltoratto, Ana Lúcia ; Mello, Stephano Spanó ; Oliveira, Rene D. R. ; Rassi, Diane Meyre ; Giuliatti, Silvana ; Sakamoto-Hojo, Elza Tiemi ; Louzada-Junior, Paulo ; Donadi, Eduardo Antonio ; Passos, Geraldo A. S.. Differential gene expression of peripheral blood mononuclear cells from rheumatoid arthritis patients may discriminate immunogenetic, pathogenic and treatment features. Immunology (Oxford. Print). v. 127, p. 365-372, 2009. Qualis: Não identificado (PRINT))
39.	KOIDE, T.; Pang, W.L. ; Baliga, N.S.. The role of predictive modeling in rationally reengeneering biological systems. Nature Review, Microbiology. v. 7, p. 297-305, 2009. Qualis: A1
40.	KOIDE, T.; Reiss, D.J. ; Bare, J.C. ; Pang, W.L. ; Facciotti, M.T. ; Schmid, A.K. ; Pan, M. ; Marzolf, B. ; Van, P.T. ; LO, F. ; PRATAP, A. ; DEUTSCH, E. W. ; PETERSON, A. ; MARTIN, D. ; Baliga, N.S.. Prevalence of transcription promoters within archaeal operons and coding sequences. Molecular Systems Biology. v. 5, p. 285, 2009. Qualis: Não identificado (MOLECULAR SYSTEMS BIOLOGY)
41.	LAM, ERIC ; SHINE, JAMES ; DA SILVA, JORGE ; LAWTON, MICHAEL ; BONOS, STACY ; CALVINO, MARTIN ; CARRER, HELAINE ; SILVA-FILHO, MARCIO C. ; GLYNN, NEIL ; HELSEL, ZANE ; MA, JIONG ; RICHARD, EDWARD ; SOUZA, GLAUCIA MENDES ; MING, RAY. Improving sugarcane for biofuel: engineering for an even better feedstock. Global Change Biology. Bioenergy. v. 1, p. 251-255, 2009. Qualis: Não identificado (BIOENERGY)
42.	LIMA, W. C. ; Varani, A. M. ; Menck, C. F.M.. NAD Biosynthesis Evolution in Bacteria: Lateral Gene Transfer of Kynurenine Pathway in Xanthomonadales and Flavobacteriales. Molecular Biology and Evolution. v. 26, p. 399-406, 2009. Qualis: A1
43.	Lima-Bessa, K. M. ; SOLTYS, DT ; Marchetto, M. C. N. ; MENCK CF. Xeroderma pigmentosum: living in the dark but with hope in therapy. Drugs of the Future. v. 34, p. 665-672, 2009.Qualis: Não identificado (DRUGS OF THE FUTURE)
44.	LOURO, R. ; SMIRNOVA, A. S. ; Verjovski-Almeida, S.. Long intronic noncoding RNA transcription: Expression noise or expression choice?. Genomics (San Diego). v. 93, p. 291-298, 2009. Qualis: A3
45.	Manetti, M. E. ; ROSSI, M. ; NAKABASHI, M. ; GRANDBASTIEN, M. A. ; Sluys, Marie Anne. The Tnt1 family member Retrosol copy number and structure disclose retrotransposon diversification in different Solanum species. Molecular Genetics and Genomics. v. 281, p. 261-271, 2009. Qualis: A4
46.	MARQUES, L. M. ; BUZINHANI, M. ; Neto, R. L. ; OLIVEIRA, R. C. ; YAMAGUTI, M. ; GUIMARAES, A. M. S. ; TIMENETSKY, J.. Detection of Ureaplasma diversum in bovine semen straws for artificial insemination. Veterinary Record. v. 165, p. 572-573, 2009. Qualis: A1
47.	MELLO, B. P. ; ABRANTES, E. F. ; TORRES, C. H. ; FONSECA, R. S. ; CARRARO, D. M. ; BRENTANI, R. R. ; REIS, L. F. L. ; Brentani, Helena. No-match ORESTES explored as tumor markers. Nucleic Acids Research. v. 37, p. 2607-2617, 2009. Qualis: A1
48.	Meola, Juliana ; Dentillo, Daniel Blassioli ; Rosa e Silva, Júlio César ; Ferriani, Rui Alberto ; Veiga, Luciana Caricati ; Paro de Paz, Claudia Cristina ; Giuliatti, Silvana ; Martelli, Lúcia. Glycodelin expression in the endometrium of healthy women and in the eutopic and ectopic endometrium of women with endometriosis. Fertility and Sterility. v. 91, p. 1676-1680, 2009. Qualis: A1
49.	Oliveira, Katia C. ; Carvalho, Mariana L. P. ; Venancio, Thiago M. ; Miyasato, Patricia A. ; KAWANO, Toshie ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio. Identification of the Schistosoma mansoni TNF-Alpha Receptor Gene and the Effect of Human TNF-Alpha on the Parasite Gene Expression Profile. Plos Neglected Tropical Diseases. v. 3, p. e556, 2009. Qualis: A1
50.	Papini-Terzi, Flavia S ; Rocha, Flavia R ; Vencio, Ricardo ZN ; Felix, Juliana M ; Branco, Diana S ; Waclawovsky, Alessandro J ; Del Bem, Luiz EV ; Lembke, Carolina G ; Costa, Maximiller DL ; Nishiyama, Milton Y ; Vicentini, Renato ; Vincentz, Michel GA ; Ulian, Eugenio C ; Menossi, Marcelo ; SOUZA, G. M.. Sugarcane genes associated with sucrose content. BMC Genomics. v. 10, p. 120, 2009. Qualis: A2
51.	Perpetuo, Elen Aquino ; Marques, Regina Célia Pereira ; Mendes, Maria Anita ; Lima, Wanessa Cristina ; Menck, Carlos Frederico Martins ; Nascimento, Claudio Augusto Oller do. Characterization of the phenol monooxygenase gene from Chromobacterium violaceum: Potential use for phenol biodegradation. Biotechnology and Bioprocess Engineering. v. 14, p. 694-701, 2009. Qualis: B1
52.	Quiapim, A. C. ; BRITO, M. S. ; Bernardes, L. A.S. ; daSilva, I. ; MALAVAZI, I. ; DEPAOLI, H. C. ; MOLFETTA-MACHADO, J. B. ; Giuliatti, S. ; GOLDMAN, G. H. ; GOLDMAN, M. H. S.. Analysis of the Nicotiana tabacum Stigma/Style Transcriptome Reveals Gene Expression Differences between Wet and Dry Stigma Species. Plant Physiology (Bethesda). v. 149, p. 1211-1230, 2009. Qualis: A1
53.	Santos, Ramon F. ; Pôssa, Marcela A. S. ; Bastos, Matheus S. ; Guedes, Paulo M. M. ; Almeida, Márcia R. ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio ; Bahia, Maria T. ; Fietto, Juliana L. R.. Influence of Ecto-Nucleoside Triphosphate Diphosphohydrolase Activity on Trypanosoma cruzi Infectivity and Virulence. PLoS Neglected Tropical Diseases (Online). v. 3, p. e387, 2009. Qualis: A1
54.	SATO, João Ricardo ; Fujita, André ; Thomaz, Carlos Eduardo ; Martin, Maria da Graça Morais ; Mourão-Miranda, Janaina ; Brammer, Michael John ; Junior, Edson Amaro. Evaluating SVM and MLDA in the extraction of discriminant regions for mental state prediction. NeuroImage (Orlando). v. 46, p. 105-114, 2009. Qualis: A1
55.	Schmid, A.K. ; Reiss, D.J. ; Pan, M. ; KOIDE, T. ; Baliga, N.S.. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Molecular Systems Biology. v. 5, p. 282, 2009. Qualis: Não identificado (MOLECULAR SYSTEMS BIOLOGY)
56.	SCHUCH, A. ; GALHARDO, R. ; LIMA-BESSA, K. ; Schuch, NJ ; MENCK CF. Development of a DNA-dosimeter system for monitoring the effects of solar-ultraviolet radiation. Photochemical & Photobiological Sciences. v. 8, p. 111, 2009. Qualis: A3
57.	Secco, Mariane ; Moreira, Yuri B. ; Zucconi, Eder ; Vieira, Natassia M. ; Jazedje, Tatiana ; Muotri, Alysson R. ; Okamoto, Oswaldo K. ; Verjovski-Almeida, Sergio ; Zatz, Mayana. Gene Expression Profile of Mesenchymal Stem Cells from Paired Umbilical Cord Units: Cord is Different from Blood. Stem Cell Reviews. v. 5, p. 387-401, 2009. Qualis: A3
58.	SETUBAL, J. C.; dos Santos, P. ; Goldman, B. S. ; Ertesvag, H. ; Espin, G. ; Rubio, L. M. ; Valla, S. ; Almeida, N. F. ; Balasubramanian, D. ; Cromes, L. ; Curatti, L. ; Du, Z. ; Godsy, E. ; GOODNER, B. ; Hellner-Burris, K. ; Hernandez, J. A. ; Houmiel, K. ; Imperial, J. ; Kennedy, C. ; Larson, T. J. ; et.al. Genome Sequence of Azotobacter vinelandii, an Obligate Aerobe Specialized To Support Diverse Anaerobic Metabolic Processes. Journal of Bacteriology (Print). v. 191, p. 4534-4545, 2009. Qualis: A3
59.	Shimamura, T. ; Imoto, S. ; Yamaguchi, Rui ; FUJITA, A ; Nagasaki, M. ; Miyano, Satoru. Recursive regularization for inferring gene networks from time-course gene expression profiles. BMC Systems Biology. v. 3, p. 41, 2009. Qualis: A1
60.	Slater, S. C. ; Goldman, B. S. ; GOODNER, B. ; SETUBAL, J. C. ; Farrand, S. K. ; NESTER, E. W. ; Burr, T. J. ; Banta, L. ; Dickerman, A. W. ; Paulsen, I. ; OTTEN, L. ; Suen, G. ; Welch, R. ; Almeida, N. F. ; Arnold, F. ; Burton, O. T. ; Du, Z. ; Ewing, A. ; Godsy, E. ; Heisel, S. ; et.al. Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria. Journal of Bacteriology (Print). v. 191, p. 2501-2511, 2009. Qualis: A3
61.	Tseng, Tsai-Tien ; Tyler, Brett M ; Setubal, João C. Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology. BMC Microbiology (Online). v. 9, p. S2, 2009. Qualis: A2
62.	VENANCIO, Thiago M ; Cristofoletti, P. T. ; Ferreira, C. ; Verjovski-Almeida, S. ; Terra, W. R.. The Aedes aegypti larval transcriptome: a comparative perspective with emphasis on trypsins and the domain structure of peritrophins. Insect Molecular Biology. v. 18, p. 33-44, 2009. Qualis: A1
63.	VIBRANOVSKI, M. D.; LOPES, H. F. ; KARR, T. L. ; LONG, M.. Stage-Specific Expression Profiling of Drosophila Spermatogenesis Suggests that Meiotic Sex Chromosome Inactivation Drives Genomic Relocation of Testis-Expressed Genes. PLOS Genetics (Online). v. 5, p. e1000731, 2009. Qualis: A1
64.	VIBRANOVSKI, M. D.; ZHANG, Y. ; LONG, M.. General gene movement off the X chromosome in the Drosophila genus. Genome Research. v. 19, p. 897-903, 2009. Qualis: A1
65.	Vieira, Rafael F.C. ; Molento, Marcelo B. ; dos Santos, Leonilda C. ; Moraes, Wanderlei ; Cubas, Zalmir S. ; Santos, Andrea P. ; Guimaraes, Ana M.S. ; Mohamed, Ahmed ; Barros Filho, Ivan R. ; Biondo, Alexander W.. Detection of a novel hemoplasma based on 16S rRNA gene DNA in captive and free-ranging capybaras (Hydrochaeris hydrochaeris). Veterinary Microbiology (Amsterdam. Print). v. 139, p. 410-413, 2009. Qualis: Não identificado (PRINT))
66.	Warren, Andrew S ; Setubal, João. The Genome Reverse Compiler: an explorative annotation tool. BMC Bioinformatics. v. 10, p. 35, 2009. Qualis: A1
67.	Wattam, A. R. ; Williams, K. P. ; Snyder, E. E. ; Almeida, N. F. ; Shukla, M. ; Dickerman, A. W. ; Crasta, O. R. ; Kenyon, R. ; Lu, J. ; Shallom, J. M. ; Yoo, H. ; Ficht, T. A. ; Tsolis, R. M. ; Munk, C. ; Tapia, R. ; Han, C. S. ; Detter, J. C. ; Bruce, D. ; Brettin, T. S. ; SETUBAL, J. C. ; et.al. Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle. Journal of Bacteriology (Print). v. 191, p. 3569-3579, 2009. Qualis: A3
68.	Yilmaz A ; Nishiyama-Junior, M. Y. ; Garcia-Fuentes B ; SOUZA, G. M. ; Janies D ; Gray J ; Grotewold E. GRASSIUS: A Platform for Comparative Regulatory Genomics across the Grasses. PLANT PHYSIOLOGY (ONLINE). v. 149, p. 171-180, 2009. Qualis: A1

2008

1.	Bermudez, L. ; Urias, U. ; Milstein, D. ; Kamenetzky, L. ; Asis, R. ; Fernie, A. R. ; VAN SLUYS, M A ; Carrari, F. ; ROSSI, M.. A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany. v. 59, p. 2875-2890, 2008. Qualis: A1
2.	Brandao, A. D. ; Del Bem, L. E. V. ; Vincentz, M. ; BUCKERIDGE, M. S.. Expression pattern of four storage xyloglucan mobilization-related genes during seedling development of the rain forest tree Hymenaea courbaril L.. Journal of Experimental Botany. v. 60, p. 1191-1206, 2008. Qualis: A1
3.	BRAUN, GLAUCIA H. ; JORGE, DANIEL M. M. ; RAMOS, HENRIQUE P. ; ALVES, RAQUEL M. ; DA SILVA, VINICIUS B. ; Giuliatti, Silvana ; SAMPAIO, SULEY VILELA ; TAFT, CARLTON A. ; SILVA, CARLOS H. T. P.. Molecular Dynamics, Flexible Docking, Virtual Screening, ADMET Predictions, and Molecular Interaction Field Studies to Design Novel Potential MAO-B Inhibitors. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. v. 25, p. 347-355, 2008. Qualis: A3
4.	Brito, Glauber Costa ; Fachel, Ângela A. ; Vettore, Andre Luiz ; Vignal, Giselle M ; Gimba, Etel R.P. ; CAMPOS, Franz S. ; Barcinski, Marcello A. ; VERJOVSKI-ALMEIDA, Sergio ; Reis, Eduardo M. ; REIS, EM. Identification of protein-coding and intronic noncoding RNAs down-regulated in clear cell renal carcinoma. Molecular Carcinogenesis,. v. 47, p. 757-767, 2008. Qualis: A3 (MOLECULAR CARCINOGENESIS)
5.	CARDOSO, F. C. ; Gilson C. Macedo ; Elisandra Gava ; Gregory T. Kitten ; Vitor L. Mati ; Alan L. de Melo ; Marcelo V. Caliari ; Giulliana T. Almeida ; Thiago M. Venancio ; Verjovski-Almeida, S. ; Sergio C. Oliveira. Schistosoma mansoni Tegument Protein Sm29 Is Able to Induce a Th1-Type of Immune Response and Protection against Parasite Infection. PLoS Neglected Tropical Diseases (Online). v. 2, p. e308, 2008. Qualis: A1
6.	CARVALHO, H. ; ORTOLAN, T. G. ; PAULA, T. ; LEITE, R. A. ; WEINLICH, R. ; AMARANTES-MENDES, G. ; MENCK CF. Sustained activation of p53 in confluent nucleotide excision repair-deficient cells resistant to ultraviolet-induced apoptosis.. DNA Repair. v. 7, p. 922-931, 2008. Qualis: A1
7.	CARVALHO, Sidney Jurado de ; FENLEY, Marcia de Oliveira ; da Silva, Fernando Lui?s Barroso. Protein−Ion Binding Process on Finite Macromolecular Concentration. A Poisson−Boltzmann and Monte Carlo Study. Journal of Physical Chemistry B. v. 112, p. 16766-16776, 2008. Qualis: A2
8.	CASTRO, N. P. ; OSÓRIO, C. A. B. T. ; TORRES, C. H. ; BASTOS, E. P. ; MOURÃO NETO, M. ; SOARES, F. A. ; BRENTANI. HP ; CARRARO, D. M.. Evidence that molecular changes in cells occur before morphological alterations during the progression of breast ductal carcinoma. Breast Cancer Research. v. 10, p. R85, 2008. Qualis: A1
9.	CHIGANCAS, V. ; Lima-Bessa, K. M. ; STARY, A. ; Menck, C. F.M. ; SARASIN, A.. Defective Transcription/Repair Factor IIH Recruitment to Specific UV Lesions in Trichothiodystrophy Syndrome. Cancer Research. v. 68, p. 6074-6083, 2008. Qualis: A1
10.	COSTA, R. M. A. ; QUAYLE, C. ; JACYSYN, J. ; AMARANTES-MENDES, G. ; SARASIN, A. ; MENCK CF. Resistance to ultraviolet-induced apoptosis in DNA repair deficient growth arrested human fibroblasts is not related to recovery from RNA transcription blockage. Mutation Research. Fundamental and Molecular Mechanisms of Mutagenesis. v. 640, p. 1-7, 2008. Qualis: Não identificado (FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS)
11.	da Silva, F.C. ; Diaz-Ambrona, C.G.H. ; BUCKERIDGE, M. S. ; SOUZA, A. P. ; Barbieri, V. ; Dourado Neto, D.. Sugarcane and Climate Change: effects of CO2 on potential growth and development. Acta Horticulturae. v. 802, p. 331-336, 2008.Qualis: B4
12.	de Mello Varani, Alessandro ; Souza, Rangel Celso ; Nakaya, Helder I. ; de Lima, Wanessa Cristina ; Paula de Almeida, Luiz Gonzaga ; Kitajima, Elliot Watanabe ; Chen, Jianchi ; Civerolo, Edwin ; Vasconcelos, Ana Tereza Ribeiro ; Van Sluys, Marie-Anne. Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation. Plos One. v. 3, p. e4059, 2008. Qualis: A1
13.	de Souza, R. F.; Anantharaman, V. ; de Souza, S. J. ; Aravind, L. ; Gueiros-Filho, F. J.. AMIN domains have a predicted role in localization of diverse periplasmic protein complexes. Bioinformatics (Oxford). v. 24, p. 2423-2426, 2008. Qualis: A1
14.	Dhivya Arasappan ; Aurelien Mazurie ; Alves, J. M. ; Danail Bonchev ; BUCK, G. A.. Path-a-Way: A Strategy for Network Analysis of Microarray Data. IEEE Transactions on Biomedical Engineering (Print). v. 1, p. 432-436, 2008.Qualis: A1
15.	DURHAM, A. M.; Chimara, E. ; FERRAZOLI, L. ; UEKY, S. Y. M. ; MARTINS, M. C. ; ARBEIT, R. D. ; LEAO, S. C.. Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm of PRA-hsp65 patterns. BMC Microbiology (Online). v. 8, p. 48, 2008. Qualis: A2
16.	DURHAM, A. M.; LIMA, K. ; VIANA-NIERO, C. ; da Silva RABELLO, M. C. ; L.R.MARSOLA, ; LEAO, S. C.. Molecular Characterization of Mycobacterium massiliense and Mycobacterium bolletii in Isolates Collected from Outbreaks of Infections after Laparoscopic Surgeries and Cosmetic Procedures. Journal of Clinical Microbiology (Print). v. 46, p. 850-855, 2008. Qualis: A2
17.	FUJITA, A.; SATO, João Ricardo ; FESTA, Fernanda ; GOMES, L. R. ; SHINJO, Sueli Mieko Oba ; MARIE, Suely Kazue Nagahashi ; FERREIRA, Carlos Eduardo ; SOGAYAR, Mari Cleide. Identification of Col6a1 as a differentially expressed gene in human astrocytomas. Genetics and Molecular Research. v. 7, p. 371-378, 2008.Qualis: B3
18.	Fujita, Andre; Gomes, Luciana R ; Sato, Joao R ; Yamaguchi, Rui ; Thomaz, Carlos E ; Sogayar, Mari C ; Miyano, Satoru. Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates. BMC Systems Biology. v. 2, p. 106, 2008. Qualis: A1
19.	Fujita, André; SATO, João Ricardo ; GARAY-MALPARTIDA, HUMBERTO MIGUEL ; SOGAYAR, Mari Cleide ; FERREIRA, Carlos Eduardo ; Miyano, Satoru. MODELING NONLINEAR GENE REGULATORY NETWORKS FROM TIME SERIES GENE EXPRESSION DATA. Journal of Bioinformatics and Computational Biology (Print). v. 06, p. 961, 2008. Qualis: B1
20.	Gillespie, Joseph J. ; Williams, Kelly ; Shukla, Maulik ; Snyder, Eric E. ; Nordberg, Eric K. ; Ceraul, Shane M. ; Dharmanolla, Chitti ; Rainey, Daphne ; Soneja, Jeetendra ; Shallom, Joshua M. ; Vishnubhat, Nataraj Dongre ; Wattam, Rebecca ; Purkayastha, Anjan ; Czar, Michael ; Crasta, Oswald ; SETUBAL, J. C. ; Azad, Abdu F. ; Sobral, Bruno S.. Rickettsia Phylogenomics: Unwinding the Intricacies of Obligate Intracellular Life. Plos One. v. 3, p. e2018, 2008. Qualis: A1
21.	Gonzalez-Kristeller, D.C. ; FARAGE, L. ; FIORINI, L.C. ; LOOMIS, W. F. ; DASILVA, A.M.. The P450 oxidoreductase, RedA, controls development beyond the mound stage in Dictyostelium discoideum. BMC Developmental Biology (Online). v. 8, p. 1-10, 2008. Qualis: B1
22.	GUIMARAES, A. M. S.; ALTHAUS, Lilian Karenina ; TULLIO, D. ; DECONTO, Ivan ; SILVA, A. W. ; FERRARI, Marcus Vinícius ; BIONDO, A. W. ; ALBERTON, Geraldo Camilo. Laminitis in culled sows from commercial swine farms of Southern Brazil. Archives of Veterinary Science. v. 13, p. 140-144, 2008.Qualis: B2
23.	Hatanaka, Y. ; Nagasaki, M. ; Yamaguchi, Rui ; Obayashi, T. ; Numata, K. ; FUJITA, A. ; Shimamura, T. ; Tamada, Y. ; Imoto, S. ; Kinoshita, K. ; Nakai, K. ; Miyano, Satoru. A novel strategy to search conserved transcriptional factor binding sites among coexpressing genes in human. Genome Informatics. v. 20, p. 212-221, 2008.Qualis: Não identificado (GENOME INFORMATICS)
24.	Igreja, C ; CAIADO, F. ; CLODE, N. ; HENRIQUES, A. ; CAMARGO, Lauren ; REIS, EM ; DIAS, S.. Detailed molecular characterization of cord blood¿derived endothelial progenitors. Experimental Hematology. v. 36, p. 193.e1-193.e15, 2008. Qualis: A3
25.	Kojima K ; FUJITA, A. ; Shimamura, T. ; Imoto, S. ; Miyano, Satoru. Estimation of nonlinear gene regulatory networks via L1 regularized NVAR from time series gene expression data. Genome Informatics. v. 20, p. 37-51, 2008.Qualis: Não identificado (GENOME INFORMATICS)
26.	Leite, Ricardo A ; Marchetto, Maria C ; Muotri, Alysson R ; de Moraes Vasconcelos, Dewton ; Prado de Oliveira, Zilda N ; Rivitti Machado, Maria C ; Martins Menck, Carlos F. Identification of XP Complementation Groups by Recombinant Adenovirus Carrying DNA Repair Genes. Journal of Investigative Dermatology. v. 129, p. 502-506, 2008. Qualis: A1
27.	LIMA, W. ; PAQUOLA, A. C. ; VARANI, A. M. ; VANSLUYS MA ; MENCK, C. F. M.. Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism.. FEMS Microbiology Letters. v. 281, p. 87-97, 2008. Qualis: B2
28.	LIMA, W. C. ; MENCK CF. Replacement of the Arginine Biosynthesis Operon in Xanthomonadales by Lateral Gene Transfer. Journal of Molecular Evolution. v. 66, p. 266-275, 2008. Qualis: A3
29.	LIMA-BESSA, K. ; ARMELINI, M. ; CHIGANCAS, V. ; JACYSYN, J. ; AMARANTES-MENDES, G. ; SARASIN, A. ; MENCK CF. CPDs and 6-4PPs play different roles in UV-induced cell death in normal and NER-deficient human cells. DNA Repair. v. 7, p. 303-312, 2008. Qualis: A1
30.	LOURO, R ; ELJUNDI, T ; NAKAYA, H ; REIS, E ; REIS, EM ; VERJOVSKIALMEIDA, S. Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci. Genomics (San Diego). v. 92, p. 18-25, 2008. Qualis: A3
31.	Lu, Hong ; Patil, Prabhu ; Van Sluys, Marie-Anne ; White, Frank F. ; Ryan, Robert P. ; Dow, J. Maxwell ; Rabinowicz, Pablo ; Salzberg, Steven L. ; Leach, Jan E. ; Sonti, Ramesh ; Brendel, Volker ; Bogdanove, Adam J.. Acquisition and Evolution of Plant Pathogenesis¿Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas. . v. 3, p. e3828, 2008. Qualis: Não identificado ()
32.	MARTINS, D. C. ; BRAGA-NETO, U. ; BITTNER, M. L. ; HASHIMOTO, R. F. ; DOUGHERTY, E. R.. Intrinsically Multivariate Predictive Genes. IEEE Journal of Selected Topics in Signal Processing. v. 2, p. 424-439, 2008. Qualis: A1
33.	MASCHIETTO, M. ; DE CAMARGO, B. ; BRENTANI. HP ; GRUNDY, P. ; SREDNI, S. T. ; TORRES, C. H. ; MOTA, L. D. ; CUNHA, I. W. ; PATRÃO, D. F. C. ; COSTA, C. M. L. ; SOARES, F. A. ; BRENTANI, R. R. ; CARRARO, D. M.. Molecular profiling of isolated histological components of wilms tumor implicates a common role for the Wnt signaling pathway in kidney and tumor development. Oncology (Basel). v. 75, p. 81-91, 2008. Qualis: A4
34.	MENOSSI, M. ; SILVA-FILHO, M. C. ; Vincentz, M. ; Van-Sluys, M.-A. ; Souza, G. M.. Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development. International Journal of Plant Genomics (Print). v. 2008, p. 1-12, 2008. Qualis: A2 (INTERNATIONAL JOURNAL OF GENOMICS)
35.	OLIVEIRA, G ; FRANCO, G ; Verjovski-Almeida, S.. The Brazilian contribution to the study of the Schistosoma mansoni transcriptome. Acta Tropica. v. 108, p. 179-182, 2008. Qualis: A1
36.	Oliveira. C.M. ; PEREIRA, A. C. ; de Andrade, M. ; SOLER, J. M. P. ; KRIEGER, J. E.. Heritability of cardiovascular risk factors in a Brazilian population: Baependi Heart Study. BMC Medical Genetics. v. 32, p. 1-8, 2008. Qualis: A4
37.	Papini-Terzi F. S. ; FELIX, J. M. ; ROCHA, F. R. ; Waclawovsky AJ ; ULIAN, E. C. ; Chabregas S ; Falco MC ; Nishiyama-Junior, M. Y. ; VENCIO, R. Z. N. ; VICENTINI, R. ; MENOSSI, M. ; SOUZA, G. M.. The SUCEST-FUN project: identifying genes that regulate sucrose content in sugarcane. Sugar Cane International. v. 26, p. 25-29, 2008.Qualis: Não identificado (SUGAR CANE INTERNATIONAL)
38.	Pires dos Santos, Andrea ; SANTOS, R. P. ; BIONDO, A. W. ; DORA, J. M. ; GOLDANI, L. Z. ; OLIVEIRA, S. T. ; GUIMARAES, A. M. S. ; TIMENETSKY, J. ; de Morais, H. A. ; GONZALEZ, F. H. D. ; MESSICK, J. B.. Hemoplasma Infection in HIV-positive Patient, Brazil. Emerging Infectious Diseases (Print). v. 14, p. 1922-1924, 2008. Qualis: A1
39.	Querec, Troy D ; Akondy, Rama S ; Lee, Eva K ; Cao, Weiping ; Nakaya, Helder I ; Teuwen, Dirk ; Pirani, Ali ; Gernert, Kim ; Deng, Jiusheng ; Marzolf, Bruz ; Kennedy, Kathleen ; Wu, Haiyan ; Bennouna, Soumaya ; Oluoch, Herold ; Miller, Joseph ; Vencio, Ricardo Z ; Mulligan, Mark ; Aderem, Alan ; Ahmed, Rafi ; Pulendran, Bali ; et.al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Nature Immunology. v. 10, p. 116-125, 2008. Qualis: A1
40.	RAM, Rossetti ; JCC, Lorenzi ; S, Giuliatti ; CL, Silva ; AAM, Coelho-Castelo. In Silico Prediction of the Tertiary Structure of M. leprae Hsp65 Protein Shows an Unusual Structure in Carboxy-terminal Region. Journal of Computer Science and Systems Biology (Online). v. 01, p. 126-131, 2008. Qualis: Não identificado (LEPRAE HSP65 PROTEIN SHOWS AN UNUSUAL STRUCTURE IN CARBOXY-TERMINAL REGION. JOURNAL OF COMPUTER SCIENCE AND SYSTEMS BIOLOGY)
41.	RINCONES, J. ; SCARPARI, L. M. ; CARAZZOLLE, M. F. ; MONDENGO, J. M. C. ; FORMIGHIERI, E. F. ; Barau, J. G. ; COSTA, G. G. L. ; CARRARO, D. M. ; Brentani, Helena P. ; VILAS-BOAS, L. A. ; OLIVEIRA, B. V. ; SABHA, M. ; DIAS, R. ; CASCARDO, J. M. ; AZEVEDO, R. A. ; MEINHARDT, L. W. ; PEREIRA, G. A. G.. Differential Gene Expression Between the Biotrophic-Like and Saprotrophic Mycelia of the Witches' Broom Pathogen. Molecular Plant-Microbe Interactions. v. 21, p. 891-908, 2008. Qualis: A1
42.	ROCHA, R. ; PAQUOLA, A. ; MARQUES, M. ; MENCK CF ; GALHARDO, R.. Characterization of the SOS regulon of Caulobacter crescentus. Journal of Bacteriology. v. 190, p. 1209-1218, 2008. Qualis: A3
43.	Salem-Izacc, S. M. ; KOIDE, T. ; Vencio, R. Z. N. ; Gomes, S. L.. Global Gene Expression Analysis during Germination in the Chytridiomycete Blastocladiella emersonii. Eukaryotic Cell. v. 8, p. 170-180, 2008. Qualis: Não identificado (EUKARYOTIC CELL)
44.	Salzberg, Steven L ; Sommer, Daniel D ; Schatz, Michael C ; Phillippy, Adam M ; Rabinowicz, Pablo D ; Tsuge, Seiji ; Furutani, Ayako ; Ochiai, Hirokazu ; Delcher, Arthur L ; Kelley, David ; Madupu, Ramana ; Puiu, Daniela ; Radune, Diana ; Shumway, Martin ; Trapnell, Cole ; Aparna, Gudlur ; Jha, Gopaljee ; Pandey, Alok ; Patil, Prabhu B ; SLUYS MAV. ; et.al. Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics. v. 9, p. 204, 2008. Qualis: A2
45.	SATO, J ; THOMAZ, C ; CARDOSO, E ; FUJITA, A ; MARTIN, M ; AMAROJR, E. Hyperplane navigation: A method to set individual scores in fMRI group datasets. NeuroImage (Orlando). v. 42, p. 1473-1480, 2008. Qualis: A1
46.	SATO, João Ricardo ; da Graça Morais Martin, Maria ; Fujita, André ; Mourão-Miranda, Janaina ; Brammer, Michael John ; Amaro, Edson. An fMRI normative database for connectivity networks using one-class support vector machines. Human Brain Mapping. v. 30, p. 1068-1076, 2008. Qualis: A1
47.	Serafini, C. A. V. ; ROSA, G. A. ; GUIMARAES, A. M. S. ; de Morais, H. A. ; BIONDO, A. W.. Survey of Owned Feline and Canine Populations in Apartments from a Neighbourhood in Curitiba, Brazil. Zoonoses and Public Health (Print). v. 55, p. 402-405, 2008. Qualis: A1
48.	SOBRAL, R. A. ; HONDA, S. T. ; KATAYAMA, M. L. H. ; BRENTANI. HP ; BRENTANI, M. M. ; PATRÃO, D. F. C. ; FOLGUEIRA, M. A. A. K.. Tumor slices as a model to evaluate doxorubicin in vitro treatment and expression of trios of genes PRSS11, MTSS1, CLPTM1 and PRSS11, MTSS1, SMYD2 in canine mammary gland cancer. Acta Veterinaria Scandinavica. v. 50, p. 27, 2008. Qualis: A2
49.	SOUZA, A. P. ; Gaspar M. ; Emerson Alves Silva ; Eugênio Cesar Ulian ; Alessandro Jaquiel Waclawovsky ; MILTON YUTAKA NISHIYAMA-JR ; Renato Vicentini dos Santos ; Marcelo Menossi Teixeira ; Glaucia Mendes Souza ; BUCKERIDGE, M. S.. Elevated CO 2 increases photosynthesis, biomass and productivity, and modifies gene expression in sugarcane. Plant, Cell and Environment. v. 31, p. 1116-1127, 2008. Qualis: A1
50.	Tavares, J. R. ; de Souza, R. F. ; Meira, G. L. S. ; Gueiros-Filho, F. J.. Cytological Characterization of YpsB, a Novel Component of the Bacillus subtilis Divisome. Journal of Bacteriology (Print). v. 190, p. 7096-7107, 2008. Qualis: A3
51.	Van, P.T. ; Schmid, A.K. ; King, N.L. ; Kaur, A. ; Pan, M. ; Whitehead, K. ; KOIDE, T. ; Facciotti, M.T. ; Goo, Y.A. ; Deutsch, E.W. ; Reiss, D.J. ; Mallick, P. ; Baliga, N.S.. Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage.. Journal of Proteome Research. v. 7, p. 3755-3764, 2008. Qualis: A1
52.	Verjovski-Almeida, S. ; DEMARCO, R. Current developments on Schistosoma proteomics. Acta Tropica. v. 108, p. 183-185, 2008. Qualis: A1
53.	VIBRANOVSKI, M. D.; KOERICH, L. B. ; CARVALHO, A. B.. Two New Y-Linked Genes in Drosophila melanogaster. Genetics (Austin, Tex.). v. 179, p. 2325-2327, 2008. Qualis: A2
54.	Yan, S. ; Liu, H. ; Mohr, T. J. ; Jenrette, J. ; Chiodini, R. ; Zaccardelli, M. ; SETUBAL, J. C. ; Vinatzer, B. A.. Role of Recombination in the Evolution of the Model Plant Pathogen Pseudomonas syringae pv. tomato DC3000, a Very Atypical Tomato Strain. Applied and Environmental Microbiology. v. 74, p. 3171-3181, 2008. Qualis: A1
55.	ZAINI, Paulo A. ; FOGAÇA, A.C. ; LUPO, F.N. G. ; NAKAYA, Helder I ; VENCIO, Ricardo Z N ; DASILVA, A.M.. The Iron Stimulon of Xylella fastidiosa Includes Genes for Type IV Pilus and Colicin V-Like Bacteriocins. Journal of Bacteriology. v. 190, p. 2368-2378, 2008. Qualis: A3
56.	Zerillo, Marcelo M ; VAN SLUYS, M A ; Camargo, Luis ; Monteiro-Vitorello, Claudia B. Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli. BMC Microbiology (Online). v. 8, p. 127, 2008. Qualis: A2

2007

1.	ALVES, J. M. P.; BUCK, G. A.. Automated System for Gene Annotation and Metabolic Pathway Reconstruction Using General Sequence Databases. Chemistry & Biodiversity (Print). v. 4, p. 2593-2602, 2007. Qualis: A4
2.	AMARAL, L. I. V. DO ; Gaspar M. ; COSTA, P. F. ; AIDAR, M. P. M. ; BUCKERIDGE, M. S.. Novo método enzimático rápido e sensível de extração e dosagem de amido em materiais vegetais.. Hoehnea (São Paulo). v. 34, p. 425-431, 2007.Qualis: B4
3.	ANDRIOLI, Luiz Paulo ; SOUZA, Glaucia Mendes ; DA SILVA, A. M.. Staurosporine induces tyrosine phosphorylation in Dictyostelium discoideum proteins. CELL BIOCHEMISTRY AND FUNCTION. v. 25, p. 555-561, 2007. Qualis: B1
4.	ARMELINI, M. ; LIMA-BESSA, K. ; MARCHETTO, M. ; MUOTRI, A. R. ; CHIGANCAS, V. ; LEITE, R. ; CARVALHO, H. ; MENCK CF. Exploring DNA damage responses in human cells with recombinant adenoviral vectors.. Human & Experimental Toxicology. v. 6, p. 1340-1344, 2007. Qualis: B1
5.	BARRERA, J. ; CESAR JÚNIOR, R. M. ; HUMES JUNIOR, C. ; MARTINS JÚNIOR, D. C. ; PATRÃO, D. F. C. ; SILVA, P. J. ; BRENTANI. HP. A feature selection approach for identification of signature genes from SAGE data.. BMC Bioinformatics. v. 8, p. 169, 2007. Qualis: A1
6.	BATISTA, L. F. Z. ; ROOS, W. ; CHRISTMANN, M. ; MENCK CF ; KAINA, B.. Differential sensitivity of malignant glioma cells to methylating and chloroethylating anticancer drugs: p53 determines the switch by regulating xpc, ddb2 and DNA double-strand breaks.. Cancer Research. v. 67, p. 11886-11895, 2007. Qualis: A1
7.	BUCKERIDGE, M. S. Mudanças climáticas, biodiversidade e sociedade: como a teoria de redes pode ajudar a compreender o presente e planejar o futuro?. Multiciência (UNICAMP). v. 8, p. 88-107, 2007.Qualis: Não identificado (MULTICIÊNCIA)
8.	CANTAO, M. ; FERREIRA, J. E. ; LEMOS, E. G. M.. Optimal Clones Identifier for Genomic Shotgun Libraries: OC Identifier Tool. GENETICS AND MOLECULAR RESEARCH. v. 6, p. 743-755, 2007.Qualis: B3
9.	CARREIRA, A. C. O. ; BASTOS, C. ; Verjovski-Almeida, S.. Probing SERCA1a sarcoplasmic reticulum Ca2+-ATPase phosphorylation-site mutant D351E with inorganic phosphate. Brazilian Journal of Medical and Biological Research. v. 40, p. 1323-1332, 2007. Qualis: A4
10.	CHIROMATZO, A. O. ; OLIVEIRA, T. Y. K. ; PEREIRA, G. ; COSTA, A. Y. ; MONTESCO, C. A. E. ; GRAS, D. E. ; YOSETAKE, F. ; CERVATO, M. C. ; PRADO, P. R. R. ; CARDENAS, R. G. C. C. L. ; CERRI, R. ; BORGES, R. L. ; LEMOS, R. N. ; ALVARENGA, S. M. ; PERALLIS, V. R. C. ; PINHEIRO, D. G. ; SILVA, I. T. ; BRANDÃO, R. M. ; CUNHA, M. A. V. ; GIULIATTI, S. ; et.al. miRNApath: a database of miRNAs, target genes and metabolic pathways. Genetics and Molecular Research. v. 6, p. 859-865, 2007.Qualis: B3
11.	da Silva Neto, J. F. ; KOIDE, T. ; Abe, C.M. ; Gomes, S. L. ; MARQUES, M. V.. Role of sigma54 in the regulation of genes involved in type I and type IV pili biogenesis in Xylella fastidiosa. Archives of Microbiology. v. 189, p. 249-261, 2007. Qualis: B2
12.	da Silva Neto, J. F. ; KOIDE, T. ; MARQUES, M. V. ; Gomes, S. L.. The single extracytoplasmic-function sigma factor of Xylella fastidiosa is involved in the heat shock response and presents an unusual regulatory mechanism.. Journal of Bacteriology. v. 189, p. 551-560, 2007. Qualis: A3
13.	Da SILVA, F. L. B.; OLIVARES, Wilmer ; COLMENARES, Pedro J. BASIC STATISTICS AND VARIATIONAL CONCEPTS BEHIND THE REVERSE MONTE CARLO TECHNIQUE. Molecular Simulation, Londres. v. 33, p. 639-647, 2007. Qualis: Não identificado (MOLECULAR SIMULATION, LONDRES)
14.	DASILVA, J ; FERNANDES, R ; TICLI, F ; OLIVEIRA, C ; MAZZI, M ; FRANCO, J ; GIULIATTI, S ; PEREIRA, P ; SOARES, A ; SAMPAIO, S. Triterpenoid saponins, new metalloprotease snake venom inhibitors isolated from Pentaclethra macroloba. Toxicon (Oxford). v. 50, p. 283-291, 2007. Qualis: A4
15.	de Morais, H. A. ; GUIMARAES, A. M. S. ; VIDOTTO, O ; BAUMANN, A ; BIONDO, A. W. ; MESSICK, J. B.. Co-infection with Mycoplasma haemofelis and `Candidatus Mycoplasma haemominutum¿ in three cats from Brazil?. Journal of Feline Medicine and Surgery. v. 9, p. 518-520, 2007. Qualis: A1
16.	DURHAM, A. M.; Ling KH ; MA, R. ; RIVAILLER, P. ; IVENS, A. ; MADEIRA, A. M. ; Mungall K. ; Novaes, J. ; Sobreira, T.J. ; GRUBER, A. ; BERRIMAN, M. ; Tomley, F. ; DEAR, P. H. ; WAN, K. L.. Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization. Genome Research. v. 17, p. 311-319, 2007. Qualis: A1
17.	DURHAM, A. M.; MACHADO-LIMA, A. ; Hernando A. del Portillo. Computational methods in noncoding RNA research. Journal of Mathematical Biology (Print). v. 56, p. 15-49, 2007. Qualis: A4
18.	FAN, C. ; VIBRANOVSKI, M. D. ; CHEN, Y. ; LONG, M.. A Microarray Based Genomic Hybridization Method for Identification of New Genes in Plants: Case Analyses of Arabidopsis and Oryza. Journal of Integrative Plant Biology. v. 49, p. 915-926, 2007. Qualis: A1
19.	FANGANIELLO, R. D. ; SERTIE, A. L. ; REIS, EM ; YEH, E. ; OLIVEIRA, N. ; BUENO, D. F. ; KERKIS, I. ; ALONSO, N. ; CAVALHEIRO, S. ; MATSUSHITA, H. ; VERJOVSKI-ALMEIDA, Sergio ; BUENO, M. R. P.. Apert p.Ser252Trp mutation in FGFR2 alters osteogenic potential and gene expression of cranial periosteal cells. Molecular Medicine (Cambridge). v. 13, p. 422-442, 2007. Qualis: Não identificado (MOLECULAR MEDICINE)
20.	FUJITA, A.; SATO, João Ricardo ; FERREIRA, Carlos Eduardo ; SOGAYAR, Mari Cleide. GEDI: a user-friendly toolbox for analysis of large-scale gene expression data. BMC Bioinformatics. v. 8, p. 457, 2007. Qualis: A1
21.	FUJITA, A.; SATO, João Ricardo ; MALPARTIDA, Humberto Miguel Garay ; MORETTIN, Pedro Alberto ; SOGAYAR, Mari Cleide ; FERREIRA, Carlos Eduardo. Time-varying modeling of gene expression regulatory networks using the wavelet dynamic vector autoregressive method. Bioinformatics (Oxford. Print). v. 23, p. 1623/13-1630, 2007. Qualis: Não identificado (PRINT))
22.	FUJITA, A.; SATO, João Ricardo ; MALPARTIDA, Humberto Miguel Garay ; Yamaguchi, Rui ; Miyano, Satoru ; SOGAYAR, Mari Cleide ; FERREIRA, Carlos Eduardo. Modeling gene expression regulatory networks with the sparse vector autoregressive model. BMC Systems Biology. v. 1, p. 39, 2007. Qualis: A1
23.	Gonçalves EG ; Mayo SJ ; SLUYS MAV. ; Salatino A. Combined genotypic-phenotypic phylogeny of the tribe Spathicarpeae (Araceae) with reference to independent events of invasion to Andean regions.. Molecular Phylogenetics and Evolution. v. jan, p. in press, 2007. Qualis: A1
24.	GUIMARAES, A. M. S.; BIONDO, A. W. ; LARA, A. C. ; MESSICK, J. B.. Exploratory study of Mycoplasma suis (Eperythrozoon suis) on four commercial pig farms in southern Brazil. Veterinary Record. v. 160, p. 50-53, 2007. Qualis: A1
25.	GUIMARAES, A. M. S.; Javorouski, Manoel L. ; Bonat, Marcelo ; Lacerda, Oneida ; Balbinotti, Bruna ; Queiroz, Lucyenne G.P.B. ; Timenetsky, Jorge ; Biondo, Alexander W. ; Messick, Joanne B.. Molecular detection of "Candidatus Mycoplasma haemominutum" in a lion (Panthera leo) from a brazilian zoological garden. Revista do Instituto de Medicina Tropical de São Paulo (Impresso). v. 49, p. 195-196, 2007. Qualis: B1
26.	HAVLIOGLU, N. ; WANG, J. ; FUSHIMI, K. ; VIBRANOVSKI, M. D. ; KAN, Z. ; GISH, W. ; FEDOROV, A. ; LONG, M. ; WU, J. Y.. An Intronic Signal for Alternative Splicing in the Human Genome. PLoS One. v. 2, p. e1246, 2007. Qualis: A1
27.	HÜNEMEIER, T.; Carvalho, CB ; Marrero, AR ; SALZANO, F. M. ; BORTOLINI, M. C.. Niger-Congo speaking populations and the formation of the Brazilian gene pool: mtDNA and Y-chromosome data. American Journal of Physical Anthropology. v. 133, p. 854-867, 2007. Qualis: A2
28.	KASHIWABARA, A. Y. ; VIEIRA, D. ; LIMA, A. M. ; DURHAM, A. M.. Splice site prediction using stochastic regular grammars. GENETICS AND MOLECULAR RESEARCH. v. 6, p. 105-115, 2007.Qualis: B3
29.	LEVANOGARCIA, Julio ; MORTARA, Renato A ; Verjovski-Almeida, S. ; DEMARCO, Ricardo. Characterization of Schistosoma mansoni ATPDase2 gene, a novel apyrase family member. Biochemical and Biophysical Research Communications. v. 352, p. 384-389, 2007. Qualis: A3
30.	LOURO, Rodrigo ; NAKAYA, Helder I. ; AMARAL, Paulo Paiva ; FESTA, Fernanda ; SOGAYAR, Mari Cleide ; SILVA, Aline M. da ; VERJOVSKI-ALMEIDA, Sergio ; REIS, EM. Androgen responsive intronic non-coding RNAs. BMC BIOLOGY, Inglaterra. v. 5:4, n. 4, p. 1-14, 2007. Qualis: Não identificado (BMC BIOLOGY, INGLATERRA)
31.	M. Menck, Carlos F.; Menck, CF ; Armelini, MG ; Lima-Bessa, Keronninn M. ; Armelini, Melissa G.. On the Search for Skin Gene Therapy Strategies of Xeroderma Pigmentosum Disease. Current Gene Therapy. v. 7, p. 163-174, 2007. Qualis: A4
32.	MANETTI, Maria Elisa ; ROSSI, M. ; COSTA, A. P. P. ; Clausen AM ; SLUYS MAV.. Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera.. BMC Evolutionary Biology (Online). v. 7, p. 34, 2007. Qualis: A1
33.	MARTINS-PINHEIRO, M. ; MARQUES, R. ; MENCK CF. Genome analysis of DNA repair genes in the alpha proteobacterium Caulobacter crescentus. BMC Microbiology (Online). v. 7, p. 17, 2007. Qualis: A2
34.	REIS, EM; Nakaya, Helder I ; Amaral, Paulo P ; LOURO, Rodrigo ; Lopes, André ; FACHEL, Angela A ; Moreira, Yuri B ; El-Jundi, Tarik A ; da Silva, Aline M ; Reis, Eduardo M ; VERJOVSKI-ALMEIDA, Sergio. Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. GenomeBiology.com (London. Genome Biology. v. 8, p. 1-25, 2007. Qualis: Não identificado (GENOME BIOLOGY)
35.	NAKAYA, Helder Ikemoto ; BECKEDORFF, F. C. F. ; BALDINI, M. L. ; FACHEL, Angela A ; REIS, EM ; VERJOVSKI-ALMEIDA, Sergio. Splice Variants of TLE Family Genes and Up-Regulation of a TLE3 Isoform in Prostate Tumors.. Biochemical and Biophysical Research Communications,. v. 364, p. 918-923, 2007. Qualis: A3 (BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS)
36.	NENE, V. ; WORTMAN, J. R. ; SEVERALAUTHORS, O. ; MENCK CF ; VERJOVSKI-ALMEIDA, S. ; SEVERSON, D.. Genome Sequence of Aedes aegypti, a Major Arbovirus Vector. Science. v. 316, p. 1718-1723, 2007. Qualis: A1
37.	OJOPI, E ; OLIVEIRA, P. S. L. ; NUNES, D. N. ; PAQUOLA, A ; DEMARCO, Ricardo ; GREGORIO, S. ; AIRES, K. ; MENCK, C. F. M. ; LEITE, Luciana C ; Verjovski-Almeida, S. ; DIAS NETO, E.. A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE. BMC Genomics. v. 8, p. 186, 2007. Qualis: A2
38.	ROCHA, F. R. ; Papini-Terzi F. S. ; Nishiyama-Junior, M. Y. ; VENCIO, R. Z. N. ; VICENTINI, R. ; DUARTE, R. ; VINAGRE, F. ; Medeiros, A ; di MAURO, S. M. Z. ; ULIAN, E. C. ; HEMERLY, A. S. ; FIGUEIRA, A. ; SILVA-FILHO, M. C. ; MENOSSI, M. ; SOUZA, G. M.. Signal transduction-related responses to phytohormones and environmental challenges in sugarcane. BMC Genomics. v. 8, p. 71, 2007. Qualis: A2
39.	ROELA, R. A. ; CARRARO, D. M. ; BRENTANI. HP ; KAIANO, J. ; SIMÃO, D. F. ; GUARNIEIRO, R. ; LOPES, L. F. ; BOROJEVIC, R. ; BRENTANI, M. M.. Gene stage-specific expression in the microenvironment of pediatric myelodysplastic syndromes. Leukemia Research. v. 31, p. 579-589, 2007. Qualis: A3
40.	ROOS, W. ; BATISTA, L. F. Z. ; NAUMANN, S. ; WELLER, M. ; MENCK CF ; KAINA, B.. Mechanism of apoptotic death triggered by methylating agent-induced DNA damage in glioma cells. Oncogene (Basingstoke). v. 26, p. 186-197, 2007. Qualis: A1
41.	SATO, João Ricardo ; FUJITA, A. ; AMARO JR, Edson ; MIRANDA, Janaína Mourão ; MORETTIN, Pedro Alberto ; BRAMMER, Michael J. DWT-CEM: An algorithm for scale-temporal clustering in fMRI. Biological Cybernetics. v. 97, p. 33-45, 2007. Qualis: A2
42.	SETTA, N. ; COSTA, A. P. P. ; Lopes FR ; SLUYS MAV. ; CARARETO, C. M.. Transposon Display supports transpositional activity of P element in species of the saltans group of Drosophila. Journal of Genetics. v. 86, p. 37-43, 2007.Qualis: B3
43.	SETUBAL, J C ; Verjovski-Almeida, S.. Brazilian Symposium on Bioinformatics.. Computers in Biology and Medicine. v. 37, p. 113-114, 2007.Qualis: A2
44.	Snyder, E. E. ; Kampanya, N. ; Lu, J. ; Nordberg, E. K. ; Karur, H. R. ; Shukla, M. ; Soneja, J. ; Tian, Y. ; Xue, T. ; Yoo, H. ; Zhang, F. ; Dharmanolla, C. ; Dongre, N. V. ; Gillespie, J. J. ; Hamelius, J. ; Hance, M. ; Huntington, K. I. ; Jukneliene, D. ; Koziski, J. ; SETUBAL, J. C. ; et.al. PATRIC: The VBI PathoSystems Resource Integration Center. Nucleic Acids Research. v. 35, p. D401-D406, 2007. Qualis: A1
45.	SOUSA-CANAVEZ, J. M. ; BETON, Daniela ; Gonzalez-Kristeller, D.C. ; DA SILVA, A. M.. Identification and domain mapping of Dictyostelium discoideum type-1 protein phosphatase inhibitor-2. Biochimie (Paris). v. 89, p. 692-701, 2007. Qualis: A2
46.	TONINI, P. P. ; LISBOA, C. G. ; SILVA, C. O. ; VIVEIROS, S. C. M. ; BUCKERIDGE, M. S.. Testa is involved in the control of storage mobilisation in seeds of Sesbania virgata (Cav.) Pers., a tropical legume tree from the Atlantic Forest. Trees (Berlin). v. 21, p. 13-21, 2007. Qualis: A2
47.	TREPODE, N. W. ; ARMELIN, H. A. ; BITTNER, M. L. ; BARRERA, J. ; GUBITOSO, M. D. ; HASHIMOTO, R. F.. A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks. EURASIP Journal on Bioinformatics and Systems Biology (Online). v. 2007, p. 1-11, 2007. Qualis: Não identificado (EURASIP JOURNAL ON BIOINFORMATICS AND SYSTEMS BIOLOGY)
48.	Venancio, Thiago M ; DeMarco, Ricardo ; Almeida, Giulliana T ; Oliveira, Katia C ; Setubal, João C ; VERJOVSKI-ALMEIDA, Sergio. Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions.. BMC Genomics. v. 8, p. 407, 2007. Qualis: A2
49.	Verjovski-Almeida, S.; VENANCIO, Thiago M ; OLIVEIRA, Katia C P ; ALMEIDA, Giulliana T ; DEMARCO, Ricardo. Use of a 44k oligoarray to explore the transcriptome of Schistosoma mansoni adult worms. Experimental Parasitology. v. 117, p. 236-245, 2007. Qualis: A4
50.	VIBRANOVSKI, M. D.; SAKABE, N. J. ; LONG, M.. Birth and evolution of human exons. ENCYCLOPEDIA OF LIFE SCIENCES (ONLINE). v. 1, p. 1, 2007. Qualis: NP
51.	VÊNCIO, R. Z. N. ; VARUZZA, L. ; PEREIRA, C. A. B. ; BRENTANI. HP ; SHMULEVICH, I.. Simcluster: clustering enumeration gene expression data on the simplex space. BMC Bioinformatics. v. 8, p. 246, 2007. Qualis: A1
52.	XU, P. ; ALVES, J. M. P. ; Kitten, T. ; Brown, A. ; Chen, Z. ; OZAKI, L. S. ; MANQUE, P. ; Ge, X. ; SERRANO, M. G. ; PUIU, D. ; Hendricks, S. ; WANG, Y. ; Chaplin, M. D. ; Akan, D. ; Paik, S. ; PETERSON, D. L. ; Macrina, F. L. ; BUCK, G. A.. Genome of the Opportunistic Pathogen Streptococcus sanguinis. Journal of Bacteriology (Print). v. 189, p. 3166-3175, 2007. Qualis: A3
53.	Yu, G.X. ; Snyder, E.E. ; Boyle, S.M. ; Crasta, O.R. ; Czar, M. ; Mane, S.P. ; Purkayastha, A. ; Sobral, B. ; Setubal, J.C.. A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case. Nucleic Acids Research. v. 35, p. 3953-3962, 2007. Qualis: A1

2006

1.	DURHAM, A. M.; ALBRECHT, L. ; Emilio F. Merino ; HOFFMANN, E. H. ; URBANO, M. ; de Mattos Ferreira, R.G. ; OSAKABE, A. L. ; Dalla Martha, R.C. ; Ramharter, M. ; FERREIRA, J. E. ; Hernando A. del Portillo ; WUNDERLICH, G.. Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates. Molecular and Biochemical Parasitology (Print). v. 150, p. 157-165, 2006. Qualis: A4
2.	ALCÂNTARA, P. H. N. ; MARTIN, L. ; SILVA, C. O. ; DIETRICH, S. M. C. ; BUCKERIDGE, M. S.. Purification of a beta-galactosidase from cotyledons of Hymenaea courbaril L. (Leguminosae. Enzyme properties and biological function. Plant Physiology and Biochemistry (Paris). v. 44, p. 619-627, 2006. Qualis: A1
3.	Almeida E.M. ; COSTA, P. F. ; BUCKERIDGE, M. S. ; ALVES, M. A. S.. Potential bird dispersers of Psychotria in an area of Atlantic Forest at Ilha Grande, RJ, Southeast Brazil: a biochemical analysis of the fruits. BRAZILIAN JOURNAL OF BIOLOGY, São Paulo. v. 66, n. 1, p. 29-41, 2006. Qualis: Não identificado (BRAZILIAN JOURNAL OF BIOLOGY, SÃO PAULO)
4.	ARAÚJO, L. V. ; SOARES, M. A. ; TANURI, A. ; OLIVEIRA, S. M. ; CHEQUER, P. ; SABINO, E. C. ; FERREIRA, J. E.. DBCollHIV: A Database System for Collaborative HIV analysis in Brazil. GENETICS AND MOLECULAR RESEARCH. v. 5, p. 203-215, 2006.Qualis: B3
5.	BARRETO, C. C. ; ARAÚJO, L. V. ; FERREIRA, J. E. ; SABINO, E. C.. Trends in Antiretroviral Drug Resistance and Clade Distributions Among HIV-1--Infected Blood Donors in Sao Paulo, Brazil. JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES. v. 41, n. 3, p. 388-341, 2006. Qualis: A1 (JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES)
6.	BATISTA, L. F. Z. ; CHIGANCAS, V. ; BRUMATTI, G. P. ; AMARANTES-MENDES, G. ; MENCK CF. Involvement of DNA replication in ultraviolet-induced apoptosis of mammalian cells.. Apoptosis (London). v. 11, p. 1139-1148, 2006. Qualis: A1
7.	BECKER, C. ; LACCHINI, S. ; MUOTRI, A. R. ; SILVA, G. ; CASTELLI, J. ; VASSALLO, P. ; MENCK CF ; KRIEGER, J.. Skeletal muscle cells expressing VEGF induce capillary formation and reduce cardiac injury in rats. International Journal of Cardiology. v. 113, p. 348-354, 2006. Qualis: A3
8.	BERRA, C. M. ; MENCK CF ; MASCIO, P.. Oxidative stress, genome lesions and signaling pathways in cell cycle control, in press. Química Nova (Online). v. 29, p. 1340-1344, 2006.Qualis: A4
9.	BRASCHI, Simon ; CURWEN, RACHEL S. ; ASHTON, PETER D. ; Verjovski-Almeida, Sergio ; WILSON, Alan. The tegument surface membranes of the human blood parasiteSchistosoma mansoni: A proteomic analysis after differential extraction. Proteomics (Weinheim. Print). v. 6, p. 1471-1482, 2006. Qualis: Não identificado (PRINT))
10.	CARVALHO, Sidney Jurado de ; GHIOTTO, Renato Carlos Tonin ; Da SILVA, F. L. B.. Monte Carlo and modified Tanford-Kirkwood results for macromolecular electrostatic calculations. Journal of Physical Chemistry B, ACS. v. 110, p. 8832-8839, 2006. Qualis: A2 (JOURNAL OF PHYSICAL CHEMISTRY B)
11.	Da SILVA, F. L. B.; LUND, Mikael ; JÖNSSON, Bo ; ÅKESSON, Torbjörn. On the Complexation of Proteins and Polyelectrolytes. Journal of Physical Chemistry B, ACS. v. 110, n. 9, p. 4459-4464, 2006. Qualis: A2 (JOURNAL OF PHYSICAL CHEMISTRY B)
12.	DE OLIVEIRA, FRANCISCO MEIRELLES BASTOS ; DE ABREU DA SILVA, ISABEL CAETANO ; RUMJANEK, FRANKLIN DAVID ; DIAS-NETO, EMMANUEL ; GUIMARÃES, PEDRO EDSON MOREIRA ; Verjovski-Almeida, Sergio ; ?TROS, MICHAL ; FANTAPPIÉ, MARCELO ROSADO. Cloning the genes and DNA binding properties of High Mobility Group B1 (HMGB1) proteins from the human blood flukes Schistosoma mansoni and Schistosoma japonicum. Gene (Amsterdam). v. 377, p. 33-45, 2006. Qualis: A4
13.	DEMARCO, Ricardo ; Oliveira, Katia C. ; Venancio, Thiago M. ; Verjovski-Almeida, Sergio. Gender biased differential alternative splicing patterns of the transcriptional cofactor CA150 gene in Schistosoma mansoni. Molecular and Biochemical Parasitology (Print). v. 150, p. 123-131, 2006. Qualis: A4
14.	DEMARCO, Ricardo ; VENANCIO, Thiago M ; Verjovski-Almeida, Sergio. SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily.. BMC Evolutionary Biology (Online). v. 6, p. 89, 2006. Qualis: A1
15.	DURHAM, A. M.; HOFFMANN, E. H. ; MALAFRONTE, R. S. ; MORAES-AVILA, S. L. ; OSAKABE, A. L. ; WUNDERLICH, G. ; RIBOLLA, P. E. ; Hernando A. del Portillo ; URBANO, M.. Origins of sequence diversity in the malaria vaccine candidate merozoite surface protein-2 (MSP-2) in Amazonian isolates of Plasmodium falciparum. Gene (Amsterdam). v. 376, p. 224-230, 2006. Qualis: A4
16.	DURHAM, A. M.; Sobreira, T.J. ; GRUBER, A.. TRAP: automated classification, quantification and annotation of tandemly repeated sequences. BIOINFORMATICS, Oxford, Inglaterra. v. 22, n. 3, p. 361-362, 2006. Qualis: Não identificado (BIOINFORMATICS, OXFORD, INGLATERRA)
17.	FEITOSA, FABIANA M. ; CALVO, ERIC ; MERINO, EMILIO F. ; Durham, Alan M. ; JAMES, ANTHONY A. ; DE BIANCHI, ANTONIO G. ; MARINOTTI, OSVALDO ; CAPURRO, MARGARETH L.. A transcriptome analysis of the Aedes aegypti vitellogenic fat body. Journal of Insect Science (Online). v. 6, p. 1-26, 2006. Qualis: C
18.	FOLGUEIRA, M. A. A. K. ; SAMAIA, H. B. ; KATAYAMA, M. L. H. ; PATRÃO, D. F. C. ; CARRARO, D. M. ; MOURÃO NETO, M. ; BARBOSA, E. M. ; CALDEIRA, J. R. F. ; ABREU, A. P. S. ; LYRA, E. C. ; KAIANO, J. ; MOTA, L. D. ; CAMPOS, A. H. ; MACIEL, M. S.. Gene expression profiling of clinical stages II and III breast cancer. Brazilian Journal of Medical and Biological Research. v. 39, p. 1101-1103, 2006. Qualis: A4
19.	FONSECA, R. S. ; CARRARO, D. M. ; SAMAIA, H. B.. Mining ORESTES no-match database: can we still contribute to cancer transcriptome?. Genetics and Molecular Research, in press. v. 31, p. 24-32, 2006.Qualis: Não identificado (GENETICS AND MOLECULAR RESEARCH, IN PRESS)
20.	FUJITA, A.; SATO, João Ricardo ; RODRIGUES, Leonardo de Oliveira ; FERREIRA, Carlos Eduardo ; SOGAYAR, Mari Cleide. Evaluating different methods of microarray data normalization. BMC Bioinformatics. v. 7, p. 0/469, 2006. Qualis: A1
21.	Godoi, P. H. C. ; Galhardo, R. S. ; LUCHE, D. D. ; Van Sluys, M.-A. ; MENCK CF ; Oliva, G.. Structure of the Thiazole Biosynthetic Enzyme THI1 from Arabidopsis thaliana. The Journal of Biological Chemistry. v. 281, p. 30957-30966, 2006. Qualis: A1
22.	ITALIANO, I. ; FERREIRA, J. E.. Synchronization Options for Data Warehouse Designs. COMPUTER. v. 39, p. 53-57, 2006. Qualis: A2
23.	KOIDE, T.; SALEM-IZACC, S. ; Gomes, S. L. ; Vencio, R.Z.N.. SpotWhatR: a user-friendly microarray data analysis system.. Genetics and Molecular Research. v. 5, p. 93-107, 2006.Qualis: B3
24.	KOIDE, T.; VENCIO, R. ; Gomes, S. L.. Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa.. Journal of Bacteriology (Print). v. 188, p. 5821-5830, 2006. Qualis: A3
25.	LIMA-BESSA, K. ; CHIGANCAS, V. ; STARY, A. ; KANOUCHE, P. ; SARASIN, A. ; ARMELINI, M. ; JACYSYN, J. ; AMARANTES-MENDES, G. ; AL, E. ; MENCK CF. Adenovirus mediated transduction of the human DNA polymerase eta cDNA. DNA Repair. v. 5, p. 925-934, 2006. Qualis: A1
26.	LISBOA, C. G. ; TONINI, P. P. ; TINÉ, M. A. S. ; BUCKERIDGE, M. S.. Endo-beta-mannanase from the endosperm of seeds of Sesbania virgata (Cav.) Pers. (Leguminosae): purification, characterisation and its dual role in germination and early seedling growth. Brazilian Journal of Plant Physiology. v. 18, p. 269-280, 2006. Qualis: A4 (INDIAN JOURNAL OF PLANT PHYSIOLOGY)
27.	LORENZINI, D ; SILVAJR, P ; SOARES, M ; ARRUDA, P ; SETUBAL, J ; DAFFRE, S. Discovery of immune-related genes expressed in hemocytes of the tarantula spider Acanthoscurria gomesiana. Developmental and Comparative Immunology. v. 30, p. 545-556, 2006. Qualis: A2
28.	MALAVAZI, I. ; SAVOLDI, M. ; DIMAURO, S. M. ; MENCK CF ; HARRIS, S. D. ; Goldman MH ; Goldman GH. Transcriptome analysis of Aspergillus nidulans exposed to camptothecin-induced DNA damage.. Eukaryotic Cell. v. 5, p. 1688-1704, 2006. Qualis: Não identificado (EUKARYOTIC CELL)
29.	MARCHETTO, M. ; CORREAL, R. ; MENCK CF ; MUOTRI, A. R.. Functional lentiviral vectors for xeroderma pigmentosum gene therapy. Journal of Biotechnology. v. 126, p. 424-430, 2006. Qualis: A3
30.	MARQUES, D. A. ; FOGLIO, M. A. ; MORGANTE, P. G. ; SLUYS MAV. ; SHEPHERD, S. L. K.. Biotechnology approaches for production of antiulcerogenic dihydro-epideoxyarteannin B isolated from Artemisia annua L.. Revista Brasileira de Farmacognosia. v. 16, p. 291-299, 2006.Qualis: A4
31.	Marques, Maria Rita ; Buckeridge, Marcos S. ; Braga, Marcia R. ; Dietrich, Sonia M. C.. Characterization of an extracellular endopolygalacturonase from the saprobe Mucor ramosissimus Samutsevitsch and its action as trigger of defensive response in tropical plants. Mycopathologia (1975. Print). v. 162, p. 337-346, 2006. Qualis: Não identificado (PRINT))
32.	MEDINA-SILVA, R. ; BARROS, M. ; GALHARDO, R. ; NETTO, L. E. S. ; COLEPICOLO, P. ; MENCK CF. Heat stress promotes mitochondrial instability and oxidative responses in yeast deficient in thiazole biosynthesis.. Research in Microbiology (Paris). v. 157, n. 3, p. 275-281, 2006. Qualis: A4
33.	MERINO, E. F. ; FERNANDEZ-BECERRA, C. ; DURHAM, A. M. ; FERREIRA, J. E. ; TUMILASCI, V. F. ; DARC-NEVES, J. ; DADARIO, A. ; SILVA-NUNES, M. ; FERREIRA, M. U. ; WICKRAMARACHCHI, T. A. ; PORTILLO, H. A.. Multi-character population study of the vir subtelomeric multigene superfamily of Plasmodium vivax, a major human malaria parasite. Molecular and Biochemical Parasitology (Print). v. 149, p. 10-16, 2006. Qualis: A4
34.	OLIVEIRA JUNIOR, C. F. DE ; BRAGA, M. R. ; BUCKERIDGE, M. S.. Efeitos de oligossacarídeos de xiloglucano sobre o metabolismo extracelular de Rudgea jasminoides durante o crescimento. Hoehnea (São Paulo), São Paulo. v. 33, n. 2, p. 239-246, 2006.Qualis: Não identificado (HOEHNEA , SÃO PAULO)
35.	Oliveira Junior, Clovis José Fernandes de ; Braga, Marcia Regina ; Buckeridge, Marcos Silveira. Isolamento de oligossacarídeos de xiloglucano de dicotiledôneas através de hidrólise enzimática e cromatografia de exclusão molecular. Brazilian Journal of Botany. v. 29, p. 391-397, 2006. Qualis: B1
36.	OSMAN, Ahmed ; NILES, EDWARD G. ; Verjovski-Almeida, Sergio ; LoVerde, Philip T.. Schistosoma mansoni TGF-β Receptor II: Role in Host Ligand-Induced Regulation of a Schistosome Target Gene. PLoS Pathogens. v. 2, p. e54, 2006. Qualis: A1
37.	PACHECO, F. H. T. ; SILVA-STENICO, M. E. ; SILVA, D. M. ; Van Sluys, M. A.. Characterization of Agrobacterium tumefaciens Strains Isolated from Brazilian Plant Species. American Journal of Plant Physiology. v. 2, p. 142-150, 2006.Qualis: Não identificado (AMERICAN JOURNAL OF PLANT PHYSIOLOGY)
38.	PARMIGIANI, R. B. ; BETTONI, F. ; VIBRANOVSKI, M. D. ; LOPES, M. H. ; MARTINS, W. K. ; CUNHA, I. W. ; SOARES, F. A. ; SIMPSON, A. J. G. ; DE SOUZA, S. J. ; CAMARGO, A. A.. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Proceedings of the National Academy of Sciences of the United States of America (Online). v. 103, p. 18066-18071, 2006. Qualis: A1
39.	PEIXOTO, Bernardo Rodrigues ; VÊNCIO, Ricardo Z N ; EGIDIO, Camila Moura ; MOTA-VIEIRA, Luisa ; VERJOVSKI-ALMEIDA, Sergio ; REIS, EM. Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays. BMC Genomics. v. 7, n. 1, p. 35, 2006. Qualis: A2
40.	PEREIRA, G. S. P. ; BRANDÃO, R. M. ; GIULIATTI, S. ; ZAGO, M. A. ; SILVA JUNIOR, W. A.. Gene Class Expression: analysis tool of Gene Ontology terms with gene expression data. Genetics and Molecular Research. v. 5, n. 1, p. 108-114, 2006.Qualis: B3
41.	PEREIRA, T. V. ; Rudnichi, M ; SOLER, J. M. P. ; KRIEGER, J. E.. Meta-analysis of aspirin for the prevention of preeclampsia: do the main randomized controlled trials support an association between low-dose aspirin and a reduced risk of developing preeclampsia?. Clinics. v. 61, p. 179-182, 2006.Qualis: B4
42.	PONTES, Elizangela R ; MATOS, Livia C ; SILVA, Eloisio A da ; XAVIER, Leandro S ; DIAZ, Bruno L ; SMALL, Isabelle A ; REIS, EM ; VERJOVSKI-ALMEIDA, Sergio ; BARCINSKI, Marcello A ; GIMBA, Etel R. Auto-antibodies in prostate cancer: Humoral immune response to antigenic determinants coded by the differentially expressed transcripts FLJ23438 and VAMP3. The Prostate (Print). v. 66, n. 14, p. 1463-1473, 2006. Qualis: A2
43.	Reis LF ; SLUYS MAV. ; Garrat RC ; Pereira HM ; Teixeira MM. GMOs: building the future on the basis of past experience. Anais da Academia Brasileira de Ciências. v. 78, p. 667-686, 2006. Qualis: A2
44.	RIBEIRO-DOS-SANTOS, GABRIELA ; Verjovski-Almeida, Sergio ; LEITE, LUCIANA C. C.. Schistosomiasis-a century searching for chemotherapeutic drugs. Parasitology Research (1987. Print). v. 99, p. 505-521, 2006. Qualis: Não identificado (PRINT))
45.	SACCARO-JUNIOR, N. L. ; SLUYS MAV. ; VARANI, A. M. ; ROSSI, M.. MudrA-like sequences from rice and sugarcane cluster as two bona fide transposon clades and two domesticated transposases.. Gene (Amsterdam). v. 6, p. in press, 2006. Qualis: A4
46.	SETUBAL, J. C. Lipoprotein computational prediction in spirochaetal genomes. Microbiology (Reading). v. 152, p. 113-121, 2006. Qualis: B1
47.	SILVA, A. M. DA ; AIDAR, M. P. M. ; BUCKERIDGE, M. S.. Caracterização parcial dos beta-glucanos ao longo do desenvolvimento foliar em Brachiaria decumbens Stapf. Hoehnea (São Paulo), São Paulo. v. 33, n. 1, p. 99-105, 2006.Qualis: Não identificado (HOEHNEA , SÃO PAULO)
48.	SOLER, J. M. P.; PEREIRA, A. C.. BiostatisticsTeaching in the New Genome Era. Proceedings of the Seventh International Conference on teaching Statistics. v. 4C, p. 1-5, 2006.Qualis: Não identificado (PROCEEDINGS OF THE SEVENTH INTERNATIONAL CONFERENCE ON TEACHING STATISTICS)
49.	SOLER, J. M. P.; PEREIRA, A. C. ; TÔRRES, C. H. ; KRIEGER, J. E.. Gene by environment QTL mapping through multiple trait analyses in blood pressure salt-sensitivity: identification of a novel QTL in rat chromosome 5. BMC Medical Genetics. v. 22, p. 10.1186/1471-23, 2006.Qualis: A4
50.	TINÉ, M. A. S. ; SILVA, C. O. ; LIMA, D. U. DE ; Carpita NC ; BUCKERIDGE, M. S.. Fine structure of a mixed-oligomer storage xyloglucan from seeds of Hymenaea courbaril. Carbohydrate Polymers, Irlanda. v. 66, p. 444-454, 2006. Qualis: Não identificado (CARBOHYDRATE POLYMERS, IRLANDA)
51.	TONINI, P. P. ; LISBOA, C. G. ; Frisch L ; Mercier, H. ; VIVEIROS, S. C. M. ; BUCKERIDGE, M. S.. Effect of abscisic acid on galactomannan degradation and endo-beta-mannanase activity in seeds of Sesbania virgata (Cav.) Pers.. Trees (Berlin). v. 20, p. 669-678, 2006. Qualis: A2
52.	Vencio, R.Z.N. ; KOIDE, T. ; Gomes, S. L. ; PEREIRA, CA. BayGO: Bayesian analysis of ontology term enrichment in microarray data.. BMC Bioinformatics. v. 7, p. 86, 2006. Qualis: A1
53.	VIBRANOVSKI, M. D.; SAKABE, N. J. ; de SOUZA, S. J.. A possible role of exon-shuffling in the evolution of signal peptides of human proteins. FEBS LETTERS. v. 580, n. 6, p. 1621-1624, 2006. Qualis: A2

2005

1.	ALTHAUS, Lilian Karenina ; ALBERTON, Geraldo Camilo ; GUIMARAES, A. M. S. ; FIAMETTI, Amarildo. Exame macroscópcio das articulações de suínos artríticos no abatedouro. Archives of Veterinary Science. v. 10, n. 1, p. 13-19, 2005.Qualis: B2
2.	ARAÚJO, P. G. ; ROSSI, M. ; JESUS, Erika Maria de ; SACCARO-JUNIOR, N. L. ; KAJIHARA, D. ; et al ; CHABREGAS, S. M. ; ULIAN, E. C. ; MENOSSI, M. ; SLUYS MAV.. Transcriptionally active transposable elements in recent hybrid sugarcane.. Plant Journal. v. 44, n. 5, p. 707-717, 2005. Qualis: A1
3.	ARMELINI, M. ; MUOTRI, A. R. ; MARCHETTO, M. ; LIMA-BESSA, K. ; SARASIN, A. ; MENCK CF. Restoring DNA repair capacity of cells from three distinct diseases by XPD gene recombinant adenovirus. Cancer Gene Therapy, England. v. 12, n. 4, p. 389-396, 2005. Qualis: Não identificado (CANCER GENE THERAPY, ENGLAND)
4.	BERALDO, F. H ; ALMEIDA, F. M. ; DA SILVA, A. M. ; GARCIA, C.R.S.. Cyclic AMP and calcium interplay as second messengers in melatonin-dependent regulation of Plasmodium falciparum cell cycle. Journal of Cell Biology. v. 170, n. 4, p. 551-557, 2005. Qualis: A1 (THE JOURNAL OF CELL BIOLOGY)
5.	BRENTANI, RICARDO R. ; CARRARO, DIRCE MARIA ; Verjovski-Almeida, Sergio ; Reis, Eduardo M. ; NEVES, E. JORDÃO ; DE SOUZA, SANDRO J. ; CARVALHO, ALEX F. ; BRENTANI, Helena ; REIS, LUIZ F.L.. Gene expression arrays in Cancer Research: Methods and Applications.. Critical Reviews in Oncology/Hematology, Holanda. v. 54, n. 2, p. 95-105, 2005. Qualis: Não identificado (CRITICAL REVIEWS IN ONCOLOGY/HEMATOLOGY, HOLANDA)
6.	BUCKERIDGE, M. S.; HUTCHEON, I. ; REID, J. S. G.. The role of exo-(1-4)-beta-galactanase in the mobilisation of polysaccharides from the cotyledonary cell walls of Lupinus angustifolius L. following germination.. Annals of Botany. v. 96, p. 435-444, 2005. Qualis: A1
7.	CHEN, J. ; CIVEROLO, E. L. ; SLUYS MAV. ; OLIVEIRA, M. C.. Genetic Discovery in Xylella fastidiosa Through Sequence Analysis of Selected Randomly Amplified Polymorphic DNAs. Current Microbiology. v. 50, n. 2, p. 78-83, 2005. Qualis: B1
8.	COSTA, R. M. A. ; RIOU, L. ; PAQUOLA, A. ; MENCK CF ; SARASIN, A.. Transcriptional profiles of unirradiated or UV-irradiated human cells expressing either the cancer-prone XPB/CS allele or the non cancer-prone XPB/TTD allele. Oncogene (Basingstoke), Estados Unidos. v. 24, n. 8, p. 1359-1374, 2005. Qualis: Não identificado (ONCOGENE , ESTADOS UNIDOS)
9.	Da SILVA, F. L. B.; LINSE, S. ; JÖNSSON, Bo. The binding of charged ligands to macromolecules. Anomalous salt dependence.. Journal of Physical Chemistry B, The, ACS. v. 109, n. 5, p. 2007-2013, 2005. Qualis: Não identificado (JOURNAL OF PHYSICAL CHEMISTRY B, THE, ACS)
10.	DEMARCO, Ricardo ; MACHADO, ABIMAEL A. ; BISSON-FILHO, ALEXANDRE W. ; Verjovski-Almeida, Sergio. Identification of 18 new transcribed retrotransposons in Schistosoma mansoni. Biochemical and Biophysical Research Communications (Print). v. 333, p. 230-240, 2005. Qualis: A3
11.	DURHAM, A. M.; KASHIWABARA, A. Y. ; MATSUNAGA, F. ; AHAGON, P. ; RAINONE, F. ; VARUZZA, L. ; GRUBER, A.. EGene: a configurable pipeline generation system for automated sequence analysis. BIOINFORMATICS, Bioinformatics Advance Access. v. 21, p. 2812-2813, 2005. Qualis: Não identificado (BIOINFORMATICS, BIOINFORMATICS ADVANCE ACCESS)
12.	Freitas, R.A. ; Martin, S. ; Santos, G.L. ; Valenga F. ; BUCKERIDGE, M. S. ; Reicher, F. ; Sierakowski, M.R.. Physico-chemical properties of seed xyloglucans from different sources. Carbohydrate Polymers. v. 60, n. 4, p. 507-514, 2005. Qualis: A1
13.	FUJITA, A.; MASSIRER, Katlin Brauer ; DURHAM, Alan Mitchell ; FERREIRA, Carlos Eduardo ; SOGAYAR, Mari Cleide. The GATO gene annotation tool for research laboratories.. Brazilian Journal of Medical and Biological Research (Impresso). v. 38, n. 11, p. 1571-1574, 2005. Qualis: A4
14.	GALHARDO, R. ; ROCHA, R. ; MARQUES, M. ; MENCK CF. A SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus. Nucleic Acids Research (Online), England. v. 33, n. 8, p. 2603-2614, 2005. Qualis: Não identificado (NUCLEIC ACIDS RESEARCH , ENGLAND)
15.	GIULIATTI, S.; FARIA JUNIOR, M. ; CAMARGO, F. ; CAMARGO, L. P. ; FRANÇA, S. C. ; SOARES, A. M.. An Algorithm to Classify Amino Acid Sequences into Protein Groups of Bothrops jararacussu Venomous Gland. Protein and Peptide Letters, Estados Unidos. v. 12, n. 4, p. 333-337, 2005. Qualis: Não identificado (PROTEIN AND PEPTIDE LETTERS, ESTADOS UNIDOS)
16.	GONCALVES, J. F. C. ; BARRETO, D. C. S. ; SANTOS JUNIOR, U. M. ; FERNANDES, A. V. ; SAMPAIO, P. T. B. ; BUCKERIDGE, M. S.. Growth, photosynthesis and stress indicators in young rosewood plants (Aniba rosaeodora Duck) under different light intensities. Brazilian Journal of Plant Physiology, Campinas. v. 17, n. 3, p. 325-334, 2005. Qualis: Não identificado (BRAZILIAN JOURNAL OF PLANT PHYSIOLOGY, CAMPINAS)
17.	GRANDBASTIEN, M. A. ; AUDEON, C. ; BONNIVARD, E. ; CASACUCERTA, J. M. ; CHALHOUB, B. ; COSTA, A. P. P. ; et al ; SLUYS MAV. ; MIHRI, C.. Stress Activation And Genomic Impact Of Tnt1 Retrotransposons In Solanaceae. Cytogenetic and Genome Research. v. 110, n. 1-4, p. 229-241, 2005. Qualis: A4
18.	HANCE, M. E. ; Czar, M. J. ; Azad, Abdu F. ; Purkayastha, A. ; Snyder, Eric E. ; Crasta, O. R. ; SETUBAL, J. C. ; Sobral, B. W.. The Pathogen Resource Integration Center: Implications for Rickettsial Research. Annals of the New York Academy of Sciences. v. 1063, p. 459-465, 2005. Qualis: A1
19.	HÜNEMEIER, T.; NEVES, A. G. ; SALZANO, F. M. ; NORBERG, I. ; HILL, K. ; HURTADO, A. M. ; CARNESE, F. R. ; GOICOECHEA, A. S. ; Hutz, M. ; Chies, JAB. T-Cell and chemokine receptor variation in South Amerindian populations. American Journal of Human Biology. v. 17, p. 515-518, 2005. Qualis: A1
20.	LEVANOGARCIA, Julio ; Verjovski-Almeida, S. ; DASILVA, Ana C R. Mapping transposon insertion sites by touchdown PCR and hybrid degenerate primer.. BioTechniques. v. 38, p. 225-229, 2005.Qualis: A4
21.	LIMA, W. ; Lima, Wanessa C. ; Menck, C. F. M. ; Sluys, Marie-Anne Van ; Menck, Carlos F.M.. Non-gamma-proteobacteria gene islands contribute to the Xanthomonas genome. Journal of Integrative Biology / Omics (Larchmont). v. 9, n. 2, p. 160-172, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS)
22.	Lima-Bessa, Keronninn M. ; Menck, Carlos F.M.. Skin Cancer: Lights on Genome Lesions. Current Biology, England. v. 15, n. 2, p. R58-R61, 2005. Qualis: Não identificado (CURRENT BIOLOGY, ENGLAND)
23.	Martins, M.C.M. ; VIEIRA, C. C. J. ; SILVA, C. O. ; BUCKERIDGE, M. S.. Carboidratos na bebida do café preparado sob diferentes processos. Ciência e Tecnologia de Alimentos. v. 25, n. 2, p. 382-386, 2005. Qualis: B1 (CIENCIA E TECNOLOGIA DE ALIMENTOS)
24.	MONTEIROVITORELLO, C B ; OLIVEIRA, Mariana Cabral de ; ZERILLO, M. M. ; VARANI, A. M. ; CIVEROLO, E. L. ; SLUYS MAV.. Xylella and Xanthomonas mobil`omics. Journal of Integrative Biology / Omics (Larchmont). v. 9, n. 2, p. 146-159, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS)
25.	Moreira, Leandro M. ; De Souza, Robson F. ; Digiampietri, Luciano A. ; Da Silva, Ana C.R. ; Setubal, Joao C.. Comparative Analyses of Xanthomonas and Xylella Complete Genomes. Journal of Integrative Biology / Omics (Larchmont). v. 9, n. 1, p. 43-76, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS)
26.	MORGANTE, P. G. ; BERRA, C. M. ; NAKABASHI, M. ; COSTA, R. M. A. ; MENCK CF ; M.A. VanSluys. Functional XPB/RAD25 redundancy in Arabidopsis genome: characterization of AtXPB2 and expression analysis.. Gene (Amsterdam), Netherlands. v. 344, p. 93-103, 2005. Qualis: Não identificado (GENE , NETHERLANDS)
27.	PAPINI-TERZI, Flavia ; ROCHA, Flavia R. ; VENCIO, Ricardo Z. N. ; OLIVEIRA, Katia C. ; FELIX, Juliana M. ; VINCENTINI, Renato ; ROCHA, Cristiane S. ; SIMÕES, Ana Carolina Quirino ; ULIAN, Eugenio C. ; Di MAURO, Sônia M.Z. ; DA SILVA, A. M. ; PEREIRA, Carlos A. B. ; MENOSSI, Marcelo ; SOUZA, Glaucia Mendes. Transcription profiling of signal transduction-related genes in sugarcane tissues.. DNA Research. v. 12, n. 1, p. 27-38, 2005. Qualis: A1
28.	PASHALIDIS, Stefano ; MOREIRA, Leandro M. ; ZAINI, Paulo A. ; CAMPANHARO, Joao C ; ALVES, Lucia M C ; CIAPINA, Luciane P ; VENCIO, Ricardo Z. N. ; LEMOS, Eliana G M ; DA SILVA, A. M. ; DA SILVA, Ana C. R.. Whole-genome expression Profiling of Xylella fastidiosa in response to growth on glucose.. OMICS: Journal of Integrative Biology. v. 9, p. 77-90, 2005. Qualis: Não identificado (OMICS: JOURNAL OF INTEGRATIVE BIOLOGY)
29.	PAULA, A. C. C. F. ; Souza, R.V. ; FIGUEIREDO-RIBEIRO, R. C. L. ; BUCKERIDGE, M. S.. Hypoglycemic activity of polysaccharide fractions containing b-glucan in different parts of plants of Rhynchelytrum repens (Willd.) C. E. Hubb., Poaceae. Brazilian Journal of Medical and Biological Research. v. 38, n. 6, p. 885-893, 2005. Qualis: A4
30.	REIS, EM; OJOPI, Elida P.b ; ALBERTO, Fernando L. ; RAHAL, Paula ; TSUKUMO, Fernando ; MANCINI, Ulisses M ; GUIMARÃES, Gustavo S ; THOMPSON, Gloria M A ; CAMACHO, Cleber ; MIRACCA, Elisabete C. ; CARVALHO, André L ; MACHADO, Abimael A ; PAQUOLA, Apua C. M. ; CERUTTI, Janete M. ; DASILVA, Aline M. ; PEREIRA, Gonçalo G. ; VALENTINI, Sandro R. ; NAGAI, Maria Aparecida ; KOWALSKI, Luiz Paulo ; VERJOVSKI-ALMEIDA, Sergio ; et.al. Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck and thyroid cancer.. Cancer Research (Chicago, Ill.), EUA. v. 65, n. 5, p. 1693-1699, 2005. Qualis: Não identificado (CANCER RESEARCH , EUA)
31.	Reis, Eduardo M. ; LOURO, Rodrigo ; NAKAYA, HELDER I. ; Verjovski-Almeida, Sergio. As Antisense RNA Gets Intronic. Journal of Integrative Biology / Omics (Larchmont), New Rochelle, NY. v. 9, n. 1, p. 2-12, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS , NEW ROCHELLE, NY)
32.	RIBEIRO, D. ; FARIAS, L. P. ; ALMEIDA, J. D. ; KASHIWABARA, P. M. ; RIBEIRO, A. F. C. ; SILVA FILHO, M. C. ; MENCK, C. F. M. ; SLUYS MAV.. Functional characterization of the thi1 promoter region from Arabidopsis thaliana. Journal of Experimental Botany, England. v. 56, n. 417, p. 1797-1804, 2005. Qualis: Não identificado (JOURNAL OF EXPERIMENTAL BOTANY, ENGLAND)
33.	SAMAIA, H. B.; GOMES, L. I. ; ESTEVES, G. H. ; CARVALHO, A. F. ; CRISTO, E. B. ; HIRATA JÚNIOR, R. ; MARQUES, S. M. ; CAMARGO, L. P. ; PELOSOF, A. ; ZITRON, C. ; SALLUM, R. A. ; MONTAGNINI, A. ; SOARES, F. A. ; NEVES, E. J. ; REIS, L. F. L.. Expression Profile of Malignant and Nonmalignant Lesions of Esophagus and Stomach: Differential Activity of Functional Modules Related to Inflammation and Lipid Metabolism. Cancer Research (Chicago, Ill.). v. 65, p. 7127-7136, 2005. Qualis: A1
34.	SAMAIA, H. B.; PATRÃO, D. F. C. ; CARRARO, D. M. ; SOARES, F. A. ; FOLGUEIRA, M. A. A. K. ; BRENTANI, M. M. ; REIS, L. F. L. ; CAMARGO, L. P. ; VÊNCIO, R. Z. N. ; BARBOSA, E. M.. Gene expression profile associated with response to doxorubicin-based therapy in breast cancer. Clinical Cancer Research, eua. v. 15, n. 11, p. 7434-7443, 2005.Qualis: A1 (CLINICAL CANCER RESEARCH)
35.	SETUBAL, J; MOREIRA, L ; DASILVA, A. Bacterial phytopathogens and genome science. Current Opinion in Microbiology. v. 8, p. 595-600, 2005. Qualis: A1
36.	SILVA, P. J. S. ; HASHIMOTO, R. F. ; KIM, S. ; BARRERA, J. ; BRANDAO, L. O. ; SUH, E. ; DOUGHERTY, E. R.. Feature Selection Algorithms to Find Strong Genes. Pattern Recognition Letters. v. 26, n. 10, p. 1444-1453, 2005. Qualis: A2
37.	SIMOES, Ana C ; DASILVA, Aline M ; Verjovski-Almeida, S. ; REIS, Eduardo M. SAM Method as an Approach to Select Candidates for Human Prostate Cancer Markers. Lecture Notes In Bioinformatics. v. 3594, p. 202-205, 2005.Qualis: Não identificado (LECTURE NOTES IN BIOINFORMATICS)
38.	STOLF, B. S. ; ABREU, C. M. ; ARAUJO, M. B. M. ; DELLAMANO, M. ; MARTINS, W. K. ; CARVALHO, M. B. ; CURADO, M. P. ; DÍAZ, J. P. ; FABRI, A. ; SAMAIA, H. B. ; CARVALHO, A. F. ; SOARES, F. A. ; KOWALSKI, L. P. ; HIRATA JÚNIOR, R. ; REIS, L. F. L.. Expression profile of malignant and non-malignant diseases of the thyroid gland reveals altered expression of a common set of genes in goiter and papillary carcinomas.. Cancer Letters. v. 227, p. 59-73, 2005. Qualis: A1
39.	VENANCIO, Thiago M ; DEMARCO, Ricardo ; OLIVEIRA, Katia Cp ; SIMOES, Ana C ; DASILVA, Aline M ; Verjovski-Almeida, S.. Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project. Lecture Notes In Bioinformatics. v. 3594, p. 198-201, 2005.Qualis: Não identificado (LECTURE NOTES IN BIOINFORMATICS)
40.	Vencio, R.Z.N. ; KOIDE, T.. HTself: Self-Self Based Statistical Test for Low Replication Microarray Studies.. DNA Research. v. 12, p. 211-214, 2005. Qualis: A1
41.	VIBRANOVSKI, M. D.; SAKABE, N. J. ; OLIVEIRA, R. S. ; de SOUZA, S. J.. Signs of Ancient and Modern Exon-Shuffling Are Correlated to the Distribution of Ancient and Modern Domains Along Proteins. JOURNAL OF MOLECULAR EVOLUTION, Estados Unidos. v. 61, n. 3, p. 341-350, 2005. Qualis: Não identificado (JOURNAL OF MOLECULAR EVOLUTION, ESTADOS UNIDOS)

2004

1.	BARRERA, J. ; CESAR JUNIOR, R. M. ; FERREIRA, J. E. ; GUBITOSO, M. D.. An environment for knowledge discovery in biology. COMPUTERS IN BIOLOGY AND MEDICINE, Washington, DC ,USA, July 2004. v. 34, n. 5, p. 371-459, 2004.Qualis: Não identificado (COMPUTERS IN BIOLOGY AND MEDICINE, WASHINGTON, DC ,USA, JULY 2004)
2.	BRAGA-NETO, U. ; HASHIMOTO, R. F. ; DOUGHERTY, E. R. ; NGUYEN, D. V. ; CARROLL, R. J.. Is Cross-Validation Better than Resubstitution for Ranking Genes. Bioinformatics (Oxford). v. 20, n. 2, p. 253-258, 2004. Qualis: A1
3.	BUCKERIDGE, M. S.; RAYON, C. ; URBANOWICZ, B. ; TINÉ, M. A. S. ; Carpita NC. Mixed Linkage (1→3),(1→4)-β- d -Glucans of Grasses. Cereal Chemistry, Saint Paul. v. 81, n. 1, p. 115-127, 2004. Qualis: Não identificado (CEREAL CHEMISTRY, SAINT PAUL)
4.	Carraro, D. M. ; Sredni, S.T. ; Maschietto, M. ; CASTRO, N. P. ; De Camargo, B. ; BRENTANI, H. P.. Applications of Microarray Technology in Clinic Oncology. Bioscience Journal (UFU. Impresso), Uberlândia, MG, Brazil. v. 20, n. Supplement, p. 53-58, 2004.Qualis: Não identificado (IMPRESSO), UBERLÂNDIA, MG, BRAZIL)
5.	CHIGANCAS, V. ; SARASIN, A. ; MENCK CF. CPD-photolyase adenovirus-mediated gene transfer in normal and DNA-repair-deficient human cells. Journal of Cell Science, England. v. 117, p. 3579-3592, 2004. Qualis: Não identificado (JOURNAL OF CELL SCIENCE, ENGLAND)
6.	DEMARCO, R. ; KOWALTOWSKI, A. T. ; MACHADO, A. A. ; SOARES, M. B. ; GARGIONI, C. ; KAWANO, T. ; RODRIGUES, V. ; MADEIRA, A. M. B. N. ; Wilson, R. A. ; MENCK, C. F. M. ; SETUBAL, J. C. ; DIAS-NETO, E. ; LEITE, L. C. C. ; Verjovski-Almeida, S.. Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with High Transcriptional Activities from the Human Parasite Schistosoma mansoni. Journal of Virology, estados unidos. v. 78, n. 6, p. 2967-2978, 2004. Qualis: Não identificado (JOURNAL OF VIROLOGY, ESTADOS UNIDOS)
7.	FERNANDEZ, S. ; KATSUYAMA, A. M. ; KASHIWABARA, A. Y. ; MADEIRA, A. M. B. N. ; DURHAM, A. M. ; GRUBER, A.. Characterization of SCAR markers of spp. of domestic fowl and construction of a public relational database (The SCARdb). FEMS MICROBIOLOGY LETTERS, Estados Unidos. v. 238, n. 1, p. 183-188, 2004. Qualis: Não identificado (OF DOMESTIC FOWL AND CONSTRUCTION OF A PUBLIC RELATIONAL DATABASE . FEMS MICROBIOLOGY LETTERS, ESTADOS UNIDOS)
8.	FIETTO, JULIANA L.R. ; DEMARCO, Ricardo ; NASCIMENTO, IVAN P. ; CASTRO, IESO M. ; CARVALHO, TÉCIA M.U. ; DE SOUZA, WANDERLEY ; Bahia, Maria T. ; ALVES, MARIA J.M. ; Verjovski-Almeida, Sergio. Characterization and immunolocalization of an NTP diphosphohydrolase of Trypanosoma cruzi. Biochemical and Biophysical Research Communications (Print). v. 316, p. 454-460, 2004. Qualis: A3
9.	HASHIMOTO, R. F.; KIM, S. ; SHMULEVICH, Ilya ; ZHANG, Wei ; BITTNER, M. L. ; DOUGHERTY, E. R.. Growing Genetic Regulatory Networks from Seed Genes. Bioinformatics (Oxford), Grã-Bretanha. v. 20, n. 8, p. 1241-1247, 2004. Qualis: Não identificado (BIOINFORMATICS , GRÃ-BRETANHA)
10.	HATANAKA, E. ; FURLANETO, C. J. ; RIBEIRO, F. P. ; SOUZA, G. M. ; CAMPA, A.. Serum amyloid A-induced mRNA expression and release of tumor necrosis factor-alpha (TNF-α) in human neutrophils. IMMUNOLOGY LETTERS. v. 91, p. 33-37, 2004. Qualis: A4
11.	HÜNEMEIER, T.; Chies, JAB ; NARDI, N. B. ; CRUZ, I. M. ; PERES, A.. T-cell receptor BV gene segment polymorphisms in healthy elderly individuals from the south of Brazil.. European Journal of Immunogenetics, Inglaterra. v. 31(2), p. 77-81, 2004.Qualis: Não identificado (EUROPEAN JOURNAL OF IMMUNOGENETICS, INGLATERRA)
12.	Kashima, Simone ; Roberto, Patrí­cia G. ; Soares, Andreimar M. ; Astolfi-Filho, Spartaco ; Pereira, José O. ; Giuliati, Silvana ; Jr., Milton Faria ; Xavier, Mauro A.S. ; Fontes, Marcos R.M. ; Giglio, José R. ; França, Suzelei C.. Analysis of Bothrops jararacussu venomous gland transcriptome focusing on structural and functional aspects11All sequence data reported in this paper will appear in the GenBank database under the following accession numbers: BOJU-I (AY 185200), BOJU-II (AY 185206), BOJU-III (AY 145836), BOJUMET-I (AY 55005), BOJUMET-II (AY 25584), BOJUMET-III (AY 258153), C-type lectin (AY 251283), serine-protease. Biochimie (Paris. Print). v. 86, p. 211-219, 2004. Qualis: Não identificado (PRINT))
13.	KOIDE, T.; da Silva Neto, J. F. ; Gomes, S. L. ; MARQUES, M. V.. Insertional transposon mutagenesis in the Xylella fastidiosa Citrus Variegated Chlorosis strain with transposome.. Current Microbiology. v. 48, p. 247-250, 2004. Qualis: B1
14.	KOIDE, T. ; ZAINI, P. A. ; MOREIRA, L. M. ; VENCIO, R. Z. N. ; MATSUKUMA, A. Y. ; DURHAM, A. M. ; TEIXEIRA, D. C. ; EL-DORRY, H. ; MONTEIRO, P. B. ; DA SILVA, A. C. R. ; Verjovski-Almeida, S. ; da SILVA, A. M. ; GOMES, S. L.. DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence.. Journal of Bacteriology (Print). v. 186, p. 5442-5449, 2004. Qualis: A3
15.	LIMA, D. U. DE ; Loh, W. ; BUCKERIDGE, M. S.. Xyloglucan?cellulose interaction depends on the sidechains and molecular weight of xyloglucan. Plant Physiology and Biochemistry (Paris), França. v. 42, n. 5, p. 389-394, 2004. Qualis: Não identificado (PLANT PHYSIOLOGY AND BIOCHEMISTRY , FRANÇA)
16.	LOURO, Rodrigo ; NAKAYA, Helder I. ; PAQUOLA, Apua C.m. ; MARTINS, Elizabeth A.l. ; DASILVA, Aline M. ; VERJOVSKI-ALMEIDA, Sergio ; REIS, EM. RASL11A, member of a novel small monomeric GTPase gene family, is differentially expressed in prostate tumors. Biochemical and Biophysical Research Communications, EUA. v. 316, n. 5, p. 618-627, 2004. Qualis: A3 (BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS)
17.	LOURO, Rodrigo ; NAKAYA, HELDER I. ; PAQUOLA, APUÃ C.M. ; MARTINS, ELIZABETH A.L. ; SILVA, ALINE M.DA ; Verjovski-Almeida, Sergio ; Reis, Eduardo M.. RASL11A, member of a novel small monomeric GTPase gene family, is down-regulated in prostate tumors.. Biochemical and Biophysical Research Communications, Estados Unidos. v. 316, n. 3, p. 618-627, 2004. Qualis: A3 (BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS)
18.	Marchetto, M. C. N. ; MUOTRI, A. R. ; BURNS, D. ; FRIEDBERG, E. ; Menck, C. F. M.. Gene transduction in skin cells: Preventing cancer in xeroderma pigmentosum mice. PNAS. Proceedings of the National Academy of Sciences of the United States of America, Estados Unidos. v. 101, n. 51, p. 17759-17764, 2004. Qualis: A1 (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA)
19.	MAYWORM, M. A. S. ; Salatino A ; BUCKERIDGE, M. S.. Chemical composition of seeds of Peltophorum dubium Vog., a legume tree from the Brazilian Caatinga with potential for sustainable use of biodiversity in semi-arid regions. Hoehnea (São Paulo), São Paulo. v. 31, n. 2, p. 175-179, 2004.Qualis: Não identificado (HOEHNEA , SÃO PAULO)
20.	MENEZES, Luis F C ; CAI, Yiqiang ; NAGASAWA, Yasuyuki ; SILVA, Ana M G ; WATKINS, Mary Lou ; DA SILVA, A. M. ; SOMLO, Stefan ; WOODFORD, Lisa M Guay ; GERMINO, Gregory G ; ONUCHIC, Luiz F. Polyductin, the PKHD1 gene product, comprises isoforms expressed in plasma membrane, primary cilium and cytoplasm. Kidney International, Estados Unidos da América. v. 66, n. 4, p. 1345-1355, 2004. Qualis: Não identificado (KIDNEY INTERNATIONAL, ESTADOS UNIDOS DA AMÉRICA)
21.	MONTEIRO-VITORELLO, Claudia B. ; Camargo, Luis E. A. ; Van Sluys, Marie A. ; Kitajima, João P. ; Truffi, Daniela ; do Amaral, Alexandre M. ; Harakava, Ricardo ; de Oliveira, Julio C. F. ; Wood, Derek ; de Oliveira, Mariana C. ; Miyaki, Cristina ; Takita, Marco A. ; da Silva, Ana C. R. ; Furlan, Luis R. ; Carraro, Dirce M. ; Camarotte, Giovana ; Almeida, Nalvo F. ; Carrer, Helaine ; Coutinho, Luiz L. ; SETUBAL, J. C. ; et.al. The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. Molecular Plant-Microbe Interactions, United States. v. 17, n. 8, p. 827-836, 2004. Qualis: Não identificado (MOLECULAR PLANT-MICROBE INTERACTIONS, UNITED STATES)
22.	SETUBAL, J. C.; SILVA, Ana Claudia Rasera da ; ALMEIDA JR, Nalvo Franco de ; FERRO, Jesus ; FURLAN, Luiz Roberto ; MOREIRA, Leandro ; SOUZA, Robson de ; OLIVEIRA, Julio Cezar de. COMPARATIVE GENOMICS ANALYSES OF CITRUS-ASSOCIATED BACTERIA. Annual Review of Phytopathology (Print), Estados Unidos. v. 42, p. 163-184, 2004. Qualis: Não identificado (ANNUAL REVIEW OF PHYTOPATHOLOGY , ESTADOS UNIDOS)
23.	NASCIMENTO, A. L. T. O. ; KO, A. I. ; MARTINS, E. A. L. ; MONTEIRO-VITORELLO, C. B. ; HO, P. L. ; HAAKE, D. A. ; Verjovski-Almeida, S. ; HARTSKEERL, R. A. ; MARQUES, M. V. ; OLIVEIRA, M. C. ; MENCK, C. F. M. ; LEITE, L. C. C. ; CARRER, H. ; COUTINHO, L. L. ; DEGRAVE, W. M. ; DELLAGOSTIN, O. A. ; EL-DORRY, H. ; FERRO, E. S. ; FERRO, M. I. T. ; FURLAN, L. R. ; et.al. Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.. Journal of Bacteriology, estados unidos. v. 186, n. 7, p. 2164-2172, 2004. Qualis: Não identificado (JOURNAL OF BACTERIOLOGY, ESTADOS UNIDOS)
24.	SETUBAL, J. C.; NASCIMENTO, Ana Lucia Tabet ; VERJOVSKI-ALMEIDA, Sergio ; SLUYS, Marie Anne Van ; MONTEIRO-VITORELLO, Claudia B. ; CAMARGO, Luis Eduardo Aranha ; DIGIAMPIETRI, Luciano A. ; HARTSKEERL, Rudy ; HO, Paulo Lee ; MARQUES, Marilis ; OLIVEIRA, Mariana Cabral de ; HAAKE, David ; MARTINS, Elizabeth. Genome features of Leptospira interrogans serovar Copenhageni.. Brazilian Journal of Medical and Biological Research. v. 37, n. 4, p. 459-477, 2004. Qualis: A4
25.	OIKAWA, M. K. ; BROINIZI, M. E. ; DERMAGOS, A. ; ARMELIN, H. A. ; FERREIRA, J. E.. GenFlow: generic flow for integration, management and analysis of molecular biology data. GENETICS AND MOLECULAR BIOLOGY, http://www.scielo.br/. v. 27, n. 4, p. 691-695, 2004. Qualis: Não identificado (GENETICS AND MOLECULAR BIOLOGY, HTTP://WWW.SCIELO.BR/)
26.	PINHEIRO, M. ; GALHARDO, R. ; LAGE, C. ; LIMA-BESSA, K. ; AIRES, K. ; MENCK CF. Different patterns of evolution for duplicated DNA repair genes in bacteria of the Xanthomonadales group. BMC Evolutionary Biology (Online), Inglaterra. v. 4, n. 1, p. 29-291, 2004. Qualis: Não identificado (BMC EVOLUTIONARY BIOLOGY , INGLATERRA)
27.	REIS, EM; NAKAYA, Helder Ikemoto ; LOURO, Rodrigo ; CANAVEZ, Flavio Canela ; FLATSCHART, Áurea V F ; ALMEIDA, Giulliana Tessarin ; EGIDIO, Camila Moura ; PAQUOLA, Apuã C M ; MACHADO, Abimael A ; FESTA, Fernanda ; YAMAMOTO, Denise ; ALVARENGA, Renato ; DASILVA, Camille C. ; BRITO, Glauber C. ; SIMON, Sérgio D. ; MOREIRA-FILHO, Carlos Alberto ; LEITE, Katia R. ; CAMARA-LOPES, Luiz H. ; CAMPOS, Franz S. ; GIMBA, Etel ; et.al. Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene (Basingstoke), England. v. 23, n. 39, p. 6684-6692, 2004. Qualis: Não identificado (ONCOGENE , ENGLAND)
28.	ROSSI, M. ; ARAÚJO, P. G. ; JESUS, Erika Maria de ; VARANI, A. M. ; SLUYS MAV.. Comparative analysis of sugarcane Mutator-like transposases. Molecular Genetics and Genomics. v. 272, p. 194-203, 2004. Qualis: A4
29.	SAKABE, N. J. ; VIBRANOVSKI, M. D. ; de SOUZA, S. J.. A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins. GENETICS AND MOLECULAR RESEARCH, Brasil. v. 3, n. 4, p. 532-544, 2004.Qualis: Não identificado (GENETICS AND MOLECULAR RESEARCH, BRASIL)
30.	Santos HP ; BUCKERIDGE, M. S.. The role of the storage carbon of cotyledons in the establishment of seedlings of Hymenaea courbaril L. under different light conditions. Annals of Botany, Bristol. v. 94, n. 6, p. 819-830, 2004. Qualis: Não identificado (ANNALS OF BOTANY, BRISTOL)
31.	SANTOS, H. P. DOS ; Purgatto, E. ; Mercier, H. ; BUCKERIDGE, M. S.. The Control of Storage Xyloglucan Mobilisation in Cotyledons of Hymenaea courbaril L.. PLANT PHYSIOLOGY, Estados Unidos. v. 135, n. 5, p. 287-299, 2004. Qualis: Não identificado (PLANT PHYSIOLOGY, ESTADOS UNIDOS)
32.	SOGAYAR, M. C. ; CAMARGO, A. A. ; FARIA JUNIOR, M. ; Giuliatti, S ; KOOP, L. ; The Ludwig_FAPESP Transcript Finishing Initiative. A Transcript Finishing Initiative for Closing Gaps in the Human Transcriptome. GENOME RESEARCH. v. 14, p. 1413-1423, 2004. Qualis: A1
33.	SOLER, J. M. P.; ROSA, F. H. F. P. ; CHIAVEGATTO, S. ; ANEAS, I. ; KRIEGER, J. E.. Use of Splines for Normalization of Microarray Gene Expression Data. Bioscience Journal, Especial,. p. 101-116, 2004.Qualis: Não identificado (BIOSCIENCE JOURNAL, ESPECIAL,)
34.	SOUZA, G. M. ; BUCKERIDGE, M. S.. Sistemas complexos: novas formas de ver a Botânica. Brazilian Journal of Botany, São Paulo. v. 27, n. 3, p. 407-419, 2004. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)
35.	Verjovski-Almeida, S.; DEMARCO, Ricardo. Genoma contra a esquistossomose. Scientific American Brasil, São Paulo. v. 28, p. 54-61, 2004.Qualis: Não identificado (SCIENTIFIC AMERICAN BRASIL, SÃO PAULO)
36.	Verjovski-Almeida, Sergio ; LEITE, LUCIANA C.C. ; DIAS-NETO, EMMANUEL ; MENCK, CARLOS F.M. ; WILSON, R.ALAN. Schistosome transcriptome: insights and perspectives for functional genomics. Trends in Parasitology, England. v. 20, n. 7, p. 304-308, 2004. Qualis: Não identificado (TRENDS IN PARASITOLOGY, ENGLAND)
37.	VINCENTZ, Michel ; CARA, F A ; OKURA, V K ; SILVA, F R da ; et al ; SLUYS MAV. ; NOBREGA, Francisco Gorgonio da ; ARRUDA, Paulo ; MENCK, Carlos Frederico Martins. Evaluation of monocot and eudicot divergence using the sugarcane transcriptome.. Plant Physiology (Bethesda), Estados Unidos. v. 134, n. 3, p. 951-959, 2004. Qualis: Não identificado (PLANT PHYSIOLOGY , ESTADOS UNIDOS)
38.	VÊNCIO, R. Z. N. ; SAMAIA, H. B. ; PATRÃO, D. F. C. ; PEREIRA, C. A. B.. Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE). BMC Bioinformatics. v. 31, n. 5, p. 119, 2004. Qualis: A1
39.	XU, PING ; WIDMER, GIOVANNI ; WANG, YINGPING ; OZAKI, LUIZ S. ; Alves, Joao M. ; Serrano, Myrna G. ; PUIU, DANIELA ; MANQUE, PATRICIO ; AKIYOSHI, DONNA ; MACKEY, AARON J. ; PEARSON, WILLIAM R. ; DEAR, PAUL H. ; BANKIER, ALAN T. ; PETERSON, DARRELL L. ; ABRAHAMSEN, MITCHELL S. ; KAPUR, VIVEK ; TZIPORI, SAUL ; Buck, Gregory A.. The genome of Cryptosporidium hominis. Nature (London). v. 431, p. 1107-1112, 2004. Qualis: A1

2003

1.	ANDRIOLI, Luiz Paulo M. ; ZAINI, Paulo A. ; Viviani W ; DA SILVA, A. M.. Dictyostelium discoideum protein phosphatase-1 catalytic subunit exhibits distinct biochemical properties. Biochemical Journal (London. 1984). v. 373, n. 3, p. 703-711, 2003. Qualis: Não identificado (1984))
2.	CARVALHO, A. BERNARDO ; D. Vibranovski, Maria ; W. CARLSON, JOSEPH ; E. CELNIKER, SUSAN ; A. HOSKINS, ROGER ; M. RUBIN, GERALD ; G. SUTTON, GRANGER ; D. ADAMS, MARK ; W. MYERS, EUGENE ; G. CLARK, ANDREW. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?. GENETICA. v. 117, p. 227-237, 2003. Qualis: A3
3.	CARVALHO, H. ; COSTA, R. M. A. ; CHIGANCAS, V. ; BRUMATTI, G. P. ; AMARANTES-MENDES, G. ; SARASIN, A. ; MENCK CF. The effect of cell confluence on ultraviolet light apoptotic responses in DNA repair-deficient cells. Mutation Research, Netherlands. v. 544, p. 159-166, 2003. Qualis: Não identificado (MUTATION RESEARCH, NETHERLANDS)
4.	CHABREGAS, S. M. ; LUCHE, D. D. ; MENCK, Carlos Frederico Martins ; SLUYS MAV. ; SILVA FILHO, M. C.. Differential usage of two in-frame translational start codons regulates subcellular localization of Arabidopsis thaliana THI1. Journal of Cell Science, England. v. 116, p. 285-291, 2003. Qualis: Não identificado (JOURNAL OF CELL SCIENCE, ENGLAND)
5.	COSTA, R. M. A. ; CHIGANCAS, V. ; GALHARDO, R. ; CARVALHO, H. ; MENCK CF. The eukaryotic nucleotide excision repair pathway. Biochimie (Paris), France. v. 85, n. 11, p. 1083-1099, 2003. Qualis: Não identificado (BIOCHIMIE , FRANCE)
6.	DEGASPERI, M. I. ; ITAYA, N. M. ; BUCKERIDGE, M. S. ; FIGUEIREDO-RIBEIRO, R. C. L.. Fructan degradation and hydrolytic activity in tuberous roots of Viguiera discolor Baker (Asteraceae), a herbaceous species from the cerrado. Brazilian Journal of Botany, São Paulo. v. 26, n. 1, p. 11-21, 2003. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)
7.	DEMARCO, Ricardo ; KOWALTOWSKI, ANDRE T ; MORTARA, Renato A ; Verjovski-Almeida, Sergio. Molecular characterization and immunolocalization of Schistosoma mansoni ATP-diphosphohydrolase. Biochemical and Biophysical Research Communications (Print). v. 307, p. 831-838, 2003. Qualis: A3
8.	Diego, V.P. ; Almasy, L. ; Dyer, T.D. ; SOLER, J. M. P. ; BLANGERO, J.. Strategy and model building in the fourth dimention: A null model for genotype x age interaction as a gaussian stationary stochastic process. BMC Genetic. 2003.Qualis: A3 (BMC GENETICS)
9.	Digiampietri, Luciano A ; MEDEIROS, Claudia Maria Bauzer ; Setubal, João C.. A data model for comparative genomics. Revista Tecnologia da Informação. v. 3, p. 35-40, 2003.Qualis: Não identificado (REVISTA TECNOLOGIA DA INFORMAÇÃO)
10.	DURHAM, A. M.; Emilio F. Merino ; FERNANDEZ-BECERRA, C. ; MADEIA, A. M. B. N. ; LIMA, A. M. ; GRUBER, A. ; Hernando A. del Portillo. Pilot survey of expressed sequence tags (ESTs) from the asexual blood stages of Plasmodium vivax in human patients. Malaria Journal (Online), Internet. v. 2, n. 21, p. 21, 2003. Qualis: Não identificado (MALARIA JOURNAL , INTERNET)
11.	HASHIMOTO, R. F.; BARRERA, J.. A Greedy Algorithm for Decomposing Convex Structuring Elements. Journal of Mathematical Imaging and Vision, USA. v. 18, n. 3, p. 269-289, 2003. Qualis: A1 (JOURNAL OF MATHEMATICAL IMAGING AND VISION)
12.	HASHIMOTO, R. F.; DOUGHERTY, E. R. ; Marcel Brun ; Zheng-Zheng Zhou ; BITTNER, M. L. ; TRENT, J. M.. Efficient Selection of Feature Sets Possessing High Coefficients of Determination Based on Incremental Determinations. Signal Processing. v. 83, n. 4, p. 695-712, 2003. Qualis: A1
13.	Lima, D U ; Oliveira, R.C. ; BUCKERIDGE, M. S.. Seed storage hemicelluloses as wet-end additives in papermaking. Carbohydrate Polymers, Irlanda. v. 52, n. 4, p. 367-373, 2003. Qualis: Não identificado (CARBOHYDRATE POLYMERS, IRLANDA)
14.	MADEIRA, L. ; DEMARCO, R. ; GAZARINI, M. ; Verjovski-Almeida, S. ; GARCIA, C.. Human Malaria Parasites Display a Receptor for Activated C Kinase (RACK) Ortholog. Biochemical and Biophysical Research Communications (Print), USA. v. 306, p. 995-1001, 2003.Qualis: A3 (BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS)
15.	PAPINITERZI, F. S. ; GALHARDO, R. ; FARIAS, L. P. ; MENCK, C. F. M. ; SLUYS MAV.. Point Mutation is Responsible for Arabidopsis tz-201 Mutant Phenotype Affecting Thiamin Biosynthesis.. Plant and Cell Physiology, Japan. v. 44, n. 8, p. 865-860, 2003.Qualis: Não identificado (PLANT AND CELL PHYSIOLOGY, JAPAN)
16.	PAQUOLA, A. C. M. ; NISHYIAMA, M. Y. ; REIS, E. M. ; da SILVA, A. M. ; Verjovski-Almeida, S.. ESTWeb: bioinformatics services for EST sequencing projects. Bioinformatics (Oxford. Print). v. 19, p. 1587-1588, 2003. Qualis: Não identificado (PRINT))
17.	PAQUOLA, A. C.M. ; MACHADO, A. A. ; REIS, E. M. ; da SILVA, A. M. ; Verjovski-Almeida, S.. Zerg: a very fast BLAST parser library. Bioinformatics (Oxford. Print). v. 19, p. 1035-1036, 2003. Qualis: Não identificado (PRINT))
18.	PAQUOLA, Apua C. M. ; MACHADO, Abimael A ; REIS, EM ; SILVA, Aline M. da ; VERJOVSKI-ALMEIDA, Sergio. Zerg: a very fast BLAST parser library. Bioinformatics (Oxford), England. v. 19, n. 8, p. 1035-1036, 2003. Qualis: Não identificado (BIOINFORMATICS , ENGLAND)
19.	PIAZZA, J. P. ; Setubal, João C. New ways for automatic detection of contaminants in EST projects. Revista Tecnologia da Informação. v. 3, p. 36-41, 2003.Qualis: Não identificado (REVISTA TECNOLOGIA DA INFORMAÇÃO)
20.	RIBEIRO, F. P. ; FURLANETO, C. J. ; RIBEIRO, W. B. ; SOUZA, G. M. ; CASSATELA, M. ; CAMPA, A.. mRNA expression and release of interleukin-8 induced by serum amyloid A in neutrophils and monocytes. MEDIATORS OF INFLAMMATION. v. 12, p. 173-178, 2003. Qualis: A3
21.	ROSSI, M. ; ARAÚJO, P. G. ; PAULET, F. ; GARSMEUR, O. ; VM Dias ; CHEN, H. ; SLUYS MAV. ; DHONT, A.. Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane.. Molecular Genetics and Genomics. v. 269, n. 3, p. 406-419, 2003. Qualis: A4
22.	SAKABE, N. J. ; SOUZA, J. E. S. ; GALANTE, P. A. F. ; OLIVEIR, P. S. L. ; PASSETTI, Fábio ; SAMAIA, H. B. ; OSÓRIO, E. C. ; ZAIATS, A. C. ; LEERKES, M. R. ; KITAJIMA, J. P. ; BRENTANI, R. R. ; STRAUSBERG, R. L. ; SIMPSON, A. J. G. ; DE SOUZA, S. J.. Orestes are enriched in exon variants affecting the encoded proteins. Comptes Rendus. Biologies. v. 326, p. 979-985, 2003. Qualis: Não identificado (BIOLOGIES)
23.	BRENTANI, Helena ; CABALLERO, Otavia L. ; CAMARGO, Anamaria A. ; DASILVA, Aline M. ; SILVA, JR., Wilson Araujo da ; DIAS-NETO, Emmanuel ; GRIVET, Marco ; GRUBER, Arthur ; GUIMARAES, Pedro Edson Moreira ; ISELI, Christian ; JONGENEEL, Victor ; KELSO, Janet ; NAGAI, Maria Aparecida ; OJOPI, Elida P.b ; OSORIO, Elisson C. ; REIS, EM ; RIGGINS, Gregory J. ; SIMPSON, Andrew John George ; SOUZA, Sandro de ; STEVENSON, Brian J. ; et.al. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. PNAS. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, EUA. v. 100, n. 23, p. 13418-13423, 2003. Qualis: A1 (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA)
24.	SHMULEVICH, Ilya ; GLUHOVSKY, Ilya ; HASHIMOTO, R. F. ; DOUGHERTY, E. R. ; ZHANG, Wei. Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks. Comparative and Functional Genomics. v. 4, p. 601-608, 2003. Qualis: Não identificado (COMPARATIVE AND FUNCTIONAL GENOMICS)
25.	SLUYS MAV.; OLIVEIRA, Mariana Cabral de ; MONTEIROVITORELLO, C B ; MIYAKI, C. Y. ; FURLAN, L. R. ; CAMARGO, L E A ; SILVA, A. C. R. ; MOON, D. H. ; TAKITA, M. A. ; LEMOS, E. G. M. ; MACHADO, M. A. ; FERRO, M. I. T. ; SILVA, F R da ; GOLDMAN, M. H. S. ; GOLDMAN, G. H. ; LEMOS, M. V. F. ; DORRY, H. E. ; TSAI, S. M. ; CARRER, H. ; CARRARO, D. M. ; et.al. Comparative Analyses of the Complete Genome Sequences of Pierce's Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa. Journal of Bacteriology, EUA. v. 185, n. 3, p. 1018-1026, 2003. Qualis: A3 (JOURNAL OF BACTERIOLOGY)
26.	SOLER, J. M. P.; BLANGERO, J.. Longitudinal Familial Analysis of Blood Pressure Involving Parametric (Co)variance Functions. BMC Genetic. 2003.Qualis: A3 (BMC GENETICS)
27.	SUDA, C. N. K. ; BUCKERIDGE, M. S. ; Giorgini, J.. Cell wall hydrolases in the seeds of Euphorbia heterophylla L. during germination and early seedling development.. Revista Brasileira de Fisiologia Vegetal, Campinas. v. 15, n. 3, p. 135-143, 2003. Qualis: Não identificado (REVISTA BRASILEIRA DE FISIOLOGIA VEGETAL, CAMPINAS)
28.	TINÉ, M. A. S. ; Lima, D U ; BUCKERIDGE, M. S.. Galactose branching modulates the action of cellulase on seed storage xyloglucans. Carbohydrate Polymers, Irlanda. v. 52, p. 135-141, 2003. Qualis: Não identificado (CARBOHYDRATE POLYMERS, IRLANDA)
29.	VERJOVSKI-ALMEIDA, Sergio ; DEMARCO, Ricardo ; MARTINS, Elizabeth A.l. ; GUIMARÃES, Pedro E.m ; OJOPI, Elida P.b ; PAQUOLA, Apua C. M. ; PIAZZA, João Paulo ; NISHYIAMA JR., Milton Yutaka ; KITAJIMA, João Paulo ; ADAMSON, Rachel E. ; ASHTON, Peter D ; BONALDO, Maria F ; COULSON, Patricia S ; DILLON, Gary P ; FARIAS, Leonardo P ; GREGORIO, Sheila P ; HO, Paulo L ; LEITE, Ricardo A ; MAQUIAS, Cosme C ; REIS, EM ; et.al. Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nature Genetics, Grã-Bretanha. v. 35, n. 2, p. 148-157, 2003. Qualis: Não identificado (NATURE GENETICS, GRÃ-BRETANHA)
30.	VETTORE, A. ; da SILVA, F. R. ; KEMPER, E. ; SOUZA, G. M. ; da SILVA, A. M. ; FERRO, M. I. ; HENRIQUE-SILVA, F. ; GIGLIOTI, E. A. ; LEMOS, M. V. ; COUTINHO, L. L. ; NOBREGA, M. P. ; CARRER, H. ; FRANCA, S. C. ; BASSI JUNIOR, M. ; GOLDMAN, M. H. ; GOMES, S. L. ; NUNES, L. R. ; CAMARGO, L. E. A. ; SIQUEIRA, W. J. ; VAN SLUYS, MARIE-ANNE ; et.al. Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane.. Genome Research, United States. v. 13, n. 12, p. 2725-2735, 2003. Qualis: Não identificado (GENOME RESEARCH, UNITED STATES)
31.	VÊNCIO, R. Z. N. ; SAMAIA, H. B. ; PEREIRA, C. A. B.. Using credibility intervals instead of hypothesis tests in SAGE analysis. BMC Bioinformatics. v. 19, p. 2461-2464, 2003. Qualis: A1

2002

1.	AIDAR, M. P. M. ; COSTA, P. F. ; MARTINEZ, C. A. ; DIETRICH, S. M. C. ; BUCKERIDGE, M. S.. Effect of atmospheric CO2 enrichment on the establishment of seedlings of jatobá, Hymenaea courbaril L. (Leguminosae, Caesalpinioideae). Biota Neotropica, Campinas. v. 2, n. 1, 2002.Qualis: Não identificado (BIOTA NEOTROPICA, CAMPINAS)
2.	BUCKERIDGE, M. S.; AIDAR, M. P. M.. Carbon sequestration in the rain forest: alternatives using environmentally friendly biotechnology. Biota Neotropica, Campinas. v. 2, n. 2, 2002.Qualis: Não identificado (BIOTA NEOTROPICA, CAMPINAS)
3.	CAVALCANTE, A. ; MASCIO, P. ; MENCK CF ; L.F. Agnez-Lima. Cytotoxicity and mutagenesis induced by singlet oxygen in wild type and DNA repair deficient Escherichia coli strains.. DNA Repair, Netherlands. v. 1, n. 12, p. 1051-1056, 2002. Qualis: Não identificado (DNA REPAIR, NETHERLANDS)
4.	CHIGANCAS, V. ; BATISTA, L. F. Z. ; BRUMATTI, G. P. ; AMARANTES-MENDES, G. ; YASUI, A. ; MENCK CF. Photorepair of RNA polymerase arrest and apoptosis after ultraviolet irradiation in normal and xpb deficient rodent cells.. Cell Death and Differentiation, England. v. 9, n. 10, p. 1099-1107, 2002.Qualis: Não identificado (CELL DEATH AND DIFFERENTIATION, ENGLAND)
5.	da Silva Neto, J ; KOIDE, T.. Site-directed gene disruption in Xylella fastidiosa. FEMS Microbiology Letters. v. 210, n. 1, p. 105-110, 2002. Qualis: B2
6.	da Silva, A. C. R. ; Ferro, J. A. ; Reinach, F. C. ; Farah, C. S. ; Furlan, L. R. ; Quaggio, R. B. ; Monteiro-Vitorello, C. B. ; Sluys, M. A. Van ; Almeida, N. F. ; Alves, L. M. C. ; do Amaral, A. M. ; Bertolini, M. C. ; Camargo, L. E. A. ; Camarotte, G. ; Cannavan, F. ; Cardozo, J. ; Chambergo, F. ; Ciapina, L. P. ; Cicarelli, R. M. B. ; de SOUZA, Robson Francisco ; et.al. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities.. Nature (London), Estados Unidos. v. 417, n. 6887, p. 459-463, 2002. Qualis: Não identificado (NATURE , ESTADOS UNIDOS)
7.	Da SILVA, F. L. B.; BOGREN, D. ; SÖDERMAN, O. ; ÅKESSON, Torbjörn ; JÖNSSON, Bo. Titration of fatty acids solubilized in cationic, nonionic and anionic micelles. Theory and experiment.. Journal of Physical Chemistry B. v. 106, n. 13, p. 3515-3522, 2002. Qualis: A2
8.	FIETTO, J. L. R. ; DEMARCO, Ricardo ; Verjovski-Almeida, S.. Use of degenerate primers and touchdown PCR for construction of cDNA Libraries.. BioTechniques. v. 32, n. 6, p. 1404-1411, 2002.Qualis: A4
9.	FURLANETO, C. J. ; RIBEIRO, F. P. ; TANAKA, E. ; SOUZA, G. M. ; CASSATELA, M. ; CAMPA, A.. Apolipoproteins A-I and A-II downregulate neutrophil functions. LIPIDS. v. 37, p. 925-928, 2002. Qualis: B1
10.	HASHIMOTO, R. F.; BARRERA, J.. A Note on Park and Chin´s Algorithm. IEEE Transactions on Pattern Analysis and Machine Intelligence. v. 24, n. 1, p. 139-144, 2002. Qualis: Não identificado (IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE)
11.	HIRATA JR., R. ; BARRERA, J. ; HASHIMOTO, R. F. ; DANTAS, D. O. ; ESTEVES, G. H.. Segmentation of Microarray Images by Mathematical Morphology. Real-Time Imaging, USA. v. 8, n. 6, p. 491-505, 2002. Qualis: Não identificado (REAL-TIME IMAGING, USA)
12.	ISELI, C. ; DE SOUZA, S. J. ; SAMAIA, H. B. ; STEVENSON, B. J. ; CAMARGO, A. A. ; STRAUSBERG, R. L. ; BUETOW, K. H. ; SIMPSON, A. J. G. ; JONGENEEL, C. V.. Long-range heterogeneity at the 3´ end of human mRNAs. Genome Research. v. 12, p. 1068-1074, 2002. Qualis: A1
13.	JORGE, S. A. C. ; MENCK CF ; SIES, H. ; OSBORNE, M. R. ; PHILLIPS, D. H. ; SARASIN, A. ; STARY, A.. Mutagenic fingerprint of ozone in human cells.. DNA Repair, Netherlands. v. 1, n. 5, p. 369-378, 2002. Qualis: Não identificado (DNA REPAIR, NETHERLANDS)
14.	MAGALHAES, G. ; MUOTRI, A. R. ; MARCHETTO, M. ; MENCK CF ; VENTURA, A.. An adenovirus vector containing the suicide gene thymidine kinase for a broad application in cancer gene therapy.. Memórias do Instituto Oswaldo Cruz, Brazil. v. 97, n. 4, p. 547-552, 2002.Qualis: Não identificado (MEMÓRIAS DO INSTITUTO OSWALDO CRUZ, BRAZIL)
15.	MEIDANIS, J. ; BRAGA, M. ; Verjovski-Almeida, S.. Whole Genome Analysis of Transporters in the plant pathogen Xylella fastidiosa. Microbiology and Molecular Biology Reviews. v. 66, n. 6, p. 272-299, 2002.Qualis: Não identificado (MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS)
16.	MENCK CF. Shining light on photolyases. Nature Genetics, United States. v. 32, p. 338-339, 2002. Qualis: Não identificado (NATURE GENETICS, UNITED STATES)
17.	MUOTRI, A. R. ; MARCHETTO, M. ; SUZUKI, M. F. ; OKAZAKI, K. ; LOTFI, C. F. P. ; BRUMATTI, G. P. ; AMARANTES-MENDES, G. ; MENCK CF. Low amounts of the DNA repair XPA protein are sufficient to recover UV-resistance.. Carcinogenesis (New York), England. v. 23, n. 6, p. 1039-1046, 2002.Qualis: Não identificado (CARCINOGENESIS , ENGLAND)
18.	MUOTRI, A. R. ; MARCHETTO, M. ; ZERBINI, L. ; LIBERMANN, T. ; VENTURA, A. ; SARASIN, A. ; MENCK CF. Complementation of the DNA repair deficiency in human xeroderma pigmentosum group A and C cells by recombinant adenovirus-mediated gene transfer.. Human Gene Therapy, United States. v. 13, n. 15, p. 1833-1844, 2002.Qualis: Não identificado (HUMAN GENE THERAPY, UNITED STATES)
19.	MUOTRI, A. R. ; MARCHETTO, M. C. ; SUZUKI, M. F. ; OKAZAKI, K. ; LOTFI, C. F. ; BRUMATTI, G. ; AMARANTEMENDES, G. P. ; MENCK CF. Low amounts of the DNA repair XPA progein are sufficient to recover UV-resistance. Carcinogenesis (New York. Print). v. 23, p. 1039-1046, 2002.Qualis: Não identificado (PRINT))
20.	POTOMATI, A. ; BUCKERIDGE, M. S.. Effect of abscisic acid on the mobilisation of galactomannan and embryo development of Sesbania virgata (Cav.) Pers. (Leguminosae - Faboideae). Brazilian Journal of Botany, São Paulo. v. 25, n. 3, p. 303-310, 2002. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)
21.	SETUBAL, J. C.; SILVA, Ana Claudia Rasera da ; SIMPSON, A. J. G. ; KITAJIMA, Joao Paulo ; FERRO, Jesus ; SLUYS, Marie Anne Van ; MONTEIRO-VITORELLO, Claudia B. ; CAMARGO, Luis Eduardo Aranha ; MENCK, Carlos F. M. ; OLIVEIRA, Mariana Cabral de. C OMPARATIVE G ENOMIC A NALYSIS OF P LANT -A SSOCIATED B ACTERIA. Annual Review of Phytopathology (Print), EUA. v. 40, p. 169-189, 2002. Qualis: A1 (ANNUAL REVIEW OF PHYTOPATHOLOGY)
22.	SLUYS MAV.; VITORELLO, C. B. M. ; CAMARGO, L E A ; MENCK, Carlos Frederico Martins ; SILVA, A. C. R. ; FERRO, J. A. ; OLIVEIRA, Mariana Cabral de ; SETUBAL, J. C. ; KITAJIMA, J. P. ; SIMPSON, A. J.. Comparative genomic analysis of plant-associated bacteria.. Annual Review of Phytopathology (Print), Estados Unidos. v. 40, p. 169-189, 2002. Qualis: Não identificado (ANNUAL REVIEW OF PHYTOPATHOLOGY , ESTADOS UNIDOS)
23.	STANCATO, G. C. ; MAZZAFERA, P. ; BUCKERIDGE, M. S.. Effects of light stress on the growth of the epiphytic orchid Cattleya forbesii Lindl. X Laelia tenebrosa Rolfe. Brazilian Journal of Botany, São Paulo. v. 25, n. 2, p. 229-235, 2002. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)
24.	TAMINATO, A. ; BAGATTINI, R. ; GORJAO, R. ; CHEN, G. ; KUSPA, A. ; SOUZA, GM. A role for YakA, cAMP and PKA in the regulation of stress responses of Dictyostelium discoideum cells. Molecular Biology of the Cell. v. 13, p. 2266-2275, 2002.Qualis: A2

2001

1.	ARAÚJO, P. G. ; CASACUCERTA, J. M. ; COSTA, A. P. P. ; HASHIMOTO, R. Y. ; GRANDBASTIEN, M. A. ; SLUYS MAV.. Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus. Molecular and General Genetics. v. 266, n. 1, p. 35-41, 2001. Qualis: Não identificado (MOLECULAR AND GENERAL GENETICS)
2.	BARRERA, J. ; HASHIMOTO, R. F.. Sup-Compact and Inf-Compact Representations of W-Operators. Fundamenta Informaticae. v. 45, n. 4, p. 283-294, 2001.Qualis: A2
3.	BUCKERIDGE, M. S.; Vergara C. ; Carpita NC. Insight into multi-site mechanisms of glycosyl transfer in (1,4)-beta-D-glycans provided by the cereal mixed-linkage (1,3),(1,4)-beta-D-glucan synthase. Phytochemistry. v. 57, p. 1045-1053, 2001. Qualis: A2
4.	CAMARGO, Anamaria A. ; SAMAIA, Helena Brentani ; DIAS-NETO, Emmanuel ; SIMÃO, Daniel F. ; MIGOTTO, Italo A. ; BRIONES, Marcelo R. S. ; COSTA, Fernando F. ; NAGAI, Maria Aparecida ; VERJOVSKI-ALMEIDA, Sergio ; ZAGO, Marco A. ; ANDRADE, Luis Eduardo C. ; CARRER, Helaine ; EL-DORRY, Hamza ; ESPREAFICO, Enilza M. ; HABR-GAMA, Angelita ; GIANNELLA-NETO, Daniel ; GOLDMAN, Gustavo H. ; GRUBER, Arthur ; HACKEL, Christine ; REIS, EM ; et.al. The contribution of 700,000 ?ORF sequence tags? to the definition of the human transcriptome.. PNAS. Proceedings of the National Academy of Sciences of the United States of America, USA. v. 98, n. 21, p. 12103-12108, 2001. Qualis: A1 (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA)
5.	CAMARGO, A. A. ; NUNES, D. N. ; SAMAIA, H. B. ; LIU, L. ; COLLINS, V. P. ; SIMPSON, A. J. G. ; DIAS NETO, E.. Molecular characterization of DDX26, a human DEAD-box RNA helicase, located on chromosome 7p12. Brazilian Journal of Medical and Biological Research. v. 34, p. 1237-1245, 2001. Qualis: A4
6.	Carvalho P.G.B. ; Borgetti, F. ; BUCKERIDGE, M. S. ; Morhy, L. ; Fereira Filho, E.X.. Temperature-dependent germination and endo-beta-mannanase activity in sesame seeds. Revista Brasileira de Fisiologia Vegetal, Viçosa. v. 13, n. 2, p. 139-148, 2001. Qualis: Não identificado (REVISTA BRASILEIRA DE FISIOLOGIA VEGETAL, VIÇOSA)
7.	CHABREGAS, S. M. ; LUCHE, D. D. ; FARIAS, L. P. ; RIBEIRO, A. F. ; SLUYS MAV. ; MENCK, C. F. M. ; SILVA-FILHO, M. C.. Dual targetting properties of the N-terminal signal sequence of Arabidopsis thaliana THI1 protein to mitochondria and chloroplast. Plant Molecular Biology. v. 46, p. 639-650, 2001. Qualis: A1
8.	COSTA, R. M. A. ; MORGANTE, P. G. ; BERRA, C. M. ; NAKABASHI, M. ; BRUNEAU, D. ; BOUCHEZ, D. ; SWEDER, K. ; M.A. VanSluys ; MENCK CF. The participation of AtXPB1, the XPB/RAD25 homologue gene from Arabidopsis thaliana, in DNA repair and plant development.. Plant J, Inglaterra. v. 28, n. 4, p. 385-395, 2001. Qualis: Não identificado (PLANT J, INGLATERRA)
9.	COSTA, R. M. A. ; LIMA, W. C. ; VOGEL, C. I. G. ; BERRA, C. M. ; LUCHE, D. D. ; MEDINA-SILVA, R. ; GALHARDO, R. ; MENCK CF ; OLIVEIRA, V. S.. DNA repair-related genes in sugarcane expressed sequence tags (ESTs).. Genetics and Molecular Biology, Ribeirão Preto. v. 24, n. 1-4, p. 131-140, 2001.Qualis: Não identificado (GENETICS AND MOLECULAR BIOLOGY, RIBEIRÃO PRETO)
10.	Da SILVA, F. L. B.; JÖNSSON, Bo ; PENFOLD, R.. A critical investigation of the Tanford-Kirkwood model by means of Monte Carlo simulations. Protein Science, Estados Unidos. v. 10, p. 1415-1425, 2001. Qualis: Não identificado (PROTEIN SCIENCE, ESTADOS UNIDOS)
11.	Da SILVA, F. L. B.; OLIVARES, Wilmer ; DEGREVE, L. ; ÅKESSON, Torbjörn. Application of a New Reverse Monte Carlo Algorithm to PolyatomicMolecular Systems I. Liquid water. Journal of Chemical Physics, Estados Unidos. v. 114, n. 2, p. 907-914, 2001. Qualis: Não identificado (JOURNAL OF CHEMICAL PHYSICS, ESTADOS UNIDOS)
12.	DOBO, B. A. ; CLARK, A. G. ; VIBRANOVSKI, M. D.. Identification of five new genes on the Y chromosome of Drosophila melanogaster. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Estados Unidos. v. 98, n. 23, p. 13225-13230, 2001. Qualis: A1 (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA)
13.	DURAN, N. ; MENCK CF. Chomobacterium violaceum: a review on pharmacological and industrial perspectives.. Critical Reviews in Microbiology, Estados Unidos. v. 27, n. 3, p. 201-222, 2001.Qualis: Não identificado (CRITICAL REVIEWS IN MICROBIOLOGY, ESTADOS UNIDOS)
14.	FROHME, M. ; CAMARGO, A. ; CZINK, C. ; MATSUKUMA, A. ; SIMPSON, A. ; HOHEISEL, J. ; Verjovski-Almeida, S.. Directed gap closure in large scale sequencing projects. Genome Research, USA. v. 11, p. 901-903, 2001.Qualis: Não identificado (GENOME RESEARCH, USA)
15.	HASHIMOTO, R. F.; BARRERA, J.. From the Sup-Decomposition to Sequential Decompositions. Journal of Mathematical Imaging and Vision. v. 15, n. 3, p. 197-216, 2001. Qualis: A1
16.	L.F. Agnez-Lima ; P. DiMascio ; DEMPLE, B. ; MENCK CF. Singlet molecular oxygen triggers the soxRS regulon of Escherichia coli.. Biological Chemistry, Berlin, Alemanha. v. 382, p. 1071-1075, 2001.Qualis: Não identificado (BIOLOGICAL CHEMISTRY, BERLIN, ALEMANHA)
17.	L.F. Agnez-Lima ; R.L. Napolitano ; R.P. Fuchs ; P. DiMascio ; MUOTRI, A. R. ; MENCK CF. DNA repair and sequence context affect 1O2-induced mutagenesis in bacteria. Nucleic Acids Research, USA. v. 29, p. 2899-2903, 2001.Qualis: Não identificado (NUCLEIC ACIDS RESEARCH, USA)
18.	Lima, D U ; BUCKERIDGE, M. S.. Interaction between cellulose and storage xyloglucans: the influence of degree of galactosylation. Carbohydrate Polymers, Inglaterra. v. 46, n. 2, p. 157-163, 2001. Qualis: Não identificado (CARBOHYDRATE POLYMERS, INGLATERRA)
19.	Lima, D U ; Santos HP ; TINÉ, M. A. S. ; MOLLE, F. D. ; BUCKERIDGE, M. S.. Patterns of expression of cell wall related genes in sugar cane. GENETICS AND MOLECULAR BIOLOGY, Campinas. v. 24, n. 1, p. 191-198, 2001. Qualis: Não identificado (GENETICS AND MOLECULAR BIOLOGY, CAMPINAS)
20.	LIMA, W. C. ; MEDINA-SILVA, R. ; GALHARDO, R. ; MENCK CF. Distribution of DNA repair-related ESTs in sugarcane.. Genetics and Molecular Biology, EUA. v. 24, n. 1-4, p. 141-146, 2001.Qualis: A4 (GENETICS AND MOLECULAR BIOLOGY)
21.	MARCHETTO, M. ; MUOTRI, A. R. ; MAGALHAES, G. ; ZERBINI, L. ; LIBERMANN, T. ; VENTURA, A. ; MENCK CF. The EGFP recombinant adenovirus: an example of efficient gene delivery and expression in human cells.. Virus Reviews and Research, São Paulo. v. 6, p. 23-33, 2001.Qualis: Não identificado (VIRUS REVIEWS AND RESEARCH, SÃO PAULO)
22.	Marques, M ; DA SILVA, A. M. ; GOMES, Suely Lopes. Genetic Organization of Plasmid pXF51 from the Plant Pathogen Xylella fastidiosa. Plasmid (San Diego. Print). v. 45, n. 3, p. 184-199, 2001. Qualis: Não identificado (PRINT))
23.	MORGANTE, P. G. ; PERES, L. E. P. ; VECHI, C. ; KRAUS, J. ; SLUYS MAV.. Shoot regeneration capacity from roots and transgenic hairy roots of different tomato cultivars and wild related species.. Plant Cell, Tissue and Organ Culture. v. 65, p. 37-44, 2001.Qualis: A1
24.	PANEGASSI, V. R. ; SERRA, G. E. ; BUCKERIDGE, M. S.. Potencial tecnológico do galactomanano de sementes de faveiro (Dimorphandra mollis) para uso na indústria de alimentos. Revista Brasileira de Ciência e Tecnologia de Alimentos. Ciência e Tecnologia de Alimentos, Campinas. v. 20, n. 3, p. 406-415, 2001. Qualis: Não identificado (CIÊNCIA E TECNOLOGIA DE ALIMENTOS, CAMPINAS)
25.	PEREIRA, A. C. ; CUOCO, M. A. R. ; MOTA, G. F. ; SILVA, F. F. ; FREITAS, H. F. G. ; BOCCHI, E. A. ; SOLER, J. M. P. ; MANSUR, A. ; KRIEGER, J. E.. Hemochromatosis gene Cys282Ty mutation is associated with Ischemic, but not Non-Ischemic Heart Failure. The American Journal of Cardiology. v. 88, n. 4, p. 388-391, 2001.Qualis: A2
26.	RODRIGUES, L. ; LUZ, J. G. C. ; SOLER, J. M. P.. Ocorrência da mineralização do complexo do ligamento estilo-hioideo em acientes com disfunção da ATM e em indivíduos assintomáticos. Brazilian Oral Research. 2001.Qualis: A2
27.	ROSSI, M. ; ARAÚJO, P. G. ; SLUYS MAV.. Survey of transposable elements in sugarcane expressed sequence tags (ESTs). Genetics and Molecular Biology, Estados Unidos. v. 24, p. 147-154, 2001.Qualis: Não identificado (GENETICS AND MOLECULAR BIOLOGY, ESTADOS UNIDOS)
28.	S Chabregas ; LUCHE, D. D. ; LP Farias ; RIBEIRO, A. F. ; M.A. VanSluys ; MENCK CF ; MC Sliva-Filho. Dual targeting properties of the N-terminal sequence of Arabidopsis thaliana THI1 protein to mitochondria and chloroplasts. Plant Molecular Biology, USA. v. 46, p. 639-650, 2001. Qualis: A1 (PLANT MOLECULAR BIOLOGY)
29.	SALTINO, A. ; SALATINO, M. L. F. ; MELLOSILVA, R. ; SLUYS MAV. ; GIANNASI, D ; PRICE, R.A. Phylogenetic inference in Velloziaceae using chloroplast trnL-F sequences.. Systematic Botany. v. 26, p. 92-103, 2001.Qualis: A3
30.	SOUZA, Glaucia Mendes ; SIMÕES, Ana Carolina Quirino ; OLIVEIRA, Katia C. ; GARAY, H. M. ; FIORINI, Leonardo Costa ; GOMES, F. S. ; NISHIYAMA-JUNIOR, M. Y. ; DA SILVA, A. M.. The sugarcane signal transduction (SUCAST) catalogue: prospecting signal transduction in sugarcane. GENETICS AND MOLECULAR BIOLOGY. v. 24, n. 1-4, p. 25-34, 2001. Qualis: A4
31.	STANCATTO, J. ; MAZZAFERA, P. ; BUCKERIDGE, M. S.. Effect of a drought period on the mobilisation of non structural carbohydrates and water status in the epiphytic orchid Cattleya forbesii Lindl. X Laelia tenebrosa Rolfe.. Plant Physiology and Biochemistry (Paris), França. v. 39, n. 11, p. 1009-1016, 2001. Qualis: Não identificado (PLANT PHYSIOLOGY AND BIOCHEMISTRY , FRANÇA)
32.	WERNECK, R. ; SETUBAL, J. C.. Finding minimum congestion spanning trees. ACM Journal of Experimental Algorithmics. v. 6, p. 1-20, 2001.Qualis: Não identificado (ACM JOURNAL OF EXPERIMENTAL ALGORITHMICS)
33.	Wood, D. W. ; Setubal, J.C.. The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58. Science, USA. v. 294, p. 2317-2323, 2001. Qualis: Não identificado (SCIENCE, USA)