Artigos completos publicados em periódicos

Legenda Qualis:

• Publicação para a qual o nome exato do Qualis foi identificado: Qualis <estrato>
• Publicação para a qual um nome similar (não exato) do Qualis foi identificado: Qualis <estrato> (nome similar)
• Publicação para a qual nenhum nome do Qualis foi identificado: Qualis não identificado (nome usado na busca)

2012

14.	Chen S. ; Ni X. ; KRINSKY, B.H. ; ZHANG, Y. ; VIBRANOVSKI, M. D. ; White K.P. ; LONG, M.. Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO Journal (Print). v. 31, p. 2798-2809, 2012. Qualis: A1
15.	Damásio, André R.L. ; Ribeiro, Liliane F.C. ; Ribeiro, Lucas F. ; Furtado, Gilvan P. ; Segato, Fernando ; Almeida, Fausto B.R. ; Crivellari, Augusto C. ; BUCKERIDGE, M. S. ; Souza, Tatiana A.C.B. ; Murakami, Mário T. ; Ward, Richard J. ; Prade, Rolf A. ; Polizeli, Maria L.T.M.. Functional characterization and oligomerization of a recombinant xyloglucan-specific endo-ß-1,4-glucanase (GH12) from Aspergillus niveus. Biochimica et Biophysica Acta. Proteins and Proteomics. v. 1824, p. 461-467, 2012. Qualis: Não identificado (PROTEINS AND PROTEOMICS)
16.	de Mendonça, Patrícia Calligioni ; Bertoni, Bianca Waléria ; Amui, Saulo França ; Giuliatti, Silvana ; Corrêa, Valéria Sieiro Conde ; França, Suzelei de Castro ; Pereira, Ana Maria Soares. Genetic diversity of Stryphnodendron adstringens (Mart.) Coville determined by AFLP molecular markers. Biochemical Systematics and Ecology. v. 41, p. 16-20, 2012. Qualis: B1
17.	de SOUZA, Robson Francisco; Aravind, L.. Identification of novel components of NAD-utilizing metabolic pathways and prediction of their biochemical functions. Molecular Biosystems (Print). v. 8, p. 1661, 2012. Qualis: A3
18.	Dias, Zanoni ; Dias, Ulisses ; Setubal, Joao C. SIS: a program to generate draft genome sequence scaffolds for prokaryotes. BMC Bioinformatics. v. 13, p. 96, 2012. Qualis: A1
19.	do Nascimento, N. C. ; GUIMARAES, A. M. S. ; Santos, A. P. ; SanMiguel, P. J. ; MESSICK, J. B.. Complete Genome Sequence of Mycoplasma haemocanis Strain Illinois. Journal of Bacteriology (Print). v. 194, p. 1605-1606, 2012. Qualis: A3
20.	do Nascimento, Naila C ; Santos, Andrea P ; Guimaraes, Ana MS ; SanMiguel, Phillip J ; Messick, Joanne B. Mycoplasma haemocanis -- the canine hemoplasma and its feline counterpart in the genomic era. Veterinary Research. v. 43, p. 66, 2012. Qualis: A1
21.	Domingues, Douglas S ; Cruz, Guilherme MQ ; Metcalfe, Cushla J ; Nogueira, Fabio TS ; Vicentini, Renato ; de S Alves, Cristiane ; Van Sluys, Marie-Anne. Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns. BMC GENOMICS. v. 13, p. 137, 2012. Qualis: A2
22.	Dos Santos, Patricia C ; Fang, Zhong ; Mason, Steven W ; Setubal, João C ; Dixon, Ray. Distribution of nitrogen fixation and nitrogenase-like sequences amongst microbial genomes. BMC Genomics. v. 13, p. 162, 2012. Qualis: A2
23.	dos Santos, W.D ; LOPES, A. F. ; BARONI, A. M. ; ALCÂNTARA, P. H. N. ; BUCKERIDGE, M. S.. Penicilium citrinum polysaccharidases. Journal of Agronomical Sciences. v. 1, p. 139-152, 2012.Qualis: C (JOURNAL OF AGRONOMIC SCIENCES)
24.	DRIEMEIER, C. ; Driemeier, Carlos ; Santos, Wanderley D. ; BUCKERIDGE, M. S.. Cellulose crystals in fibrovascular bundles of sugarcane culms: orientation, size, distortion, and variability. Cellulose (London). v. 19, p. 1-1508, 2012. Qualis: A1
25.	FERREIRA, J. E.; ARAUJO, L. V. ; BRAGHETTO, K. R. ; ITALIANO, I. C. ; OIKAWA, M. K. ; Takecian, P. L.. Long Lived Transaction Processing for Business Processes and Scientific Workflows. Journal of Information and Data Management - JIDM. v. 3, p. 33-50, 2012.Qualis: B3
26.	Fettweis, J.M. ; SERRANO, M. G. ; Nihar Sheth ; Carly Mayer ; Abigail L. Glascock ; Brooks, J.P. ; Jefferson, Kimberly K ; Alves, João M. P. ; Vaginal Microbiome Consortium ; BUCK, G. A.. Species-level classification of the vaginal microbiome. BMC Genomics. v. 13, p. S17, 2012.Qualis: A2
27.	GARCIA, M. O. ; BRAGHETTO, K. R. ; PU, C. ; FERREIRA, J. E.. An Implementation of a Transaction Model for Business Process Systems. Journal of Information and Data Management - JIDM. v. 3, p. 271, 2012.Qualis: B3
28.	GOMEZ-VALDES, J. ; HÜNEMEIER, T. ; Contini V ; ACUNA-ALONZO, V. ; MACIN, G. ; Ballesteros, M ; CORRAL-MONTANES, P. ; RUIZ-LINARES, A ; SANCHEZ-MEJORADA, G. ; CANIZALES-QUINTEROS, S. ; MARTINEZ-ABADIAS, N. ; SALZANO, F. M. ; GONZALEZ-JOSE, R. ; BORTOLINI, M. C.. Fibroblast growth factor receptor 1 ( FGFR1 ) variants and craniofacial variation in Amerindians and related populations. American Journal of Human Biology. v. 1, p. n/a-n/a, 2012. Qualis: A1
29.	Goncalez, Thelma T. ; Sabino, Ester C. ; Capuani, Ligia ; Liu, Jing ; Wright, David J. ; Walsh, Judy H. ; FERREIRA, JOAO E. ; Chamone, Dalton A. ; Busch, Michael P. ; Custer, Brian. Blood transfusion utilization and recipient survival at Hospital das Clinicas in São Paulo, Brazil. Transfusion (Arlington, Va.). v. 52, p. 729-738, 2012. Qualis: A3
30.	GUIMARAES, A. M. S.; Toth, B. ; Santos, A. P. ; do Nascimento, N. C. ; KRITCHEVSKY, J. E. ; MESSICK, J. B.. Genome Sequence of 'Candidatus Mycoplasma haemolamae' Strain Purdue, a Red Blood Cell Pathogen of Alpacas (Vicugna pacos) and Llamas (Lama glama). Journal of Bacteriology (Print). v. 194, p. 6312-6313, 2012. Qualis: A3
31.	Harwich, Michael D ; Serrano, Myrna G. ; Fettweis, J.M. ; Alves, João M. P. ; Mark A. Reimers ; Vaginal Microbiome Consortium ; Buck, Gregory A ; Jefferson, Kimberly K. Genomic sequence analysis and characterization of Sneathia amnii sp. nov. BMC Genomics. v. 13, p. S4, 2012. Qualis: A2
32.	HORIMOTO, ANDRÉA RVR ; OLIVEIRA, CAMILA M ; GIOLO, SUELY R ; SOLER, JÚLIA P ; DE ANDRADE, MARIZA ; KRIEGER, JOSÉ E ; PEREIRA, ALEXANDRE C. Genetic analyses of smoking initiation, persistence, quantity, and age-at-onset of regular cigarette use in Brazilian families: the Baependi Heart Study. BMC Medical Genetics (Online). v. 13, p. 9, 2012. Qualis: A4
33.	HÜNEMEIER, T.; Amorim, CEG ; AZEVEDO, S. ; Contini V ; Rothhammer F ; Dugoujon JM ; Mazières S ; BARRANTES, R. ; Villarreal-Molina MT ; PAIXAO-CORTES, V. R. ; SALZANO, F. M. ; CANIZALES-QUINTEROS, S. ; RUIZ-LINARES, A ; BORTOLINI, M. C.. Evolutionary Responses to a Constructed Niche: Ancient Mesoamericans as a Model of Gene-Culture Coevolution. Plos One. v. 7, p. e38862-e38862, 2012. Qualis: A1
34.	HÜNEMEIER, T.; GOMEZ-VALDES, J. ; Ballesteros, M ; AZEVEDO, S. ; MARTINEZ-ABADIAS, N. ; Esparza, M ; SJOVOLD, T. ; BONATTO, S. L. ; SALZANO, F. M. ; BORTOLINI, M. C. ; GONZALEZ-JOSE, R.. Cultural diversification promotes rapid phenotypic evolution in Xavante Indians. Proceedings of the National Academy of Sciences of the United States of America. v. 109, p. 73-77, 2012. Qualis: A1
35.	Jesus, Erika M. ; Ochoa Cruz, Edgar A. ; Cruz, Guilherme M. Q. ; Van Sluys, Marie-Anne. Diversification of hAT transposase paralogues in the sugarcane genome. MOLECULAR GENETICS AND GENOMICS. v. 287, p. 205-219, 2012. Qualis: A4
36.	JOLY, C. A. ; BERLINCK, R. G. S. ; BOLZANI, V. S. ; HADDAD, C. F. B. ; OLIVEIRA, M. C. ; SLUYS MAV. ; SOUZA, G. M. ; VERDADE, L. M. ; VICTORIA, R. L.. Principais conclusões do workshop conjunto dos programas FAPESP BIOTA-BIOEN-Mudanças Climáticas: ciência e políticas públicas para uma economia mais verde, no contexto da RIO+20. Biota Neotropica. v. 12(2), p. 19-21, 2012.Qualis: B1
37.	Jones, Crystal L. ; Sampson, Timothy R. ; Nakaya, Helder I. ; Pulendran, Bali ; Weiss, David S.. Repression of Bacterial Lipoprotein Production by F. novicida Facilitates Evasion of Innate Immune Recognition. Cellular Microbiology (Print). v. 15, p. n/a-n/a, 2012. Qualis: A2
38.	KAJIHARA, D. ; Godoy F ; Hamaji TA ; BLANCO, S. R. ; VANSLUYS, M A ; SLUYS MAV. ; ROSSI, M.. Functional characterization of sugarcane mustang domesticated transposases and comparative diversity in sugarcane, rice, maize and sorghum. Genetics and Molecular Biology (Impresso). v. 35, p. 632-639, 2012.Qualis: A4
39.	Krepischi, Ana C V ; Achatz, Maria Isabel W ; Santos, Erika M M ; Costa, Silvia S ; Lisboa, Bianca C G ; Brentani, Helena ; Santos, Tiago M ; Goncalves, Amanda ; Nobrega, Amanda F ; Pearson, Peter L ; Vianna-Morgante, Angela M ; Carraro, Dirce M ; Brentani, Ricardo R ; Rosenberg, Carla. Germline DNA copy number variation in familial and early-onset breast cancer. Breast Cancer Research (Print). v. 14, p. R24, 2012. Qualis: A1
40.	Kwissa, M. ; NAKAYA, H. I. ; Oluoch, H. ; Pulendran, B.. Distinct TLR adjuvants differentially stimulate systemic and local innate immune responses in non-human primates. Blood (Philadelphia, PA). v. 119, p. n/a, 2012. Qualis: A1
41.	LIMA, L. A. ; RIS, M. ; BARRERA, J. ; BRENTANI, M. M. ; Brentani, Helena. Computing a predictor set influence zone through a multi-laser genetic network to explore the role of estrogen in breast cance. Advances in Breast Cancer Research. v. 1, p. 29-29, 2012.Qualis: Não identificado (ADVANCES IN BREAST CANCER RESEARCH)
42.	Lima, Luciana ; Ortiz, Paola A. ; da Silva, Flávia Maia ; Alves, João Marcelo P. ; Serrano, Myrna G. ; Cortez, Alane P. ; Alfieri, Silvia C. ; Buck, Gregory A. ; Teixeira, Marta M. G.. Repertoire, Genealogy and Genomic Organization of Cruzipain and Homologous Genes in Trypanosoma cruzi, T. cruzi-Like and Other Trypanosome Species. Plos One. v. 7, p. e38385, 2012. Qualis: A1
43.	MACHADO, BIRAJARA SOARES ; KUNICKI, ANA CAROLINA BIONE ; MORYA, EDGARD ; Sameshima, Koichi. Spectral characteristics of the hippocampal LFP during contextual fear conditioning. Einstein (São Paulo). v. 10, p. 140-144, 2012. Qualis: B1
44.	Manetti, M. E. ; ROSSI, M. ; CRUZ, G. M. Q. ; SACCARO, N. L. ; NAKABASHI, M. ; ALTEBARMAKIAN, V. ; RODIER-GOUD, M. ; DOMINGUES, D. ; D?HONT, A. ; SLUYS, M. A.. Mutator System Derivatives Isolated from Sugarcane Genome Sequence. Tropical Plant Biology. v. 5, p. 233-243, 2012. Qualis: A3
45.	Manque, Patricio A. ; Woehlbier, Ute ; Lara, Ana M. ; Tenjo, Fernando ; Alves, João M. ; Buck, Gregory A.. Identification and Characterization of a Novel Calcium-Activated Apyrase from Cryptosporidium Parasites and Its Potential Role in Pathogenesis. Plos One. v. 7, p. e31030, 2012. Qualis: A1
46.	MARTINS, ALINE REDONDO ; CARMELLO-GUERREIRO, SANDRA MARIA ; BUCKERIDGE, MARCOS SILVEIRA ; SILVA, CLOVIS OLIVEIRA ; APPEZZATO-DA-GLÓRIA, BEATRIZ. Seed ontogeny and endosperm chemical analysis in Smilax polyantha (Smilacaceae). Australian Journal of Botany (Print). v. 60, p. 693-699, 2012. Qualis: A4
47.	MARTINS, CAMILA MARINELLI ; Mohamed, Ahmed ; GUIMARÃES, ANA MARCIA SÁ ; DE BARROS, CRISTIANE DA CONCEIÇÃO ; PAMPUCH, RAQUEL DOS SANTOS ; SVOBODA, WALFRIDO ; GARCIA, RITA DE CASSIA MARIA ; FERREIRA, FERNANDO ; Biondo, Alexander Welker. Impact of demographic characteristics in pet ownership: Modeling animal count according to owners income and age. Preventive Veterinary Medicine (Print). v. 107, p. 1, 2012. Qualis: A1
48.	Maschietto, Mariana ; Silva, Aderbal R. ; Puga, Renato D. ; Lima, Leandro ; Pereira, Carlos B. ; Nakano, Eduardo Y. ; Mello, Barbara ; Gama, Clarissa S. ; Belmonte-de-Abreu, Paulo ; Carraro, Dirce M. ; Palha, Joana A. ; Brentani, Helena. Gene expression of peripheral blood lymphocytes may discriminate patients with schizophrenia from controls. Psychiatry Research (Print). v. 200, p. 1018-1021, 2012. Qualis: A4
49.	MASSARO, J. D. ; EVANGELISTA, A. F. ; CASTELLI, E. C. ; Giuliatti, S. ; DONADI, E. A.. In Silico Analysis of HLA-G Promoter Region to Identify DNA Elements Near to SNPS and Transcription Alterations Evidences. Tissue Antigens. v. 80, p. 100-100, 2012.Qualis: Não identificado (TISSUE ANTIGENS)
50.	MORAIS, ENYARA R. ; Oliveira, Katia C. ; MAGALHÃES, LIZANDRA G. ; MOREIRA, ÉRIKA B.C. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; RODRIGUES, Vanderlei. Effects of curcumin on the parasite Schistosoma mansoni: A transcriptomic approach. Molecular and Biochemical Parasitology (Print). v. 187, p. 91-97, 2012. Qualis: A4
51.	Nakaya, Helder I.; Pulendran, Bali. Systems vaccinology. Current Opinion in HIV and AIDS (Print). v. 7, p. 24-31, 2012. Qualis: Não identificado (CURRENT OPINION IN HIV AND AIDS)
52.	Nakaya, Helder I; Gardner, Joy ; Poo, Yee-Suan ; Major, Lee ; Pulendran, Bali ; Suhrbier, Andreas. Gene profiling of chikungunya virus arthritis reveals significant overlap with rheumatoid arthritis. Arthritis and Rheumatism. v. 64, p. n/a-n/a, 2012. Qualis: Não identificado (ARTHRITIS AND RHEUMATISM)
53.	Novaes, Jeniffer ; RANGEL, L. T. L. D. ; FERRO, M. ; Abe, Ricardo Y. ; Manha, Alessandra P.S. ; de Mello, Joana C.M. ; Varuzza, Leonardo ; DURHAM, A. M. ; Madeira, Alda Maria B.N. ; Gruber, Arthur. A comparative transcriptome analysis reveals expression profiles conserved across three Eimeria spp. of domestic fowl and associated with multiple developmental stages. International Journal for Parasitology. v. 42, p. 39-48, 2012. Qualis: A1
54.	Oliveira, Katia C. ; Carvalho, Mariana L.P. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; LoVerde, Philip T.. Effect of human TGF-β on the gene expression profile of Schistosoma mansoni adult worms. Molecular and Biochemical Parasitology (Print). v. 183, p. 132-139, 2012. Qualis: A4
55.	OLIVEIRA, S. T. ; Messick, J.B. ; Biondo, Alexander W. ; Santos, A. P. ; STEDILE, R. ; DALMOLIN, M. L. ; Guimaraes, A.M.S. ; MOHAMED, A. ; RIEDIGER, I. ; GONZALEZ, F. H. D.. Exposure to Leptospira spp. in sick dogs, shelter dogs and dogs from an endemic area: points to consider. Acta Scientiae Veterinariae (Online). v. 40, p. 1056, 2012.Qualis: Não identificado (IN SICK DOGS, SHELTER DOGS AND DOGS FROM AN ENDEMIC AREA: POINTS TO CONSIDER. ACTA SCIENTIAE VETERINARIAE)
56.	PAIXAO-CORTES, V. R. ; VISCARDI, L. ; SALZANO, F. M. ; HÜNEMEIER, T. ; BORTOLINI, M. C.. Homo sapiens, Homo neanderthalensis and the Denisova specimen: new insights on their evolutionary histories using whole-genome comparisons. Genetics and Molecular Biology (Impresso). v. 35, p. 904-911, 2012. Qualis: A4
57.	Palhares, Alessandra C ; Maccheroni, Walter ; Souza, Anete P ; Marconi, Thiago G ; Mollinari, Marcelo ; Gazaffi, Rodrigo ; Garcia, Antonio Augusto F ; Vieira, Maria Lucia Carneiro ; Rodrigues-Morais, Taislene B ; Jordão, Hamilton ; Van Sluys, Marie-Anne ; Domingues, Douglas S ; et.al. A novel linkage map of sugarcane with evidence for clustering of retrotransposon-based markers. BMC Genetics (Online). v. 13, p. 51, 2012. Qualis: A3
58.	Patavino, Giuseppina Maria ; De Almeida-Neto, Cesar ; Liu, Jing ; Wright, David J. ; Mendrone-Junior, Alfredo ; Ferreira, Maria Inês Lopes ; de Freitas Carneiro, Anna Bárbara ; Custer, Brian ; Ferreira, João Eduardo ; Busch, Michael P. ; Sabino, Ester Cerdeira. Number of recent sexual partners among blood donors in Brazil: associations with donor demographics, donation characteristics, and infectious disease markers. Transfusion (Arlington, Va.). v. 52, p. 151-159, 2012. Qualis: A3
59.	REICH, D. ; Patterson, N ; Campbell D ; Mazières S ; Ray, N ; Parra, Maria V. ; Rojas, W ; Duque, Constanza ; Mesa, N ; García, LF ; Triana, O ; Blair, S ; Maestre, A ; Dib, JC ; Bravi, CM ; Bailliet, G ; Corach, D ; HÜNEMEIER, T. ; BORTOLINI, M. C. ; SALZANO, F. M. ; et.al. Reconstructing Native American population history. Nature (London). v. 00, p. 00-00, 2012. Qualis: A1
60.	Reis, Eduardo M. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Perspectives of Long Non-Coding RNAs in Cancer Diagnostics. Frontiers in Genetics. v. 3, p. 32, 2012. Qualis: A2
61.	RODRIGUES, T. C. ; CARVALHO, F. ; Verjovski-Almeida, S. ; Krepischi, A. C. V. ; Rosenberg, C.. Abstract 1168: Identification of CNA signatures in prostate cancer: Narrowing chromosome regions related with occurrence, prognosis and recurrence after treatment. Cancer Research (Chicago, Ill.). v. 72, p. 1168, 2012. Qualis: A1
62.	Sabino, Ester C. ; Gonçalez, Thelma T. ; Carneiro-Proietti, Anna Bárbara ; Sarr, Moussa ; Ferreira, João Eduardo ; Sampaio, Divaldo A. ; Salles, Nanci A. ; Wright, David J. ; Custer, Brian ; Busch, Michael ; FOR THE NHLBI RETROVIRUS EPIDEMIOLOGY DONOR STUDY-II (REDS-II), INTERNATIONAL COMPONENT. Human immunodeficiency virus prevalence, incidence, and residual risk of transmission by transfusions at Retrovirus Epidemiology Donor Study-II blood centers in Brazil. Transfusion (Arlington, Va.). v. 52, p. 870-879, 2012. Qualis: A3
63.	SALLES, IVAN S. ; BUCKERIDGE, MARCOS S.. Cronobiologia vegetal: aspectos fisiológicos de um relógio verde. Revista da Biologia. v. 9, p. 45-49, 2012. Qualis: B4
64.	SALLES, IVAN S. ; BUCKERIDGE, MARCOS S.. Coordenação temporal da degradação das reservas dos cotilédones de jatobá (Himenaea courbaril L.). Revista da Biologia. v. 9, p. 50-52, 2012. Qualis: B4
65.	Santos, A. P. ; GUIMARÃES, A. M. S. ; do Nascimento, Naila C ; SanMiguel, Phillip ; Messick, Joanne B. Complete Genome Sequence of Mycoplasma wenyonii Strain Massachusetts. Journal of Bacteriology (Print). v. 194, p. 5458-5459, 2012.Qualis: A3
66.	SANTOS, W. D. ; Adriana Froutman Lopes ; BARONI, A. M. ; Alcântara, P. H. N. ; BUCKERIDGE, M. S.. Penicillium citrinum Polysaccharidases. Journal of Agronomical Sciences. v. 1, p. 139-152-152, 2012.Qualis: C (JOURNAL OF AGRONOMIC SCIENCES)
67.	SEBOLLELA, A. ; FREITAS-CORREA, L. ; Oliveira, F. F. ; Paula-Lima, A. C. ; Saraiva, L. M. ; Martins, S. M. ; Carvalho Mota, L. D. ; Torres, C. ; Alves-Leon, S. ; de Souza, J. M. ; CARRARO, D. M. ; BRENTANI, H. ; De Felice, F. G. ; FERREIRA, S. T.. Amyloid- oligomers induce differential gene expression in adult human brain slices. The Journal of Biological Chemistry (Print). v. 287, p. 7436-7445, 2012. Qualis: A1
68.	SILVA, ADERBAL R. T. ; GRINBERG, LEA T. ; FARFEL, JOSE M. ; DINIZ, BRENO S. ; LIMA, LEANDRO A. ; SILVA, PAULO J. S. ; FERRETTI, RENATA E. L. ; ROCHA, RAFAEL M. ; FILHO, WILSON JACOB ; Carraro, Dirce M. ; BRENTANI, HELENA ; GINSBERG, STEPHEN D.. Transcriptional Alterations Related to Neuropathology and Clinical Manifestation of Alzheimer¿s Disease. Plos One. v. 7, p. e48751, 2012. Qualis: A1
69.	SLATER, S. ; Setubal, Joao C ; HOUMIEL, K. ; SUN, J. ; KAUL, R. ; GOLDMAN, B. ; FARRAND, S. ; Almeida, Nalvo F ; BURR, T. ; NESTER, E. W. ; RHOADS, D. ; WELCH, R. ; WOOD, Derek W.. The Genome of Agrobacterium tumefaciens C58: Reconciliation of sequence data, updated annotation, and distribution of linear chromosome in genus Agrobacterium.. Applied and Environmental Microbiology (Print),. p. 1414-1417, 2012. Qualis: A1 (APPLIED AND ENVIRONMENTAL MICROBIOLOGY)
70.	Ullmann, Leila Sabrina ; Hoffmann, Juliano Leônidas ; de Moraes, Wanderlei ; Cubas, Zalmir Silvino ; dos Santos, Leonilda Correia ; da Silva, Rodrigo Costa ; MOREIRA, N. ; GUIMARÃES, A. M. S. ; CAMOSSI, L. G. ; Langoni, Helio ; Biondo, Alexander W.. Serologic Survey for Leptospira spp. in Captive Neotropical Felids in Foz do Iguaçu, Paraná, Brazil. Journal of Zoo and Wildlife Medicine. v. 43, p. 223-228, 2012.Qualis: Não identificado (IN CAPTIVE NEOTROPICAL FELIDS IN FOZ DO IGUAÇU, PARANÁ, BRAZIL. JOURNAL OF ZOO AND WILDLIFE MEDICINE)
71.	Varani, Alessandro M. ; MONTEIRO-VITORELLO, CLAUDIA B. ; ALMEIDA, LUIZ G.P. DE ; SOUZA, RANGEL C. ; CUNHA, OBERDAN L. ; Lima, Wanessa C. ; Civerolo, Edwin ; SLUYS, MARIE-ANNE VAN ; VASCONCELOS, ANA T.R.. Xylella fastidiosa comparative genomic database is an information resource to explore the annotation, genomic features, and biology of different strains. Genetics and Molecular Biology (Impresso). v. 35, p. 149-152, 2012. Qualis: A4
72.	VARANI, ALESSANDRO M. ; MONTEIRO-VITORELLO, CLAUDIA BARROS ; Nakaya, Helder I. ; Van Sluys, Marie-Anne. The Role of Prophage in Plant-Pathogenic Bacteria. Annual Review of Phytopathology (Print). v. 51, p. 130531172133008, 2012. Qualis: A1
73.	Verjovski-Almeida, S.; Paschoal, Alexandre Rossi ; Maracaja-Coutinho, Vinicius ; Setubal, João Carlos ; Simões, Zilá Luz Paulino ; Verjovski-Almeida, Sergio ; Durham, Alan Mitchell. Non-coding transcription characterization and annotation: A guide and web resource for non-coding RNA databases. RNA Biology. v. 9, p. 274-282, 2012. Qualis: A2
74.	VIBRANOVSKI, M. D.; ZHANG, Y. ; KEMKEMER, C. ; LOPES, H. F. ; KARR, T. L. ; LONG, M.. Re-analysis of the larval testis data on meiotic sex chromosome inactivation revealed evidence for tissue-specific gene expression related to the drosophila X chromosome. BMC Biology. v. 10, p. 49, 2012. Qualis: A1
75.	VIBRANOVSKI, M. D.; ZHANG, Y. ; KEMKEMER, C. ; VANKUREN, N. W. ; LOPES, H. F. ; Karr T.L. ; LONG, M.. Segmental dataset and whole body expression data do not support the hypothesis that non-random movement is an intrinsic property of Drosophila retrogenes. BMC Evolutionary Biology (Online). v. 12, p. 169, 2012. Qualis: A1
76.	VICENTE, F. F. R. ; LOPES, F. M. ; HASHIMOTO, R. F. ; CESAR JUNIOR, R. M.. Assessing the Gain of Biological Data Integration in Gene Networks Inference. BMC Genomics. v. 13, p. 1-12, 2012. Qualis: A2
77.	VICENTINI, R. ; NOGUEIRA, F. T. S. ; Vincentz, M. ; BEM, L. E. V. ; SLUYS, M. A.. Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs. Tropical Plant Biology (Online). v. 1, p. 1, 2012. Qualis: A3
78.	WANG, JUN ; LONG, MANYUAN ; VIBRANOVSKI, MARIA D.. Retrogenes Moved Out of the Z Chromosome in the Silkworm. Journal of Molecular Evolution. v. 74, p. 113-126, 2012. Qualis: A3
79.	Wattam, A. R. ; INZANA, T. J. ; Williams, K. P. ; Mane, S. P. ; Shukla, M. ; Almeida, N. F. ; Dickerman, A. W. ; MASON, S. ; MORIYON, I. ; O'CALLAGHAN, D. ; WHATMORE, A. M. ; Sobral, B. W. ; Tiller, R. V. ; Hoffmaster, A. R. ; Frace, M. A. ; DE CASTRO, C. ; MOLINARO, A. ; Boyle, S. M. ; De, B. K. ; SETUBAL, J. C. ; et.al. Comparative Genomics of Early-Diverging Brucella Strains Reveals a Novel Lipopolysaccharide Biosynthesis Pathway. MBIO. v. 3, p. e00246-12-e00246-12, 2012. Qualis: A1
80.	WILSON, M. L. ; CAI, Y. ; HANLON, R. ; TAYLOR, S. ; CHEVREUX, B. ; SETUBAL, J. C. ; Tyler, B. M. ; PECCOUD, J.. Sequence verification of synthetic DNA by assembly of sequencing reads. Nucleic Acids Research (Online). v. 41, p. e25-e25, 2012. Qualis: A1
81.	ZHANG, DAPENG ; De Souza, Robson F ; Anantharaman, Vivek ; Iyer, Lakshminarayan M ; Aravind, L. Polymorphic toxin systems: Comprehensive characterization of trafficking modes, processing, mechanisms of action, immunity and ecology using comparative genomics. BIOL DIRECT. v. 7, p. 18, 2012. Qualis: Não identificado (BIOL DIRECT)
82.	ZHANG, YONG E. ; LANDBACK, PATRICK ; VIBRANOVSKI, MARIA ; LONG, MANYUAN. New genes expressed in human brains: Implications for annotating evolving genomes. BioEssays (Cambridge). v. 34, p. 982-991, 2012. Qualis: A1
83.	ZPEVAK, FRANCISCO ANTONIO ; PEREZ, SÔNIA CRISTINA JULIANO GÜALTIERI DE ; BUCKERIDGE, MARCOS SILVEIRA. Isothermal seed germination of Adenanthera pavonina. Brazilian Journal of Botany. v. 35, p. 401-408, 2012. Qualis: B1

2011

1.	Alves, João M. P.; Voegtly, Logan ; Matveyev, Andrey V. ; Lara, Ana M. ; da Silva, Flávia Maia ; Serrano, Myrna G. ; Buck, Gregory A. ; Teixeira, Marta M. G. ; Camargo, Erney P.. Identification and Phylogenetic Analysis of Heme Synthesis Genes in Trypanosomatids and Their Bacterial Endosymbionts. Plos One. v. 6, p. e23518, 2011. Qualis: A1
2.	Amorim, Henrique V. ; Lopes, Mário Lucio ; Castro Oliveira, Juliana Velasco ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S. ; Goldman, Gustavo Henrique. Scientific challenges of bioethanol production in Brazil. Applied Microbiology and Biotechnology. v. 91, p. 1267-1275, 2011. Qualis: A2
3.	Amui, Saulo França ; Puga, Renato David ; Martins Soares, Andreimar ; Giuliatti, Silvana. Plant-antivenom: Database of anti-venom medicinal plants. Electronic Journal of Biotechnology. v. 14, p. 1-9, 2011. Qualis: A4
4.	Anghinah, R. ; Kanda, Paulo Afonso Medeiros ; Lopes, Helder Frederico ; Basile, Luis Fernando Hindi ; Machado, Sérgio ; Ribeiro, Pedro ; Velasques, Bruna ; Sameshima, K. ; Takahashi, D. Y. ; Pinto, Lécio Figueira ; Caramelli, P. ; Caramelli, Paulo. Alzheimer's disease qEEG: spectral analysis versus coherence. which is the best measurement?. Arquivos de Neuro-Psiquiatria (Impresso). v. 69, p. 871-874, 2011. Qualis: B2
5.	Araujo-Montoya, B.O. ; Rofatto, H.K. ; Tararam, C.A. ; Farias, L.P. ; Oliveira, K.C. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Wilson, R.A. ; Leite, L.C.C.. Schistosoma mansoni: Molecular characterization of Alkaline Phosphatase and expression patterns across life cycle stages. Experimental Parasitology,. p. 284-291, 2011. Qualis: A4 (EXPERIMENTAL PARASITOLOGY)
6.	Araújo, Luciano V ; Malkowski, Simon ; Braghetto, Kelly R ; Passos-Bueno, Maria R ; Zatz, Mayana ; Pu, Calton ; FERREIRA, JOÃO E. A rigorous approach to facilitate and guarantee the correctness of the genetic testing management in human genome information systems. BMC Genomics. v. 12, p. S13-8, 2011. Qualis: A2
7.	Bando, Silvia Y. ; Alegro, Maryana C. ; Amaro, Edson ; Silva, Alexandre V. ; Castro, Luiz H. M. ; Wen, Hung-Tzu ; Lima, Leandro de A. ; Brentani, Helena ; Brentani, H ; Moreira-Filho, Carlos Alberto. Hippocampal CA3 Transcriptome Signature Correlates with Initial Precipitating Injury in Refractory Mesial Temporal Lobe Epilepsy. Plos One. v. 6, p. e26268, 2011. Qualis: A1
8.	Begnami, Maria D. ; Fregnani, José Humberto T G ; Brentani, Helena ; Torres, Cesar ; Costa, Wilson Luiz ; Montagnini, Andre ; Nonogaki, Suely ; Soares, Fernando A. IDENTIFICATION OF PROTEIN EXPRESSION SIGNATURES IN GASTRIC CARCINOMAS USING CLUSTERING ANALYSIS. Journal of Gastroenterology and Hepatology. v. 27, p. 378-384, 2011. Qualis: A2
9.	Boes, Katie M. ; Goncarovs, Kristina O. ; Thompson, Craig A. ; Halik, Lindsay A. ; Santos, Andrea P. ; Guimaraes, Ana M. S. ; Feutz, Marybeth Miskovic ; Holman, Patricia J. ; Vemulapalli, Ramesh ; Messick, Joanne B.. Identification of a Mycoplasma ovis-like organism in a herd of farmed white-tailed deer (Odocoileus virginianus) in rural Indiana. Veterinary Clinical Pathology. v. 40, p. n/a-n/a, 2011. Qualis: A3
10.	Bogdanove, A. J. ; Koebnik, R. ; Lu, H. ; Furutani, A. ; Angiuoli, S. V. ; Patil, P. B. ; Van Sluys, M.-A. ; Ryan, R. P. ; Meyer, D. F. ; Han, S.-W. ; Aparna, G. ; Rajaram, M. ; Delcher, A. L. ; Phillippy, A. M. ; Puiu, D. ; Schatz, M. C. ; Shumway, M. ; Sommer, D. D. ; Trapnell, C. ; Benahmed, F. ; et.al. Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.. Journal of Bacteriology (Print). v. 193, p. 5450-5464, 2011. Qualis: A3
11.	Bousquet, Jean ; Anto, Josep M ; Sterk, Peter J ; Adcock, Ian M ; Chung, Kian ; Roca, Josep ; Agusti, Alvar ; Brightling, Chris ; Cambon-Thomsen, Anne ; Cesario, Alfredo ; Abdelhak, Sonia ; Antonarakis, Stylianos E ; Avignon, Antoine ; Ballabio, Andrea ; Baraldi, Eugenio ; Baranov, Alexander ; Bieber, Thomas ; Bockaert, Joël ; Brahmachari, Samir ; Verjovski-Almeida, S. ; et.al. Systems medicine and integrated care to combat chronic noncommunicable diseases. Genome Medicine. v. 3, p. 43, 2011. Qualis: A1
12.	BRENTANI, H. ; CABALLERO, O. ; CAMARGO, A. ; DASILVA, A. ; DASILVA, W. ; DIASNETO, E ; 11_other_authors ; RIGGINS, G. ; SIMPSON, A. J. ; SOUZA, S. ; STEVENSON, B. ; STRAUSBERG, R. ; TAJARA, E ; Verjovski-Almeida, S. ; AND.HCGP.CGAP.ANNOTATION.CONSORTIUM,. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. Proceedings of the National Academy of Sciences of the United States of America. v. 100, p. 13418-13423, 2011. Qualis: A1
13.	Brentani, Helena; Nakano, Eduardo Y ; Martins, Camila B ; Izbicki, Rafael ; Pereira, Carlos Alberto. Disequilibrium Coefficient: A Bayesian Perspective. Statistical Applications in Genetics and Molecular Biology. v. 10, p. art.22, 2011. Qualis: B1
14.	Cai, Rongman ; Lewis, James ; Yan, Shuangchun ; Liu, Haijie ; Clarke, Christopher R. ; Campanile, Francesco ; Almeida, Nalvo F. ; Studholme, David J. ; Lindeberg, Magdalen ; Schneider, David ; Zaccardelli, Massimo ; Setubal, Joao C. ; Morales-Lizcano, Nadia P. ; Bernal, Adriana ; Coaker, Gitta ; Baker, Christy ; Bender, Carol L. ; Leman, Scotland ; Vinatzer, Boris A.. The Plant Pathogen Pseudomonas syringae pv. tomato Is Genetically Monomorphic and under Strong Selection to Evade Tomato Immunity. PLoS Pathogens. v. 7, p. e1002130, 2011. Qualis: A1
15.	Cardoso-Cruz, H. ; Sameshima, K. ; Lima, D. ; Galhardo, V.. Dynamics of circadian thalamocortical flow of information during a peripheral neuropathic pain condition. Frontiers in Integrative Neuroscience. v. 5, p. 1-19, 2011. Qualis: A2
16.	Carraro, Dirce Maria ; Ferreira, Elisa Napolitano ; Molina, Gustavo de Campos ; Puga, Renato David ; Abrantes, Eduardo Fernandes ; Trapé, Adriana Priscila ; Ekhardt, Bedrich L. ; Nunes, Diana Noronha ; Brentani, Maria Mitzi ; Arap, Wadih ; Pasqualini, Renata ; Brentani, Helena ; Dias-Neto, Emmanuel ; Brentani, Ricardo Renzo. Poly (A)+ Transcriptome Assessment of ERBB2-Induced Alterations in Breast Cell Lines. Plos One. v. 6, p. e21022, 2011. Qualis: A1
17.	Carvalho, A. C. M. ; Bevilacqua, M. C. ; Sameshima, K. ; Costa Filho, O. A.. Auditory neuropathy/auditory dyssynchrony in children with cochlear implants. Brazilian Journal of Otorhinolaryngology (Impresso). v. 77, p. 481-487, 2011. Qualis: B1
18.	CHEN, MING ; ZOU, MING ; FU, BEIDE ; LI, XIN ; VIBRANOVSKI, MARIA D. ; GAN, XIAONI ; WANG, DENGQIANG ; WANG, WEN ; LONG, MANYUAN ; HE, SHUNPING. Evolutionary Patterns of RNA-Based Duplication in Non-Mammalian Chordates. Plos One. v. 6, p. e21466, 2011. Qualis: A1
19.	CHEN, Z. ; ZHANG, Y. ; VIBRANOVSKI, M. D. ; LUO, J. ; GAO, G. ; LONG, M.. Deficiency of X-Linked Inverted Duplicates with Male-Biased Expression and the Underlying Evolutionary Mechanisms in the Drosophila Genome. Molecular Biology and Evolution. v. 28, p. 2823-2832, 2011. Qualis: A1
20.	COLLEN, J. ; COLLEN, P. N. ; REIS, Marcelo da Silva ; PEDERSEN, M. ; SETUBAL, J. C. ; Varani, A. ; Colepicolo, P. ; OLIVEIRA, Mariana Cabral de. Analysis of expressed sequence tags from the agarophyte Gracilaria tenuistipitata (Rhodophyta). Journal of Applied Phycology. v. 24, p. 641-647, 2011. Qualis: A2
21.	Contini V ; BERTUZZI, G. P. ; Polina, Evelise R ; HÜNEMEIER, T. ; Hendler, Elisa M ; Hutz, M. ; Bau, CD. A haplotype analysis is consistent with the role of functional HTR1B variants in alcohol dependence. Drug and Alcohol Dependence. v. 00, p. 00000-00000, 2011. Qualis: A1
22.	De Almeida-Neto, Cesar ; Liu, Jing ; Wright, David J. ; Mendrone-Junior, Alfredo ; Takecian, Pedro L. ; Sun, Yu ; Ferreira, Joao Eduardo ; de Alencar Fischer Chamone, Dalton ; Busch, Michael P. ; Sabino, Ester Cerdeira ; FOR THE NHLBI RETROVIRUS EPIDEMIOLOGY DONOR STUDY-II (REDS-II), INTERNATIONAL COMPONENT. Demographic characteristics and prevalence of serologic markers among blood donors who use confidential unit exclusion (CUE) in São Paulo, Brazil: implications for modification of CUE polices in Brazil. Transfusion (Arlington, Va.). v. 51, p. 191-197, 2011. Qualis: A3
23.	Duraiswamy, J. ; Ibegbu, C. C. ; Masopust, D. ; Miller, J. D. ; Araki, K. ; Doho, G. H. ; Tata, P. ; Gupta, S. ; Zilliox, M. J. ; NAKAYA, H. I. ; Pulendran, B. ; Haining, W. N. ; Freeman, G. J. ; Ahmed, R.. Phenotype, Function, and Gene Expression Profiles of Programmed Death-1hi CD8 T Cells in Healthy Human Adults. The Journal of Immunology (1950). v. 186, p. 4200-4212, 2011. Qualis: A1
24.	Farias, Leonardo P. ; Tararam, Cibele A. ; Miyasato, Patricia A. ; Nishiyama, Milton Y. ; Oliveira, Katia C. ; KAWANO, Toshie ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Leite, Luciana Cezar de Cerqueira. Screening the Schistosoma mansoni transcriptome for genes differentially expressed in the schistosomulum stage in search for vaccine candidates. Parasitology Research (1987. Print). v. 108, p. 123-135, 2011. Qualis: Não identificado (PRINT))
25.	Freire, M. A.M. ; Morya, E. ; Fabre, J. ; Santos, J. R. ; Guimaraes, J. S. ; Lemos, A.M.N. ; Sameshima, K. ; Pereira, A. ; Ribeiro, S. ; Nicolelis, M. A. L.. Comprehensive Analysis of Tissue Preservation and Recording Quality from Chronic Multielectrode Implants. Plos One. v. 6, p. e27554, 2011. Qualis: A1
26.	Garsmeur, Olivier ; Charron, Carine ; Bocs, Stéphanie ; Jouffe, Vincent ; Samain, Sylvie ; Couloux, Arnaud ; Droc, Gaëtan ; Zini, Cyrille ; Glaszmann, Jean-Christophe ; Van Sluys, Marie-Anne ; D¿Hont, Angélique. High homologous gene conservation despite extreme autopolyploid redundancy in sugarcane. New Phytologist (Print). v. 189, p. 629-642, 2011. Qualis: A1
27.	Gazarini, Marcos L. ; Beraldo, Flávio H. ; Almeida, Fabiana M. ; Bootman, Martin ; da Silva, Aline M. ; Garcia, Célia R. S.. Melatonin triggers PKA activation in the rodent malaria parasite Plasmodium chabaudi. Journal of Pineal Research. v. 50, p. 64-70, 2011. Qualis: A1
28.	Genick, U. K. ; Kutalik, Z. ; Ledda, M. ; Destito, M. C. S. ; Cirillo, C. A. ; Godinot, N. ; Martin, N. ; Morya, E. ; Sameshima, K. ; Bergmann, S. ; Le Coutre, J.. Sensitivity of Genome-Wide-Association Signals to Phenotyping Strategy: The PROP-TAS2R38 Taste Association as a Benchmark. Plos One. v. 6, p. e27745, 2011. Qualis: A1
29.	Giolo, S.R. ; SOLER, J. M. P. ; Batista, M.J. ; ALMEIDA, M. A. A. ; Pereira, A.C.. Evidence of SNP effect on the risk of rheumatoid arthritis: effects of covariate adjustment upon association results. Revista Brasileira de Biometria. v. 29, p. 47-59, 2011.Qualis: C
30.	GIOLO, SUELY R ; SOLER, JÚLIA M P ; GREENWAY, STEVEN C ; ALMEIDA, MARCIO A A ; DE ANDRADE, MARIZA ; SEIDMAN, J G ; SEIDMAN, CHRISTINE E ; KRIEGER, JOSÉ E ; PEREIRA, ALEXANDRE C. Brazilian urban population genetic structure reveals a high degree of admixture. European Journal of Human Genetics. v. 20, p. 111-116, 2011. Qualis: A3
31.	Grazziotin, Ana Laura ; Santos, Andrea Pires ; Guimaraes, Ana Marcia Sa ; Mohamed, Ahmed ; Cubas, Zalmir Silvino ; Oliveira, Marcos Jose de ; Santos, Leonilda Correia dos ; de Moraes, Wanderlei ; Vieira, Rafael Felipe da Costa ; Donatti, Lucelia ; Filho, Ivan Roque de Barros ; Biondo, Alexander Welker ; Messick, Joanne Belle. Mycoplasma ovis in captive cervids: prevalence, molecular characterization and phylogeny. Veterinary Microbiology (Amsterdam. Print),. p. 1, 2011. Qualis: Não identificado (PRINT),)
32.	GRAZZIOTTIN, A. L. ; DUARTE, J. M. B. ; SZABO, M. P. J. ; Santos, A.P. ; GUIMARAES, A. M. S. ; Mohamed, Ahmed ; Vieira, Rafael F.C. ; BARROS FILHO, I. R. ; BIONDO, A. W. ; Messick, J.B.. Prevalence and molecular characterization of Mycoplasma ovis in selected free-ranging Brazilian deer populations. Journal of Wildlife Diseases. v. 47, p. 1005-1011, 2011.Qualis: A3
33.	Guimaraes, A.M.S.; Vieira, R.F.C. ; Poletto, R. ; VEMULAPALLI, R. ; Santos, A.P. ; de Moraes, W. ; Cubas, Z.S. ; Santos, L.C. ; Marchant-Forde, J.N. ; TIMENETSKY, J. ; Biondo, A.W. ; Messick, J.B.. A quantitative TaqMan PCR assay for the detection of Mycoplasma suis. Journal of Applied Microbiology (Print),. p. no-no, 2011. Qualis: A3 (JOURNAL OF APPLIED MICROBIOLOGY)
34.	Guimaraes, Ana M. S.; Santos, Andrea P. ; SanMiguel, Phillip ; Walter, Thomas ; Timenetsky, Jorge ; Messick, Joanne B.. Complete Genome Sequence of Mycoplasma suis and Insights into Its Biology and Adaption to an Erythrocyte Niche. Plos One. v. 6, p. e19574, 2011. Qualis: A1
35.	Hamilton, T. L. ; LUDWIG, M. ; DIXON, R. ; Boyd, E. S. ; dos SANTOS, P. C. ; SETUBAL, J. C. ; BRYANT, D. A. ; Dean, D. R. ; PETERS, J. W.. Transcriptional Profiling of Nitrogen Fixation in Azotobacter vinelandii. Journal of Bacteriology (Print). v. 193, p. 4477-4486, 2011. Qualis: A3
36.	Higa, Carlos HA ; Louzada, Vitor HP ; Andrade, Tales P ; Hashimoto, Ronaldo F. Constraint-based analysis of gene interactions using restricted boolean networks and time-series data. BMC Proceedings. v. 5, p. S5, 2011. Qualis: Não identificado (BMC PROCEEDINGS)
37.	HORIMOTO, ANDREA R V R ; GIOLO, SUELY R ; OLIVEIRA, CAMILA M ; ALVIM, RAFAEL O ; SOLER, JULIA P ; DE ANDRADE, MARIZA ; KRIEGER, JOSE E ; PEREIRA, ALEXANDRE C. Heritability of physical activity traits in Brazilian families: the Baependi Heart Study. BMC Medical Genetics (Online). v. 12, p. 155, 2011. Qualis: A4
38.	JACINTO, DANIELE S. ; MUNIZ, HELOISA DOS SANTOS ; Venancio, Thiago M. ; Wilson, R. Alan ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; DEMARCO, Ricardo. Curupira-1 and Curupira-2, two novel Mutator-like DNA transposons from the genomes of human parasites Schistosoma mansoni and Schistosoma japonicum. Parasitology (London. Print). v. 138, p. 1124-1133, 2011. Qualis: Não identificado (PRINT))
39.	Jalan, N. ; Aritua, V. ; Kumar, D. ; Yu, F. ; Jones, J. B. ; Graham, J. H. ; SETUBAL, J. C. ; Wang, N.. Comparative Genomic Analysis of Xanthomonas axonopodis pv. citrumelo F1, Which Causes Citrus Bacterial Spot Disease, and Related Strains Provides Insights into Virulence and Host Specificity. Journal of Bacteriology (Print). v. 193, p. 6342-6357, 2011. Qualis: A3
40.	Kasturi, Sudhir Pai ; Skountzou, Ioanna ; Albrecht, Randy A. ; Koutsonanos, Dimitrios ; Hua, Tang ; Nakaya, Helder I. ; Ravindran, Rajesh ; Stewart, Shelley ; Alam, Munir ; Kwissa, Marcin ; Villinger, Francois ; Murthy, Niren ; Steel, John ; Jacob, Joshy ; Hogan, Robert J. ; García-Sastre, Adolfo ; Compans, Richard ; Pulendran, Bali. Programming the magnitude and persistence of antibody responses with innate immunity. Nature (London). v. 470, p. 543-547, 2011. Qualis: A1
41.	Lima, F. A. ; Moreira-Filho, C. A. ; Ramos, P. L. ; BRENTANI, H. ; Lima, L. d. A. ; Arrais, M. ; Bento-de-Souza, L. C. ; Bento-de-Souza, L. ; Duarte, M. I. ; Coutinho, A. ; Carneiro-Sampaio, M.. Decreased AIRE Expression and Global Thymic Hypofunction in Down Syndrome. The Journal of Immunology (1950). v. 187, p. 3422-3430, 2011. Qualis: A1
42.	Manque, P. A. ; Fernando A. Tenjo ; Ute Woehlbier ; Ana M. Lara ; SERRANO, M. G. ; XU, P. ; Alves, Joao M ; Ronald Smeltz ; Daniel Conrad ; BUCK, G. A.. Identification and immunological characterization of three potential vaccinogens against Cryptosporidium. Clinical and Vaccine Immunology. v. 18, p. 1796-1802, 2011. Qualis: A3
43.	Manque, P. A. ; Probst, C. ; PEREIRA, M. C. S. ; RAMPAZZO, R. C. P. ; OZAKI, L. S. ; PAVONI, D. P. ; Silva Neto, D. T. ; CARVALHO, M. R. ; XU, P. ; SERRANO, M. G. ; ALVES, J. M. P. ; Meirelles, M. d. N. S. L. ; GOLDENBERG, S. ; KRIEGER, M. A. ; BUCK, G. A.. Trypanosoma cruzi Infection Induces a Global Host Cell Response in Cardiomyocytes. Infection and Immunity (Print). v. 79, p. 1855-1862, 2011. Qualis: A2
44.	Marques, Fernanda ; Sousa, João C ; Coppola, Giovanni ; Gao, Fuying ; Puga, Renato ; Brentani, Helena ; Geschwind, Daniel H ; Sousa, Nuno ; Correia-Neves, Margarida ; Palha, Joana A. Transcriptome signature of the adult mouse choroid plexus. Fluids and Barriers of the CNS. v. 8, p. 10, 2011. Qualis: A3
45.	Marques, L.M. ; BUZINHANI, M. ; Guimaraes, A.M.S. ; Marques, R.C.P. ; Farias, S.T. ; Neto, R.L. ; YAMAGUTI, M. ; Oliveira, R.C. ; TIMENETSKY, J.. Intraspecific sequence variation in 16S rRNA gene of Ureaplasma diversum isolates. Veterinary Microbiology (Amsterdam. Print),. p. 2, 2011. Qualis: Não identificado (PRINT),)
46.	Maschietto, M ; Trapé, A P ; Piccoli, F S ; Ricca, T I ; Dias, A A M ; Coudry, R A ; Galante, P A ; Torres, C ; Fahhan, L ; Lourenço, S ; Grundy, P E ; de Camargo, B ; de Souza, S ; Neves, E J ; Soares, F A ; Brentani, H ; Carraro, D M. Temporal blastemal cell gene expression analysis in the kidney reveals new Wnt and related signaling pathway genes to be essential for Wilms' tumor onset. CELL DEATH DIS. v. 2, p. e224, 2011. Qualis: Não identificado (CELL DEATH DIS)
47.	Maschietto, Mariana ; Piccoli, Fabio S. ; Costa, Cecilia M.L. ; Camargo, Luiz P. ; Neves, Jose I. ; Grundy, Paul E. ; Brentani, Helena ; Soares, Fernando A. ; Camargo, Beatriz de ; Carraro, Dirce M.. Gene expression analysis of blastemal component reveals genes associated with relapse mechanism in Wilms tumour. European Journal of Cancer. v. 47, p. 2715-2722, 2011. Qualis: A1
48.	Mayworm, M.A.S., ; BUCKERIDGE, M. S. ; Marquez, U.M.L. ; Salatino A. Nutritional reserves of Vochysiaceae seeds: chemical diversity and potential economic uses. Anais da Academia Brasileira de Ciências (Impresso). v. 83, p. 523-531, 2011. Qualis: A2
49.	MESSICK, J. B. ; Santos, A. P. ; GUIMARAES, A. M. S.. Complete Genome Sequences of Two Hemotropic Mycoplasmas, Mycoplasma haemofelis Strain Ohio2 and Mycoplasma suis Strain Illinois. Journal of Bacteriology (Print). v. 193, p. 2068-2069, 2011. Qualis: A3
50.	Nakaya, Helder I.; Li, Shuzhao ; Pulendran, Bali. Systems vaccinology: learning to compute the behavior of vaccine induced immunity. WIRES SYST BIOL MED. v. 19, p. n/a-n/a, 2011. Qualis: Não identificado (WIRES SYST BIOL MED)
51.	Nakaya, Helder I; Wrammert, Jens ; Lee, Eva K ; Racioppi, Luigi ; Marie-Kunze, Stephanie ; Haining, W Nicholas ; Means, Anthony R ; Kasturi, Sudhir P ; Khan, Nooruddin ; Li, Gui-Mei ; McCausland, Megan ; Kanchan, Vibhu ; Kokko, Kenneth E ; Li, Shuzhao ; Elbein, Rivka ; Mehta, Aneesh K ; Aderem, Alan ; Subbarao, Kanta ; Ahmed, Rafi ; Pulendran, Bali ; et.al. Systems biology of vaccination for seasonal influenza in humans. Nature Immunology (Print). v. 12, p. 786-795, 2011. Qualis: A1
52.	Oliveira, K. C. ; Nery, F. G. ; Ferreti, R. E. L. ; Lima, M. C. ; Cappi, C. ; MACHADO-LIMA, A. ; Polichiso, L. ; Carreira, L. L. ; Ávila, C. ; Alho, A. T. D. L. ; BRENTANI, H. P. ; Miguel, E. C. ; Heinsen, H. ; Jacob-Filho, W. ; Pasqualucci, C. A. ; Lafer, B. ; Grinberg, L. T.. Brazilian psychiatric brain bank: a new contribution tool to network studies. Cell and Tissue Banking. v. 13, p. 315-326, 2011. Qualis: A4
53.	Oliveira, Katia C. ; Carvalho, Mariana L. P. ; Maracaja-Coutinho, V. ; KITAJIMA, J. P. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Non-coding RNAs in schistosomes: an unexplored world. Anais da Academia Brasileira de Ciências (Impresso). v. 83, p. 673-694, 2011. Qualis: A2
54.	PAULSEN, B. D. S. ; MACIEL, R. M. ; GALINA, A. ; SILVEIRA, M. S. ; SOUZA, C. S. ; DRUMMOND, H. ; POZZATTO, E. N. ; SILVA JUNIOR, H. ; CHICAYBAM, L. ; MASSUDA, R. ; SETTI-PERDIGAO, P. ; BONAMINO, M. ; ABREU, P. S. B. ; CASTRO, N. G. ; BRENTANI, H. ; REHEN, S. K.. Altered oxygen metabolism associated to neurogenesis of induced pluripotent stem cells derived from a schizophrenic patient. Cell Transplantation. v. XXX, p. XXX-XXX, 2011. Qualis: A2
55.	Potnis, Neha ; Krasileva, Ksenia ; Chow, Virginia ; Almeida, Nalvo F ; Patil, Prabhu B ; Ryan, Robert P ; Sharlach, Molly ; Behlau, Franklin ; Dow, J Max ; Momol, MT ; White, Frank F ; Preston, James F ; Vinatzer, Boris A ; Koebnik, Ralf ; Setubal, João C ; Norman, David J ; Staskawicz, Brian J ; Jones, Jeffrey B. Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics. v. 12, p. 146, 2011. Qualis: A2
56.	Ryan, Robert P. ; Vorhölter, Frank-Jörg ; Potnis, Neha ; Jones, Jeffrey B. ; Van Sluys, Marie-Anne ; Bogdanove, Adam J. ; Dow, J. Maxwell. Pathogenomics of Xanthomonas: understanding bacterium¿plant interactions. Nature Review, Microbiology (Print). v. 9, p. 344-355, 2011. Qualis: A1
57.	Santos, Andrea P ; Guimaraes, Ana MS ; do Nascimento, Naila C ; SanMiguel, Phillip J ; Martin, Samuel W ; Messick, Joanne B. Genome of Mycoplasma haemofelis, unraveling its strategies for survival and persistence. Veterinary Research. v. 42, p. 102, 2011. Qualis: A1
58.	Santos, Rosângela Portilho Costa ; Benvenuti, Ticiana Thomazine ; Honda, Suzana Terumi ; Valle, Paulo Roberto ; Katayama, Maria Lucia Hirata ; Brentani, Helena Paula ; Carraro, Dirce Maria ; Rozenchan, Patrí ; Brentani, Maria Mitzi ; Lyra, Eduardo Carneiro ; Torres, César Henrique ; Salzgeber, Marcia Batista ; Kaiano, Jane Haruko Lima ; Góes, João Carlos Sampaio ; Folgueira, Maria Aparecida Azevedo Koike. Influence of the interaction between nodal fibroblast and breast cancer cells on gene expression. Tumor Biology. v. 32, p. 145-157, 2011. Qualis: A4
59.	Schlesinger, D ; Grinberg, L T ; Alba, J G ; Naslavsky, M S ; Licinio, L ; Farfel, J M ; Suemoto, C K ; de Lucena Ferretti, R E ; Leite, R E P ; de Andrade, M P ; dos Santos, A C F ; Brentani, H ; Pasqualucci, C A ; Nitrini, R ; Jacob-Filho, W ; Zatz, M. African ancestry protects against Alzheimer's disease-related neuropathology. Molecular Psychiatry. v. 18, p. 79-85, 2011. Qualis: A1
60.	Setta, Nathalia ; Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia Marcia Aparecida. Copia Retrotransposon in the Zaprionus Genus: Another Case of Transposable Element Sharing with the Drosophila melanogaster Subgroup. Journal of Molecular Evolution. v. 72, p. 326-338, 2011. Qualis: A3
61.	Silva, Giovanna B. ; Ionashiro, Mari ; Carrara, Thalita B. ; Crivellari, Augusto C. ; Tine, M. A. S. ; Prado, Jefferson ; Carpita, Nicholas C. ; BUCKERIDGE, MARCOS S.. Cell wall polysaccharides from fern leaves: Evidence for a mannan-rich Type III cell wall in Adiantum raddianum. Phytochemistry. v. 72, p. 2352-2360, 2011. Qualis: A2
62.	SOUZA, GLAUCIA MENDES ; BERGES, HELENE ; BOCS, STEPHANIE ; CASU, ROSANNE ; D'HONT, ANGELIQUE ; FERREIRA, JOÃO EDUARDO ; HENRY, ROBERT ; Ming, Ray ; POTIER, BERNARD ; Sluys, Marie-Anne ; VINCENTZ, Michel ; PATERSON, ANDREW H.. The Sugarcane Genome Challenge: Strategies for Sequencing a Highly Complex Genome. Tropical Plant Biology (Online). v. 4, p. 145-156, 2011. Qualis: A3
63.	Staquicini, F. I. ; Cardo-Vila, M. ; Kolonin, M. G. ; Trepel, M. ; Edwards, J. K. ; Nunes, D. N. ; Sergeeva, A. ; Efstathiou, E. ; Sun, J. ; Almeida, N. F. ; Tu, S.-M. ; Botz, G. H. ; Wallace, M. J. ; O'Connell, D. J. ; Krajewski, S. ; Gershenwald, J. E. ; Molldrem, J. J. ; Flamm, A. L. ; Koivunen, E. ; SETUBAL, J. C. ; et.al. Vascular ligand-receptor mapping by direct combinatorial selection in cancer patients. Proceedings of the National Academy of Sciences of the United States of America. v. 108, p. 1-6, 2011. Qualis: A1
64.	Tahira, Ana C ; Kubrusly, Márcia S ; Faria, Michele F ; Dazzani, Bianca ; Fonseca, Rogério S ; Maracaja-Coutinho, Vinicius ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Machado, Marcel CC ; REIS, Eduardo M. Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer. Molecular Cancer. v. 10, p. 141, 2011. Qualis: A1
65.	Trape, A. P. ; KATAYAMA, M. L. H. ; ROELA, R. A. ; BRENTANI, H. ; Ravacci, G. R. ; Lima, L. A. ; BRENTANI, M. M.. Gene expression profile in response to doxorubicin-rapamycin combined treatment of HER-2 overexpressing human mammary epithelial cell lines. Molecular Cancer Therapeutics. v. 11, p. 464-474, 2011. Qualis: A1
66.	Verjovski-Almeida, S.; Verjovski-Almeida, S. ; DEMARCO, Ricardo. Gene structure and splicing in schistosomes. Journal of Proteomics. v. 74, p. 1515-1518, 2011. Qualis: A1
67.	VIEIRA, R. F. C. ; BIONDO, A. W. ; GUIMARAES, A. M. S. ; Santos, A.P. ; SANTOS, R. P. ; DUTRA, L. H. ; DINIZ, P. P. ; de Morais, H. A. ; MESSICK, J. B. ; LABRUNA, M. B. ; VIDOTTO, O.. Ehrlichiosis in Brazil. Revista Brasileira de Parasitologia Veterinária (Impresso). v. 20, p. 1-12, 2011.Qualis: A2
68.	VIEIRA, R. F. C. ; Molento, M.B. ; GUIMARAES, A. M. S. ; Santos, A.P. ; Bonat, Marcelo ; JAVOROUSKI, M. L. ; POPP, L. ; SANTOS, L. C. ; MORAES, W. ; CUBAS, Z. S. ; VIEIRA, T. S. W. J. ; VIDOTTO, O. ; BARROS FILHO, I. R. ; BIONDO, A. W. ; MESSICK, J. B.. Use of a Mycoplasma suis-PCR protocol for screening a population of captive peccaries (Tayassu tajacu and Tayassu pecari). Revista Brasileira de Parasitologia Veterinária (Impresso). v. 20, p. 75-77, 2011.Qualis: A2
69.	Wibberg, Daniel ; Blom, Jochen ; Jaenicke, Sebastian ; Kollin, Florian ; Rupp, Oliver ; Scharf, Birgit ; Schneiker-Bekel, Susanne ; Sczcepanowski, Rafael ; Goesmann, Alexander ; Setubal, Joao Carlos ; Schmitt, Rüdiger ; Pühler, Alfred ; Schlüter, Andreas. Complete genome sequencing of Agrobacterium sp. H13-3, the former Rhizobium lupini H13-3, reveals a tripartite genome consisting of a circular and a linear chromosome and an accessory plasmid but lacking a tumor-inducing Ti-plasmid. Journal of Biotechnology. v. 155, p. 50-62, 2011. Qualis: A3
70.	YEPES, A. ; BUCKERIDGE, M. S.. Respuestas de las plantas ante los factores ambientales del cambio climático global. Revista IDEAS (Online). v. 14, p. 213-232, 2011.Qualis: C
71.	Zhang, Hongtao ; Setubal, Joao Carlos ; Zhan, Xiaobei ; Zheng, Zhiyong ; Yu, Lijun ; Wu, Jianrong ; Chen, Dingqiang. Component identification of electron transport chains in curdlan-producing Agrobacterium sp. ATCC 31749 and its genome-specific prediction using comparative genome and phylogenetic trees analysis. Journal of Industrial Microbiology & Biotechnology. v. 38, p. 667-677, 2011. Qualis: A3
72.	ZHANG, Y. E. ; VIBRANOVSKI, M. D. ; KRINSKY, B. H. ; LONG, M.. A cautionary note for retrocopy identification: DNA-based duplication of intron-containing genes significantly contributes to the origination of single exon genes. Bioinformatics (Oxford. Print). v. 27, p. 1749-1753, 2011. Qualis: Não identificado (PRINT))
73.	ZHANG, YONG E. ; LANDBACK, PATRICK ; VIBRANOVSKI, MARIA D. ; LONG, MANYUAN. Accelerated Recruitment of New Brain Development Genes into the Human Genome. PLoS Biology (Online). v. 9, p. e1001179, 2011. Qualis: A1

2010

1.	Almeida, Nalvo F. ; Yan, Shuangchun ; Cai, Rongman ; Clarke, Christopher R. ; Morris, Cindy E. ; Schaad, Norman W. ; Schuenzel, Erin L. ; Lacy, George H. ; Sun, Xiaoan ; Jones, Jeffrey B. ; Castillo, Jose A. ; Bull, Carolee T. ; Leman, Scotland ; Guttman, David S. ; Setubal, João C. ; Vinatzer, Boris A.. PAMDB, A Multilocus Sequence Typing and Analysis Database and Website for Plant-Associated Microbes. Phytopathology. v. 100, p. 208-215, 2010. Qualis: A1
2.	Anantharaman, Vivek ; Abhiman, Saraswathi ; De Souza, Robson F. ; Aravind, L.. Comparative genomics uncovers novel structural and functional features of the heterotrimeric GTPase signaling system. Gene (Amsterdam). v. 475, p. 63-78, 2010. Qualis: A4
3.	Aravind, L ; De Souza, Robson F ; Iyer, Lakshminarayan M. Predicted class-I aminoacyl tRNA synthetase-like proteins in non-ribosomal peptide synthesis. Biology Direct. v. 5, p. 48, 2010. Qualis: Não identificado (BIOLOGY DIRECT)
4.	Arcuri, Silvia M. ; Amaro, Edson ; Bromme, Matthew R. ; Vieira, G. ; Sato, João R. ; Brammer, M. J. ; Williams, Steve S.C. ; Sameshima, K. ; Baccalá, Luiz ; Morris, Robin G.. FUNCTIONAL DISCONNECTIVITY AND FORMAL THOUGHT DISORDER IN SCHIZOPHRENIA: INTEGRATING CLINICAL, NEUROPSYCHOLOGICAL, NEUROIMAGING AND FUNCTIONAL CONNECTIVTY DATA. Schizophrenia Research (Print). v. 117, p. 232-233, 2010. Qualis: A1
5.	BALAJI, P. ; FENG, W. ; LIN, H. ; ARCHULETA, J. ; MATSUOKA, S. ; Warren, A. ; Setubal, J. ; Lusk, Ewing ; Thakur, R. ; Foster, I. ; Katz, D. S. ; Jha, S. ; Shinpaugh, K. ; Coghlan, S. ; Reed, D.. Global-scale distributed I/O with ParaMEDIC. Concurrency and Computation. v. 22, p. 2266-2281, 2010. Qualis: Não identificado (CONCURRENCY AND COMPUTATION)
6.	Baratti, Mariana O ; Moreira, Yuri B ; Traina, Fabiola ; Costa, Fernando F ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Olalla-Saad, Sara T. Identification of protein-coding and non-coding RNA expression profiles in CD34+ and in stromal cells in refractory anemia with ringed sideroblasts. BMC Medical Genomics. v. 3, p. 30, 2010. Qualis: A3
7.	Bare, J.C. ; KOIDE, T. ; Reiss, D.J. ; Tenembaum, D. ; Baliga, N.S.. Integration and visualization of systems biology data in context of the genome. BMC Bioinformatics. v. 11, p. 382, 2010. Qualis: A1
8.	BARROS FILHO, M.C. ; KATAYAMA, M.L.H. ; BRENTANI, H. ; ABREU, A.P.S. ; BARBOSA, E.M. ; OLIVEIRA, C.T. ; GÓES, J.C.S. ; BRENTANI, M.M. ; FOLGUEIRA, M.A.A.K.. Gene trio signatures as molecular markers to predict response to doxorubicin cyclophosphamide neoadjuvant chemotherapy in breast cancerpatients. Brazilian journal of medical and biological research. v. 43, p. 1225-1231, 2010. Qualis: A4
9.	Biase, Fernando Henrique ; Martelli, Lúcia ; Puga, Renato ; Giuliatti, Silvana ; Santos-Biase, Weruska Karyna Freitas ; Fonseca Merighe, Giovana Krempel ; Meirelles, Flavio Vieira. Messenger RNA expression of Pabpnl1 and Mbd3l2 genes in oocytes and cleavage embryos. Fertility and Sterility. v. 93, p. 2507-2512, 2010. Qualis: A1
10.	BOCCARDO, E. ; Manzini Baldi, C. V. ; CARVALHO, A. F. ; RABACHINI, T. ; Torres, C. ; BARRETA, L. A. ; BRENTANI, H. ; VILLA, L. L.. Expression of human papillomavirus type 16 E7 oncoprotein alters keratinocytes expression profile in response to tumor necrosis factor- . Carcinogenesis (New York. Print). v. 31, p. 521-531, 2010. Qualis: Não identificado (PRINT))
11.	BUCKERIDGE, M. S. Seed Cell Wall Storage Polysaccharides: models to understand cell wall biosynthesis and degradation. Plant Physiology (Bethesda),. p. 1-7, 2010. Qualis: A1 (PLANT PHYSIOLOGY)
12.	BUCKERIDGE, M. S.; GONCALVES, J. F. C. ; LIM, R.B.S. ; FERNANDES, A. V. ; Borges, E.E.L.B.. Physiological and biochemical characterization of the assai palm (Euterpe oleracea Mart.) during seed germination and seedling growth under aerobic and anaerobic conditions. Revista Árvore (Impresso). v. 34, p. 1045-4053, 2010. Qualis: B2
13.	CARDOSO, K. C. ; SILVA, M. J. ; COSTA, G. G. L. ; TORRES, T. T. ; DEL BEM, L. E. V. ; VIDAL, R. O. ; MENOSSI, M. ; HYSLOP, S.. A transcriptomic analysis of gene expression in the venom gland of the snake Bothrops alternatus (urutu). BMC Genomics. v. 11, p. 605, 2010. Qualis: A2
14.	CARNEIRO-PROIETTI, A. B. ; SABINO, E. C. ; Sampaio, Divaldo ; Proietti, Fernando A. ; GONCALVES, T. T. ; OLIVEIRA, C. D. L. ; FERREIRA, J. E. ; Liu, Jing ; Schreiber, George B. ; Murphy, Edward L. ; BUSCH, M. P.. Demographic profile of blood donors at three major Brazilian blood centers: results from the International REDS-II study, 2007 to 2008. TRANSFUSION (ONLINE). v. 50, p. 918-925, 2010. Qualis: A3
15.	CARVALHO, R.A. ; AZEREDO-ESPIN, A.M.L. ; TORRES, T.T.. Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance. BMC GENOMICS. v. 11, p. 695, 2010. Qualis: A2
16.	Cordenunsi, Beatriz ; Saura-Calixto, Fulgêncio ; Diaz-Rubio, Maria Elena ; Zuleta, Angela ; Tiné, Marco Aurélio ; Buckeridge, Marcos Silveira ; BUCKERIDGE, M. S. ; Silva, Giovanna Bezerra da ; Carpio, Cecilia ; Giuntini, Eliana Bistriche ; Menezes, Elizabete Wenzel de ; Lajolo, Franco. Carbohydrate composition of ripe pineapple (cv. perola) and the glycemic response in humans. Ciência e Tecnologia de Alimentos (Impresso). v. 30, p. 282-288, 2010. Qualis: B1 (CIENCIA E TECNOLOGIA DE ALIMENTOS)
17.	da Silva Neto, Jose F ; Koide, Tie ; Gomes, Suely L ; Marques, Marilis V. Global gene expression under nitrogen starvation in Xylella fastidiosa: contribution of the sigma54 regulon. BMC Microbiology (Online). v. 10, p. 231, 2010. Qualis: A2
18.	DaMatta, Fábio M. ; Grandis, Adriana ; Arenque, Bruna C. ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S.. Impacts of climate changes on crop physiology and food quality. Food Research International. v. 43, p. 1814-1823, 2010. Qualis: A1
19.	de Souza, R. F.; Aravind, L.. UMA and MABP domains throw light on receptor endocytosis and selection of endosomal cargoes. Bioinformatics (Oxford). v. 26, p. 1477-1480, 2010. Qualis: A1
20.	De Souza, Robson F.; Iyer, Lakshminarayan M. ; Aravind, L.. Diversity and evolution of chromatin proteins encoded by DNA viruses. BBA-GENE REGUL MECH. v. 1799, p. 302-318, 2010. Qualis: Não identificado (BBA-GENE REGUL MECH)
21.	DEMARCO, R. ; Mathieson, W. ; Manuel, S. J. ; Dillon, G. P. ; Curwen, R. S. ; Ashton, P. D. ; Ivens, A. C. ; Berriman, M. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Wilson, R. A.. Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts. Genome Research. v. 20, p. 1112-1121, 2010. Qualis: A1
22.	DENTILLO, D. B. ; Meola, J. ; Rosa e Silva, J. C. ; GIULIATTI, S. ; SILVA, W. A. ; FERRIANI, R. A. ; Martelli, L. ; MARTELLI, L.. Deregulation of LOXL1 and HTRA1 Gene Expression in Endometriosis. Reproductive Sciences (Thousand Oaks, Calif.). v. 17, p. 1016-1023, 2010. Qualis: A2
23.	Facciotti, Marc T ; Pang, Wyming L ; Lo, Fang-yin ; Whitehead, Kenia ; KOIDE, T. ; Masumura, Ken-ichi ; Pan, Min ; Kaur, Amardeep ; Larsen, David J ; Reiss, David J ; Hoang, Linh ; Kalisiak, Ewa ; Northen, Trent ; Trauger, Sunia A ; Siuzdak, Gary ; Baliga, Nitin S. Large scale physiological readjustment during growth enables rapid, comprehensive and inexpensive systems analysis. BMC Systems Biology. v. 4, p. 64, 2010. Qualis: A1
24.	Ferreira, Elisa N. ; Maschietto, Mariana ; Silva, Sabrina D. ; BRENTANI, HELENA ; Carraro, Dirce M.. Evaluation of Quantitative RT-PCR Using Nonamplified and Amplified RNA. Diagnostic Molecular Pathology (Print). v. 19, p. 45-53, 2010. Qualis: Não identificado (DIAGNOSTIC MOLECULAR PATHOLOGY)
25.	Fogaça, Andréa C. ; ZAINI, Paulo A. ; Wulff, Nelson A. ; da Silva, Patrícia I.P. ; Fázio, Marcos A. ; Miranda, Antônio ; Daffre, Sirlei ; da Silva, Aline M.. Effects of the antimicrobial peptide gomesin on the global gene expression profile, virulence and biofilm formation of. FEMS Microbiology Letters. v. 306, p. 152-159, 2010. Qualis: B2
26.	Frederigue-Lopes, N. B. ; Bevilacqua, M. C. ; Sameshima, Koichi ; Costa Filho, O. A.. Desempenho de crianças normais em testes temporais auditivos em campo livre. Pró-Fono (Impresso). v. 22, p. 83-88, 2010. Qualis: Não identificado (PRÓ-FONO)
27.	Freschi, L. ; Rodrigues, M. A. ; Domingues, D. S. ; Purgatto, E. ; Van Sluys, M. A. ; Magalhaes, J. R. ; Kaiser, W. M. ; Mercier, H.. Nitric Oxide Mediates the Hormonal Control of Crassulacean Acid Metabolism Expression in Young Pineapple Plants. Plant Physiology (Bethesda). v. 152, p. 1971-1985, 2010. Qualis: A1
28.	Gomes, Verônica Souza da Mota ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S. ; Silva, Clóvis Oliveira ; Scarano, Fábio Rubio ; Araujo, Dorothy Sue Dunn ; Alves, Maria Alice S.. Availability peak of caloric fruits coincides with energy-demanding seasons for resident and non-breeding birds in restinga, an ecosystem related to the Atlantic forest, Brazil. Flora (Jena). v. 205, p. 647-655, 2010. Qualis: A3
29.	Grandis, Adriana ; Godoi, Simone ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S.. Respostas fisiológicas de plantas amazônicas de regiões alagadas às mudanças climáticas globais. Brazilian Journal of Botany. v. 33, p. 1-12, 2010. Qualis: B1
30.	Guimaraes, A.M.S.; Brandão, P.E. ; MORAES, W. ; Kiihl, S. ; Santos, L.C. ; FILONI, C. ; Cubas, Z.S. ; Robes, R.R. ; Marques, L.M. ; Neto, R.L.. Detection of Bartonella spp. in neotropical felids and evaluation of risk factors and hematological abnormalities associated with infection. Veterinary Microbiology (Amsterdam. Print). v. 142, p. 346-351, 2010. Qualis: Não identificado (PRINT))
31.	Harwich, Michael D ; Alves, Joao M ; Buck, Gregory A ; Strauss, Jerome F ; Patterson, Jennifer L ; Oki, Aminat T ; Girerd, Philippe H ; Jefferson, Kimberly K. Drawing the line between commensal and pathogenic Gardnerella vaginalis through genome analysis and virulence studies. BMC Genomics. v. 11, p. 375-387, 2010. Qualis: A2
32.	Hotta, Carlos T. ; Lembke, Carolina G. ; Domingues, Douglas S. ; Ochoa, Edgar A. ; Cruz, Guilherme M. Q. ; Melotto-Passarin, Danila M. ; Marconi, Thiago G. ; Santos, Melissa O. ; Mollinari, Marcelo ; Margarido, Gabriel R. A. ; Crivellari, Augusto César ; Santos, Wanderley D. ; Souza, Amanda P. ; Hoshino, Andrea A. ; Carrer, Helaine ; Souza, Anete P. ; Garcia, Antônio A. F. ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S. ; Menossi, Marcelo ; Sluys, Marie-Anne ; et.al. The Biotechnology Roadmap for Sugarcane Improvement. Tropical Plant Biology (Online). v. 3, p. 75-87, 2010. Qualis: A3
33.	HÜNEMEIER, T.; ACUNA-ALONZO, V. ; SALZANO, F. M. ; BORTOLINI, M. C. ; CANIZALES-QUINTEROS, S.. A functional ABCA1 gene variant is associated with low HDL-cholesterol levels and shows evidence of positive selection in Native Americans. Human Molecular Genetics (Print). v. 19, p. 2877-2885, 2010. Qualis: A1
34.	HÜNEMEIER, T.; Ruiz-Linares, Andres ; Silveira, Álvaro ; Paixão-Côrtes, Vanessa Rodrigues ; Salzano, Francisco M. ; Bortolini, Maria Cátira. Brief communication: Population data support the adaptive nature of HACNS1 sapiens/neandertal-chimpanzee differences in a limb expression domain. American Journal of Physical Anthropology,. p. n/a-n/a, 2010. Qualis: A2 (AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY)
35.	Iyer, L. M. ; Abhiman, S. ; de Souza, R. F. ; Aravind, L.. Origin and evolution of peptide-modifying dioxygenases and identification of the wybutosine hydroxylase/hydroperoxidase. Nucleic Acids Research,. p. gkq265, 2010. Qualis: A1 (NUCLEIC ACIDS RESEARCH)
36.	Kamenetzky, L. ; Asis, R. ; Bassi, S. ; de Godoy, F. ; Bermudez, L. ; Fernie, A. R. ; Van Sluys, M. A. ; Vrebalov, J. ; Giovannoni, J. J. ; ROSSI, M. ; Carrari, F.. Genomic Analysis of Wild Tomato Introgressions Determining Metabolism- and Yield-Associated Traits. Plant Physiology (Bethesda). v. 152, p. 1772-1786, 2010. Qualis: A1
37.	Lang, Jillian M. ; Hamilton, John P. ; Diaz, Maria Genaleen Q. ; Van Sluys, Marie Anne ; Burgos, Ma. Ruby G. ; Vera Cruz, Casiana M. ; Buell, C. Robin ; Tisserat, Ned A. ; Leach, Jan E.. Genomics-Based Diagnostic Marker Development for pv. and pv.. Plant Disease. v. 94, p. 311-319, 2010. Qualis: A2
38.	MACHADO, B.S. ; MIRANDA, T.B. ; Morya, E. ; AMARO, E. ; Sameshima, K.. P24-23 Algorithmic complexity measure of EEG for staging brain state. Clinical Neurophysiology. v. 121, p. S249-S250, 2010. Qualis: A2
39.	MACHADO-LIMA, A. ; KASHIWABARA, A. Y. ; DURHAM, A. M.. Decreasing the number of false positives in sequence classification. BMC GENOMICS. v. 11, p. S7, 2010. Qualis: A2
40.	Manicassamy, S. ; Reizis, B. ; Ravindran, R. ; Nakaya, H. ; Salazar-Gonzalez, R. M. ; Wang, Y.-c. ; Pulendran, B.. Activation of -Catenin in Dendritic Cells Regulates Immunity Versus Tolerance in the Intestine. Science (New York, N.Y.). v. 329, p. 849-853, 2010. Qualis: A1
41.	Marques, Lucas ; Ueno, Priscilla M ; Buzinhani, Melissa ; Cortez, Beatriz A ; Neto, Renata L ; Yamaguti, Maurício ; Oliveira, Rosângela C ; GUIMARAES, A. M. S. ; Monezi, Telma A ; Braga, Antonio ; Machado-Santelli, Gláucia M ; Timenetsky, Jorge. Invasion of Ureaplasma diversum in Hep-2 cells. BMC Microbiology (Online). v. 10, p. 83, 2010. Qualis: A2
42.	Matos, G. ; Tsai, R. ; Baldo, M. V. C. ; Castro, I. ; Sameshima, K ; Valle, A. C.. The sleep?wake cycle in adult rats following pilocarpine-induced temporal lobe epilepsy. Epilepsy & Behavior. v. 17, p. 324-331, 2010. Qualis: A3
43.	Meola, Juliana ; Rosa e Silva, Júlio César ; Dentillo, Daniel Blassioli ; da Silva, Wilson Araújo ; Veiga-Castelli, Luciana Caricati ; de Souza Bernardes, Luciano Angelo ; Ferriani, Rui Alberto ; de Paz, Claudia Cristina Paro ; Giuliatti, Silvana ; Martelli, Lúcia. Differentially expressed genes in eutopic and ectopic endometrium of women with endometriosis. Fertility and Sterility. v. 93, p. 1750-1773, 2010. Qualis: A1
44.	Moreira, Leandro M ; Almeida, Nalvo F ; Potnis, Neha ; DIGIAMPIETRI, L. A. ; Adi, Said S ; Bortolossi, Julio C ; da Silva, Ana C ; da Silva, Aline M ; de Moraes, Fabricio E ; de Oliveira, Julio C ; de SOUZA, Robson Francisco ; Fancincani, Agda P ; Ferraz, Andre L ; Ferro, Maria I ; Furlan, Luiz R ; Gimenez, Daniele F ; Jones, Jeffrey B ; Kitajima, Elliot W ; Laia, Marcelo L ; Leite, Rui P ; et.al. Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC GENOMICS. v. 11, p. 238, 2010. Qualis: A2
45.	Moreira, Leandro M ; de Laia, Marcelo L ; De Souza, Robson F ; Zaini, Paulo A ; da Silva, Ana CR ; da Silva, Aline M ; Ferro, Jesus A. Development and validation of a Xanthomonas axonopodis pv. citri DNA microarray platform (XACarray) generated from the shotgun libraries previously used in the sequencing of this bacterial genome. BMC Research Notes. v. 3, p. 150, 2010. Qualis: B1
46.	OIKAWA, M. K. ; MERINO, E. F. ; FERNANDEZ-BECERRA, C. ; WUNDERLICH, G. ; VILLALOBOS, J. M. ; SILVA, P. P. S. B. ; BARRERA, J. ; DURHAM, A. M. ; DELPORTILLO, H. A. ; FERREIRA, J. E.. CLINMALDB: A Clinical Field-Research Oriented Relational Database to Study Human Malaria. IADIS International Journal on WWWInternet. v. 8, p. 181-191, 2010.Qualis: C (IADIS INTERNATIONAL JOURNAL ON WWW/INTERNET)
47.	Oliveira Júnior, Clóvis J. F. ; Cavalari, Aline A. ; Carpita, Nicholas C. ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S. ; Braga, Marcia R.. Cell wall polysaccharides from cell suspension cultures of the Atlantic Forest tree Rudgea jasminoides (Rubiaceae). Trees (Berlin. Print). v. 24, p. 713-722, 2010. Qualis: Não identificado (PRINT))
48.	OLIVEIRA, LARIZA L. DE ; PERSINOTI, GABRIELA F. ; Giuliatti, Silvana ; TINÓS, RENATO. Feature Selection via Genetic Algorithms in the Classification of Anti-Snake Venom Medicinal Plants. LEARNING AND NONLINEAR MODELS. v. 8, p. 125-134, 2010. Qualis: B2
49.	Oliveira, S.T. ; MESSICK, J. B. ; BIONDO, A. W. ; Santos, A.P. ; GUIMARAES, A. M. S. ; MOHAMED, A. ; Pires Neto, J.A.S. ; Dalmonin, M.L. ; GONZALEZ, F. H. D.. Serum and Urinary C-Reactive Protein Concentrations in Dogs with Leptospirosis. Acta Scientiae Veterinariae (Online). v. 38, p. 243-247, 2010.Qualis: B1
50.	Pulendran, Bali ; Li, Shuzhao ; Nakaya, Helder I.. Systems Vaccinology. Immunity (Cambridge, Mass.). v. 33, p. 516-529, 2010. Qualis: A1
51.	ROZENCHAN, P. B. ; CARRARO, D. M. ; BRENTANI, H. P. ; MOTA, L. D. ; BASTOS, E. P. ; FERREIRA, E. N. E. ; TORRES, C. H. ; KATAYAMA, M. L. H. ; ROELA, R. A. ; LYRA, E. C. ; SOARES, F. A. ; FOLGUEIRA, M. A. A. K. ; GOES, J. C. G. S. ; BRENTANI, M. M.. Reciprocal changes in gene expression profiles of cocultured breast epithelial cells and primary fibroblasts. International Journal of Cancer (Print). v. 125, p. 2767-2777, 2010. Qualis: A1
52.	Sebollela, Adriano ; Freitas-Corrêa, Léo ; Oliveira, Fábio F. ; Mendes, Camila T. ; Wasilewska-Sampaio, Ana Paula ; Camacho-Pereira, Juliana ; Galina, Antonio ; BRENTANI, HELENA ; Passetti, Fabio ; Felice, Fernanda G. ; Dias-Neto, Emmanuel ; Ferreira, Sérgio T.. Expression Profile of Rat Hippocampal Neurons Treated with the Neuroprotective Compound 2,4-Dinitrophenol: Up-Regulation of cAMP Signaling Genes. Neurotoxicity Research. v. 18, p. 112-123, 2010. Qualis: A3
53.	Shulaev, Vladimir ; Sargent, Daniel J ; Crowhurst, Ross N ; Mockler, Todd C ; Folkerts, Otto ; Delcher, Arthur L ; Jaiswal, Pankaj ; Mockaitis, Keithanne ; Liston, Aaron ; Mane, Shrinivasrao P ; Burns, Paul ; Davis, Thomas M ; Slovin, Janet P ; Bassil, Nahla ; Hellens, Roger P ; Evans, Clive ; Harkins, Tim ; Kodira, Chinnappa ; Desany, Brian ; SETUBAL, J. C. ; et.al. The genome of woodland strawberry (Fragaria vesca). Nature Genetics (Print). v. 43, p. 109-116, 2010. Qualis: A1
54.	Simões, C. S. ; Vianney, P. V. R. ; Moura, M. M. ; Freire, M. A.M. ; Mello, L. E. ; Araújo, J. F. ; Sameshima, Koichi ; Mello, C. V. ; Ribeiro, S.. Activation of frontal neocortical areas by vocal production in marmosets. Frontiers in Integrative Neuroscience. v. 4, p. 1-12, 2010. Qualis: A2
55.	Soccol, Carlos Ricardo ; Vandenberghe, Luciana Porto de Souza ; Medeiros, Adriane Bianchi Pedroni ; Karp, Susan Grace ; Buckeridge, Marcos ; BUCKERIDGE, M. S. ; Ramos, Luiz Pereira ; Pitarelo, Ana Paula ; Ferreira-Leitão, Viridiana ; Gottschalk, Leda Maria Fortes ; Ferrara, Maria Antonieta. Bioethanol from lignocelluloses: Status and perspectives in Brazil. Bioresource Technology. v. 101, p. 4820-4825, 2010. Qualis: A1
56.	SOLER, J. M. P.; Giolo, S.R. ; PEREIRA, A. C. ; de Andrade, M. ; KRIEGER, J. E.. Evaluating gene by sex and age interactions on cardiovascular risk factors in Brazilian families. BMC Medical Genetics (Online). v. 11, p. 132, 2010. Qualis: A4
57.	Souza, Beatriz M. ; Molfetta-Machado, Jeanne B. ; Freschi, Luciano ; Figueira, Antonio ; Purgatto, Eduardo ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S. ; Sluys, Marie-Anne ; Mercier, Helenice. Axillary bud development in pineapple nodal segments correlates with changes on cell cycle gene expression, hormone level, and sucrose and glutamate contents. In Vitro Cellular & Developmental Biology. Plant. v. 46, p. 281-288, 2010. Qualis: C
58.	Takahashi, D. Y. ; Baccalá, L. A. ; Sameshima, Koichi. Information theoretic interpretation of frequency domain connectivity measures. Biological Cybernetics. v. 103, p. 463-469, 2010. Qualis: A2
59.	Tang, Hua ; Cao, Weiping ; Kasturi, Sudhir Pai ; Ravindran, Rajesh ; Nakaya, Helder I ; Kundu, Kousik ; Murthy, Niren ; Kepler, Thomas B ; Malissen, Bernard ; Pulendran, Bali. The T helper type 2 response to cysteine proteases requires dendritic cell¿basophil cooperation via ROS-mediated signaling. Nature Immunology. v. 11, p. 608-617, 2010. Qualis: A1
60.	Tiller, R. V. ; Gee, J. E. ; Frace, M. A. ; Taylor, T. K. ; SETUBAL, J. C. ; Hoffmaster, A. R. ; De, B. K.. Characterization of novel Brucella strains originating from wild native rodent species in North Queensland, Australia. Applied and Environmental Microbiology (Print). v. 76, p. 5837-5845, 2010. Qualis: A1
61.	TONINI, P. P. ; Purgatto, E. ; BUCKERIDGE, M. S.. Effects of abscisic acid, ethylene and sugars on the mobilization of storage proteins and carbohydrates in seeds of the tropical tree Sesbania virgata (Leguminosae). Annals of Botany (Print). v. 106, p. 607-616, 2010. Qualis: A1
62.	Tonini, Patricia P. ; Carrara, Thalita B. ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S.. Storage proteins and cell wall mobilisation in seeds of Sesbania virgata (Cav.) Pers. (Leguminosae). Trees (Berlin. Print). v. 24, p. 675-684, 2010. Qualis: Não identificado (PRINT))
63.	TORTO-ALALIBO, T. ; Collmer, C. W. ; GWINN-GIGLIO, M. ; Lindeberg, M. ; Meng, S. ; Chibucos, M. C. ; Tseng, T.-T. ; Lomax, J. ; Biehl, B. ; Ireland, A. ; Bird, D. ; Dean, R. A. ; Glasner, J. D. ; PERNA, N. ; SETUBAL, J. C. ; COLLMER, A. ; Tyler, B. M.. Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology. Microbiology and Molecular Biology Reviews. v. 74, p. 479-503, 2010. Qualis: Não identificado (MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS)
64.	Ullmann, Leila Sabrina ; da Silva, Rodrigo Costa ; de Moraes, Wanderlei ; Cubas, Zalmir Silvino ; dos Santos, Leonilda Correia ; Hoffmann, Juliano Leônidas ; Moreira, Nei ; Guimaraes, Ana Marcia Sa ; Montaño, Patrícia ; Langoni, Helio. Serological survey of Toxoplasma gondii in captive Neotropical felids from Southern Brazil. Veterinary Parasitology (Print). v. 172, p. 144-146, 2010. Qualis: A1
65.	Venancio, Thiago M. ; Wilson, R. Alan ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; DEMARCO, Ricardo. Bursts of transposition from non-long terminal repeat retrotransposon families of the RTE clade in Schistosoma mansoni. International Journal for Parasitology. v. 40, p. 743-749, 2010. Qualis: A1
66.	VIBRANOVSKI, M. D.; CHALOPIN, D.S. ; LOPES, H. F. ; LONG, M. ; KARR, T. L.. Direct Evidence for Postmeiotic Transcription During Drosophila melanogaster Spermatogenesis. Genetics (Austin, Tex.). v. 186, p. 431-433, 2010. Qualis: A2
67.	Wang, Jianping ; Roe, Bruce ; Macmil, Simone ; Yu, Qingyi ; Murray, Jan ; Tang, Haibao ; Chen, Cuixia ; Najar, Fares ; Wiley, Graham ; Bowers, John ; Van Sluys, Marie-Anne ; Rokhsar, Daniel S ; Hudson, Matthew E ; Moose, Stephen P ; Paterson, Andrew H ; Ming, Ray. Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes. BMC Genomics. v. 11, p. 261, 2010. Qualis: A2
68.	Warren, Andrew S ; Archuleta, Jeremy ; Feng, Wu-chun ; Setubal, Joao Carlos. Missing genes in the annotation of prokaryotic genomes. BMC BIOINFORMATICS. v. 11, p. 131, 2010. Qualis: A1
69.	ZHANG, Y. E. ; VIBRANOVSKI, M. D. ; KRINSKY, B. H. ; LONG, M.. Age-dependent chromosomal distribution of male-biased genes in Drosophila. Genome Research. v. 20, p. 1526-1533, 2010. Qualis: A1
70.	ZHANG, YONG E. ; VIBRANOVSKI, MARIA D. ; LANDBACK, PATRICK ; MARAIS, GABRIEL A. B. ; LONG, MANYUAN. Chromosomal Redistribution of Male-Biased Genes in Mammalian Evolution with Two Bursts of Gene Gain on the X Chromosome. PLoS Biology (Online). v. 8, p. e1000494, 2010. Qualis: A1

2009

1.	ALMEIDA, F. M. ; BONINI, B. M. ; BETON, Daniela ; Jorge, J.A. ; TERENZI, H. F. ; DA SILVA, A. M.. Heterologous expression in Escherichia coli of Neurospora crassa neutral trehalase as an active enzyme. Protein Expression and Purification. v. 65, p. 185-189, 2009. Qualis: B2
2.	Almeida, Nalvo F. ; Yan, Shuangchun ; Lindeberg, Magdalen ; Studholme, David J. ; Schneider, David J. ; Condon, Bradford ; Liu, Haijie ; Viana, Carlos J. ; Warren, Andrew ; Evans, Clive ; Kemen, Eric ; MacLean, Dan ; Angot, Aurelie ; Martin, Gregory B. ; Jones, Jonathan D. ; Collmer, Alan ; Setubal, Joao C. ; Vinatzer, Boris A.. A Draft Genome Sequence of Pseudomonas syringae pv. tomato T1 Reveals a Type III Effector Repertoire Significantly Divergent from That of Pseudomonas syringae pv. tomato DC3000. Molecular Plant-Microbe Interactions. v. 22, p. 52-62, 2009. Qualis: A1
3.	AMARAL, L. I. V. ; Cortelazzo, Ângelo L. ; CORTELAZZO, A. L. ; BUCKERIDGE, M. S. ; PEREIRA, L. A. R.. Anatomical and biochemical changes in the composition of developing seed coats of annatto (Bixa orellana L.). Trees (Berlin). v. 23, p. 287-293, 2009. Qualis: A2
4.	ANEAS, I. ; Rodrigues, MV ; Pauletti, BA ; Silva, GJJ ; Carmona, R ; Cardoso, L ; Kwitek, AE ; Jacob, HJ ; SOLER, J. M. P. ; KRIEGER, J. E.. Congenic strains provide evidence that four mapped loci in chromosomes 2, 4, and 16 influence hypertension in the SHR. Physiological Genomics (Print). v. 3, p. 52-57, 2009.Qualis: A3
5.	Arashiro, P. ; Eisenberg, I. ; Kho, A. T. ; Cerqueira, A. M. P. ; Canovas, M. ; Silva, H. C. A. ; Pavanello, R. C. M. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Kunkel, L. M. ; ZATZ, M.. Transcriptional regulation differs in affected facioscapulohumeral muscular dystrophy patients compared to asymptomatic related carriers. PNAS. Proceedings of the National Academy of Sciences of the United States of America. v. 106, p. 6220-6225, 2009. Qualis: A1
6.	BETTONI, F. ; CAMARGO FILHO, F. ; GROSSO, D. M. ; GALANTE, P. A. F. ; PARMIGIANI, R. B. ; GERALDO, M. V. ; SILVA, F. H. ; OBA-SHINJO, S. M. ; MARIE, S. K. M. ; SOARES, F. A. ; BRENTANI, H. P. ; SIMPSON, A. J. G. ; DE SOUZA, S. J. ; CAMARGO, A. A.. Identification of FAM46D as a novel cancer/testis antigen using EST data and serological analysis. Genomics (San Diego). v. 94, p. 153-160, 2009. Qualis: A3
7.	BIONDO, A. W. ; Santos, A.P. ; GUIMARAES, A. M. S. ; VIEIRA, R. F. C. ; VIDOTTO, O. ; MACIEIRA, D. ; Almosny, N.R.P. ; Molento, Marcelo B. ; TIMENETSKY, J. ; de Morais, H. A. ; GONZALEZ, F. H. D. ; MESSICK, J. B.. A review of the occurrence of hemoplasmas (hemotrophic mycoplasmas) in Brazil.. Revista Brasileira de Parasitologia Veterinária. v. 18, p. 1-7, 2009.Qualis: A2
8.	BITARELLO, B.D. ; TORRES, T.T. ; LYRA, M.L. ; AZEREDO-ESPIN, A.M.L.. Development of polymorphic microsatellite markers for the human botfly, Dermatobia hominis (Diptera: Oestridae). Molecular Ecology Resources (Online). v. 9, p. 409-411, 2009. Qualis: A1
9.	CALMON, M. F. ; RODRIGUES, R. V. ; KANETO, C. M. ; MOURA, R. P. ; SILVA, S. D. ; MOTA, L. D. C. ; PINHEIRO, D. G. ; TORRES, C. H. ; CARVALHO, A. F. ; CURY, P. M. ; NUNES, F. D. ; NISHIMOTO, I. N. ; SOARES, F. A. ; SILVA, A. M. ; KOWALSKI, L. P. ; BRENTANI, H. ; ZANELLI, C. ; SILVA, W. A. ; RAHAL, P. ; TAJARA, H. H. ; et.al. Epigenetic silencing of CRABP2 and MX1 in head and neck tumors. Neoplasia (New York, N.Y.). v. 11, p. 1329-1339, 2009. Qualis: A2
10.	CARVALHO, R.A. ; TORRES, T. T. ; PANIAGO, M.D.G. ; AZEREDO-ESPIN, A.M.L.. Molecular characterization of esterase E3 gene associated with organophosphorus insecticide resistance in the New World screwworm fly,. Medical and Veterinary Entomology. v. 23, p. 86-91, 2009. Qualis: A2
11.	Castelli, Erick C. ; Moreau, Philippe ; Chiromatzo, Alynne Oya e ; Mendes-Junior, Celso Teixeira ; Veiga-Castelli, Luciana C. ; Yaghi, Layale ; Giuliatti, Silvana ; Carosella, Edgardo D. ; Donadi, Eduardo Antonio. In silico analysis of microRNAS targeting the HLA-G 3⿲ untranslated region alleles and haplotypes. Human Immunology. v. 70, p. 1020-1025, 2009. Qualis: B1
12.	Chibucos, Marcus C. ; Tseng, Tsai-Tien ; Setubal, João C.. Describing commonalities in microbial effector delivery using the Gene Ontology. Trends in Microbiology. v. 17, p. 312-319, 2009. Qualis: A1
13.	Corrêa Soares, Juliana B. R. ; Menezes, Diego ; Vannier-Santos, Marcos A. ; Ferreira-Pereira, Antonio ; Almeida, Giulliana T. ; Venancio, Thiago M. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Zishiri, Vincent K. ; Kuter, David ; Hunter, Roger ; Egan, Timothy J. ; Oliveira, Marcus F.. Interference with Hemozoin Formation Represents an Important Mechanism of Schistosomicidal Action of Antimalarial Quinoline Methanols. Plos Neglected Tropical Diseases. v. 3, p. e477, 2009. Qualis: A1
14.	da Cunha, J. P. C. ; Old, L. J. ; Caballero, O. ; de SOUZA, Robson Francisco ; de Souza, J. E. ; de Souza, S. J. ; Ohara, D. T. ; Gama-Rodrigues, J. ; Oba-Shinja, S. M. ; Galante, P. A. F. ; Stransky, B. ; Simpson, A. J. ; Carvalho, P. M. ; SILVA, W. A. ; Moura, R. P. ; Moore, J. ; marie sk ; MARIE, S. K. N. ; Habr-Gama, A. ; Pieprzyk, M. ; et.al. Bioinformatics construction of the human cell surfaceome. Proceedings of the National Academy of Sciences of the United States of America (Online). v. 106, p. 16752-16757, 2009. Qualis: A1
15.	de Setta, Nathalia ; Van Sluys, Marie-Anne ; Capy, Pierre ; Carareto, Claudia MA. Multiple invasions of Gypsy and Micropia retroelements in genus Zaprionus and melanogaster subgroup of the genus Drosophila. BMC Evolutionary Biology (Online). v. 9, p. 279, 2009. Qualis: A1
16.	De Souza, Robson F; Iyer, Lakshminarayan M ; Aravind, L. The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains. Biology Direct. v. 4, p. 25, 2009. Qualis: Não identificado (BIOLOGY DIRECT)
17.	DEMARCO, Ricardo ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Schistosomes - proteomics studies for potential novel vaccines and drug targets. Drug Discovery Today. v. 14, p. 472-478, 2009. Qualis: A1
18.	DIAS-NETO, Emmanuel ; Nunes, Diana N. ; Giordano, Ricardo J. ; Sun, Jessica ; Botz, Gregory H. ; Yang, Kuan ; Setubal, João C. ; Pasqualini, Renata ; Arap, Wadih ; HO, Paulo Lee. Next-Generation Phage Display: Integrating and Comparing Available Molecular Tools to Enable Cost-Effective High-Throughput Analysis. Plos One. v. 4, p. e8338, 2009. Qualis: A1
19.	Diogo, Luciana C. ; Fernandes, Renata S. ; Marcussi, Silvana ; Menaldo, Danilo L. ; Roberto, Patrí­cia G. ; Matrangulo, Paula V. F. ; Pereira, Paulo S. ; França, Suzelei C. ; Giuliatti, Silvana ; Soares, Andreimar M. ; Lourenço, Miriam V.. Inhibition of Snake Venoms and Phospholipases A 2 by Extracts from Native and Genetically Modified Eclipta alba : Isolation of Active Coumestans. Basic & Clinical Pharmacology & Toxicology (Print). v. 104, p. 293-299, 2009. Qualis: A3
20.	DURHAM, A. M.; ARAUJO, F.M. ; MACHADO-LIMA, A. ; TEIXEIRA, R. ; OLIVEIRA, G.. Sequence and structural analysis of the 5- noncoding region of hepatitis C virus in patients with chronic infection. Journal of Medical Virology. v. 81, p. 1212-1219, 2009. Qualis: B1
21.	Dzirasa, K. ; Ramsey, A.J. ; Takahashi, D. Y. ; Stapleton, J. ; Potes, J. M. ; Williams, J.K. ; Gainetdinov, R. R. ; Sameshima, K ; Caron, M. G. ; Nicolelis, M. A. L.. Hyperdopaminergia and NMDA receptor hypofunction disrupt neural phase signaling. The Journal of Neuroscience. v. 29, p. 8215-8224, 2009. Qualis: A1
22.	Ferreira, C. d. S. ; Piedade, M. T. F. ; Tine, M. A. S. ; Rossatto, D. R. ; Parolin, P. ; BUCKERIDGE, M. S.. The role of carbohydrates in seed germination and seedling establishment of Himatanthus sucuuba, an Amazonian tree with populations adapted to flooded and non-flooded conditions. Annals of Botany (Print). v. 104, p. 1111-1119, 2009. Qualis: A1
23.	FOLGUEIRA, M. A. A. K. ; BRENTANI, H. P. ; CARRARO, D. M. ; BARROS FILHO, M. C. ; KATAYAMA, M. L. H. ; ABREU, A. P. S. ; BARBOSA, E. M. ; OLIVEIRA, C. T. ; PATRÃO, D. F. C. ; MOTA, L. D. ; MOURÃO NETO, M. ; CALDEIRA, J. R. F. ; BRENTANI, M. M.. Gene expression profile of residual breast cancer after doxorubicin and cyclophosphamide neoadjuvant chemotherapy. Oncology Reports. v. 22, p. 805-813, 2009. Qualis: A3
24.	Freschi, Luciano ; Nievola, Catarina Carvalho ; Rodrigues, Maria Aurineide ; DOMINGUES, Douglas Silva ; Van Sluys, Marie-Anne ; Mercier, Helenice. Thermoperiod affects the diurnal cycle of nitrate reductase expression and activity in pineapple plants by modulating the endogenous levels of cytokinins. Physiologia plantarum (Kobenhavn. 1948). v. 137, p. 201-212, 2009. Qualis: Não identificado (1948))
25.	Gillespie, Joseph J. ; Ammerman, Nicole C. ; Dreher-Lesnick, Sheila M. ; Rahman, M. Sayeedur ; Worley, Micah J. ; Setubal, Joao C. ; Sobral, Bruno S. ; Azad, Abdu F.. An Anomalous Type IV Secretion System in Rickettsia Is Evolutionarily Conserved. Plos One. v. 4, p. e4833, 2009. Qualis: A1
26.	GODOY, J. R. L. DE ; MARABESI, M. ; MORTARI L.C. ; AIDAR, M. P. M. ; BUCKERIDGE, M. S.. A dinâmica da floresta neotropical e as mudanças climáticas globais. Naturalia (São José do Rio Preto). v. 32, p. 53-66, 2009.Qualis: Não identificado (NATURALIA)
27.	Guerreiro-Junior, V ; HÜNEMEIER, T. ; Marrero, AR ; SALZANO, F. M. ; BORTOLINI, M. C.. Genetic signatures of parental contribution in black and white populations in Brazil. Genetics and Molecular Biology (Impresso). v. 32, p. 1-11, 2009. Qualis: A4
28.	GUIMARAES, A. M. S.; BRANDAO, P. ; MORAES, W. ; CUBAS, Z. S. ; SANTOS, L. C. ; VILLAREAL, L. Y. B. ; ROBES, R. ; COELHO, F. ; RESENDE, M. ; SANTOS, R. C. F. ; OLIVEIRA, R. C. ; YAMAGUTI, M. ; MARQUES, L. M. ; LOPES NETO, R. ; BUZINHANI, M. ; Marques R. ; MESSICK, J. B. ; BIONDO, A. W. ; TIMENETSKY, J.. Survey of feline leukemia virus and feline coronaviruses in captive neotropical wild felids from Southern Brazil. Journal of Zoo and Wildlife Medicine. v. 40, p. 360-364, 2009.Qualis: A3
29.	HÜNEMEIER, T.; SALZANO, F. M. ; BORTOLINI, M. C.. TCOF1 T / Ser variant and brachycephaly in dogs. Animal Genetics. v. 40, p. 357-358, 2009. Qualis: A1
30.	Jucimara Colombo ; Fachel, Ângela A. ; Calmon, Marilia Freitas ; Patricia M. Cury ; Érica Erina Fukuyama ; Eloiza Helena Tajara ; Jose Antonio Cordeiro ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Reis, Eduardo M. ; Paula Rahal. Gene expression profiling reveals molecular marker candidates of laryngeal squamous cell carcinoma. Oncology Reports. v. 21, p. 649-663, 2009. Qualis: A3
31.	Junta, Cristina Moraes ; Sandrin-Garcia, Paula ; Fachin-Saltoratto, Ana Lúcia ; Mello, Stephano Spanó ; Oliveira, Rene D. R. ; Rassi, Diane Meyre ; Giuliatti, Silvana ; Sakamoto-Hojo, Elza Tiemi ; Louzada-Junior, Paulo ; Donadi, Eduardo Antonio ; Passos, Geraldo A. S.. Differential gene expression of peripheral blood mononuclear cells from rheumatoid arthritis patients may discriminate immunogenetic, pathogenic and treatment features. Immunology (Oxford. Print). v. 127, p. 365-372, 2009. Qualis: Não identificado (PRINT))
32.	KOFLER, R. ; Teixeira Torres, Tatiana ; LELLEY, T. ; SCHLÖTTERER, C.. PanGEA: Identification of allele specific gene expression using the 454 technology. BMC Bioinformatics. v. 10, p. 143, 2009. Qualis: A1
33.	KOIDE, T.; Pang, W.L. ; Baliga, N.S.. The role of predictive modeling in rationally reengeneering biological systems. Nature Review, Microbiology. v. 7, p. 297-305, 2009. Qualis: A1
34.	KOIDE, T.; Reiss, D.J. ; Bare, J.C. ; Pang, W.L. ; Facciotti, M.T. ; Schmid, A.K. ; Pan, M. ; Marzolf, B. ; Van, P.T. ; LO, F. ; PRATAP, A. ; DEUTSCH, E. W. ; PETERSON, A. ; MARTIN, D. ; Baliga, N.S.. Prevalence of transcription promoters within archaeal operons and coding sequences. Molecular Systems Biology. v. 5, p. 285, 2009. Qualis: Não identificado (MOLECULAR SYSTEMS BIOLOGY)
35.	LOURO, R. ; SMIRNOVA, A. S. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Long intronic noncoding RNA transcription: Expression noise or expression choice?. Genomics (San Diego). v. 93, p. 291-298, 2009. Qualis: A3
36.	Manetti, M. E. ; ROSSI, M. ; NAKABASHI, M. ; GRANDBASTIEN, M. A. ; Sluys, Marie Anne. The Tnt1 family member Retrosol copy number and structure disclose retrotransposon diversification in different Solanum species. Molecular Genetics and Genomics. v. 281, p. 261-271, 2009. Qualis: A4
37.	MARQUES, L. M. ; BUZINHANI, M. ; Neto, R. L. ; OLIVEIRA, R. C. ; YAMAGUTI, M. ; GUIMARAES, A. M. S. ; TIMENETSKY, J.. Detection of Ureaplasma diversum in bovine semen straws for artificial insemination. Veterinary Record. v. 165, p. 572-573, 2009. Qualis: A1
38.	MELLO, B. P. ; ABRANTES, E. F. ; TORRES, C. H. ; FONSECA, R. S. ; CARRARO, D. M. ; BRENTANI, R. R. ; REIS, L. F. L. ; Brentani, Helena. No-match ORESTES explored as tumor markers. Nucleic Acids Research. v. 37, p. 2607-2617, 2009. Qualis: A1
39.	Meola, Juliana ; Dentillo, Daniel Blassioli ; Rosa e Silva, Júlio César ; Ferriani, Rui Alberto ; Veiga, Luciana Caricati ; Paro de Paz, Claudia Cristina ; Giuliatti, Silvana ; Martelli, Lúcia. Glycodelin expression in the endometrium of healthy women and in the eutopic and ectopic endometrium of women with endometriosis. Fertility and Sterility. v. 91, p. 1676-1680, 2009. Qualis: A1
40.	Oliveira, Katia C. ; Carvalho, Mariana L. P. ; Venancio, Thiago M. ; Miyasato, Patricia A. ; KAWANO, Toshie ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Identification of the Schistosoma mansoni TNF-Alpha Receptor Gene and the Effect of Human TNF-Alpha on the Parasite Gene Expression Profile. Plos Neglected Tropical Diseases. v. 3, p. e556, 2009. Qualis: A1
41.	Quiapim, A. C. ; BRITO, M. S. ; Bernardes, L. A.S. ; daSilva, I. ; MALAVAZI, I. ; DEPAOLI, H. C. ; MOLFETTA-MACHADO, J. B. ; Giuliatti, S. ; GOLDMAN, G. H. ; GOLDMAN, M. H. S.. Analysis of the Nicotiana tabacum Stigma/Style Transcriptome Reveals Gene Expression Differences between Wet and Dry Stigma Species. Plant Physiology (Bethesda). v. 149, p. 1211-1230, 2009. Qualis: A1
42.	RODRIGUES, R.A. ; AZEREDO-ESPIN, A.M.L. ; TORRES, T.T.. Microsatellite markers for population genetic studies of the blowfly Chrysomya putoria (Diptera: Calliphoridae). Memórias do Instituto Oswaldo Cruz (Impresso). v. 104, p. 1047-1050, 2009. Qualis: A2
43.	Santos, Ramon F. ; Pôssa, Marcela A. S. ; Bastos, Matheus S. ; Guedes, Paulo M. M. ; Almeida, Márcia R. ; DEMARCO, Ricardo ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Bahia, Maria T. ; Fietto, Juliana L. R.. Influence of Ecto-Nucleoside Triphosphate Diphosphohydrolase Activity on Trypanosoma cruzi Infectivity and Virulence. PLoS Neglected Tropical Diseases (Online). v. 3, p. e387, 2009. Qualis: A1
44.	Sato, J. R. ; Takahashi, D. Y. ; Arcuri, S. M. ; Sameshima, Koichi ; Morettin, P. A. ; Baccalá, L. A.. Frequency domain connectivity identification: An application of partial directed coherence in fMRI. Human Brain Mapping. v. 30, p. 452-461, 2009. Qualis: A1
45.	Schmid, A.K. ; Reiss, D.J. ; Pan, M. ; KOIDE, T. ; Baliga, N.S.. A single transcription factor regulates evolutionarily diverse but functionally linked metabolic pathways in response to nutrient availability. Molecular Systems Biology. v. 5, p. 282, 2009. Qualis: Não identificado (MOLECULAR SYSTEMS BIOLOGY)
46.	Secco, Mariane ; Moreira, Yuri B. ; Zucconi, Eder ; Vieira, Natassia M. ; Jazedje, Tatiana ; Muotri, Alysson R. ; Okamoto, Oswaldo K. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Zatz, Mayana. Gene Expression Profile of Mesenchymal Stem Cells from Paired Umbilical Cord Units: Cord is Different from Blood. Stem Cell Reviews. v. 5, p. 387-401, 2009. Qualis: A3
47.	SETUBAL, J. C.; dos Santos, P. ; Goldman, B. S. ; Ertesvag, H. ; Espin, G. ; Rubio, L. M. ; Valla, S. ; Almeida, N. F. ; Balasubramanian, D. ; Cromes, L. ; Curatti, L. ; Du, Z. ; Godsy, E. ; GOODNER, B. ; Hellner-Burris, K. ; Hernandez, J. A. ; Houmiel, K. ; Imperial, J. ; Kennedy, C. ; Larson, T. J. ; et.al. Genome Sequence of Azotobacter vinelandii, an Obligate Aerobe Specialized To Support Diverse Anaerobic Metabolic Processes. Journal of Bacteriology (Print). v. 191, p. 4534-4545, 2009. Qualis: A3
48.	Slater, S. C. ; Goldman, B. S. ; GOODNER, B. ; SETUBAL, J. C. ; Farrand, S. K. ; NESTER, E. W. ; Burr, T. J. ; Banta, L. ; Dickerman, A. W. ; Paulsen, I. ; OTTEN, L. ; Suen, G. ; Welch, R. ; Almeida, N. F. ; Arnold, F. ; Burton, O. T. ; Du, Z. ; Ewing, A. ; Godsy, E. ; Heisel, S. ; et.al. Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria. Journal of Bacteriology (Print). v. 191, p. 2501-2511, 2009. Qualis: A3
49.	TORRES, T. T.; AZEREDO-ESPIN, A.M.L.. Population genetics of New World screwworm from the Caribbean: insights from microsatellite data. Medical and Veterinary Entomology. v. 23, p. 23-31, 2009. Qualis: A2
50.	TORRES, T. T.; DOLEZAL, M. ; SCHLÖTTERER, C. ; OTTENWÄLDER, B.. Expression profiling of Drosophila mitochondrial genes via deep mRNA sequencing. Nucleic Acids Research. v. 37, p. 7509-7518, 2009. Qualis: A1
51.	Tseng, Tsai-Tien ; Tyler, Brett M ; Setubal, João C. Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology. BMC Microbiology (Online). v. 9, p. S2, 2009. Qualis: A2
52.	VENANCIO, Thiago M ; Cristofoletti, P. T. ; Ferreira, C. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Terra, W. R.. The Aedes aegypti larval transcriptome: a comparative perspective with emphasis on trypsins and the domain structure of peritrophins. Insect Molecular Biology. v. 18, p. 33-44, 2009. Qualis: A1
53.	VIBRANOVSKI, M. D.; LOPES, H. F. ; KARR, T. L. ; LONG, M.. Stage-Specific Expression Profiling of Drosophila Spermatogenesis Suggests that Meiotic Sex Chromosome Inactivation Drives Genomic Relocation of Testis-Expressed Genes. PLOS Genetics (Online). v. 5, p. e1000731, 2009. Qualis: A1
54.	VIBRANOVSKI, M. D.; ZHANG, Y. ; LONG, M.. General gene movement off the X chromosome in the Drosophila genus. Genome Research. v. 19, p. 897-903, 2009. Qualis: A1
55.	Vieira, Rafael F.C. ; Molento, Marcelo B. ; dos Santos, Leonilda C. ; Moraes, Wanderlei ; Cubas, Zalmir S. ; Santos, Andrea P. ; Guimaraes, Ana M.S. ; Mohamed, Ahmed ; Barros Filho, Ivan R. ; Biondo, Alexander W.. Detection of a novel hemoplasma based on 16S rRNA gene DNA in captive and free-ranging capybaras (Hydrochaeris hydrochaeris). Veterinary Microbiology (Amsterdam. Print). v. 139, p. 410-413, 2009. Qualis: Não identificado (PRINT))
56.	Warren, Andrew S ; Setubal, João. The Genome Reverse Compiler: an explorative annotation tool. BMC Bioinformatics. v. 10, p. 35, 2009. Qualis: A1
57.	Wattam, A. R. ; Williams, K. P. ; Snyder, E. E. ; Almeida, N. F. ; Shukla, M. ; Dickerman, A. W. ; Crasta, O. R. ; Kenyon, R. ; Lu, J. ; Shallom, J. M. ; Yoo, H. ; Ficht, T. A. ; Tsolis, R. M. ; Munk, C. ; Tapia, R. ; Han, C. S. ; Detter, J. C. ; Bruce, D. ; Brettin, T. S. ; SETUBAL, J. C. ; et.al. Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle. Journal of Bacteriology (Print). v. 191, p. 3569-3579, 2009. Qualis: A3

2008

1.	Bermudez, L. ; Urias, U. ; Milstein, D. ; Kamenetzky, L. ; Asis, R. ; Fernie, A. R. ; VAN SLUYS, M A ; Carrari, F. ; ROSSI, M.. A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit. Journal of Experimental Botany. v. 59, p. 2875-2890, 2008. Qualis: A1
2.	Brandao, A. D. ; Del Bem, L. E. V. ; Vincentz, M. ; BUCKERIDGE, M. S.. Expression pattern of four storage xyloglucan mobilization-related genes during seedling development of the rain forest tree Hymenaea courbaril L.. Journal of Experimental Botany. v. 60, p. 1191-1206, 2008. Qualis: A1
3.	Brito, Glauber Costa ; Fachel, Ângela A. ; Vettore, Andre Luiz ; VIGNAL, Giselle M ; Gimba, Etel R.P. ; Campos, Franz S. ; Barcinski, Marcello A. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Reis, Eduardo M.. Identification of protein-coding and intronic noncoding RNAs down-regulated in clear cell renal carcinoma. Molecular Carcinogenesis. v. 47, p. 757-767, 2008. Qualis: A3
4.	CAMPOS, Patrícia Danieli ; ALVARENGA, Kátia de Freitas ; FREDERIGUE, Natália Barreto ; NASCIMENTO, Leandra Tabanez Do ; Sameshima, K. ; Costa Filho, Orozimbo Alves ; COSTA, O. A. ; Bevilacqua, Maria Cecília. Habilidades de ordenação temporal em usuários de implante coclear multicanal. Revista Brasileira de Otorrinolaringologia (Impresso). v. 74, p. 884-889, 2008. Qualis: Não identificado (REVISTA BRASILEIRA DE OTORRINOLARINGOLOGIA)
5.	CARDOSO, F. C. ; Gilson C. Macedo ; Elisandra Gava ; Gregory T. Kitten ; Vitor L. Mati ; Alan L. de Melo ; Marcelo V. Caliari ; Giulliana T. Almeida ; Thiago M. Venancio ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; Sergio C. Oliveira. Schistosoma mansoni Tegument Protein Sm29 Is Able to Induce a Th1-Type of Immune Response and Protection against Parasite Infection. PLoS Neglected Tropical Diseases (Online). v. 2, p. e308, 2008. Qualis: A1
6.	CASTRO, N. P. ; OSÓRIO, C. A. B. T. ; TORRES, C. H. ; BASTOS, E. P. ; MOURÃO NETO, M. ; SOARES, F. A. ; BRENTANI. HP ; CARRARO, D. M.. Evidence that molecular changes in cells occur before morphological alterations during the progression of breast ductal carcinoma. Breast Cancer Research. v. 10, p. R85, 2008. Qualis: A1
7.	Charchat-Fichman, H. ; Nitrini, R. ; Caramelli, P. ; Sameshima, K.. A new brief computerized cognitive screening battery (CompCogs) for early diagnosis of Alzheimer´s disease. Dementia & Neuropsychologia. v. 2, p. 13-19, 2008.Qualis: B3
8.	da Silva, F.C. ; Diaz-Ambrona, C.G.H. ; BUCKERIDGE, M. S. ; SOUZA, A. P. ; De Souza, Amanda Pereira ; Barbieri, V. ; Dourado Neto, D.. Sugarcane and Climate Change: effects of CO2 on potential growth and development. Acta Horticulturae. v. 802, p. 331-336, 2008.Qualis: B4
9.	de Mello Varani, Alessandro ; Souza, Rangel Celso ; Nakaya, Helder I. ; de Lima, Wanessa Cristina ; Paula de Almeida, Luiz Gonzaga ; Kitajima, Elliot Watanabe ; Chen, Jianchi ; Civerolo, Edwin ; Vasconcelos, Ana Tereza Ribeiro ; Van Sluys, Marie-Anne. Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation. Plos One. v. 3, p. e4059, 2008. Qualis: A1
10.	de Souza, R. F.; Anantharaman, V. ; de Souza, S. J. ; Aravind, L. ; Gueiros-Filho, F. J.. AMIN domains have a predicted role in localization of diverse periplasmic protein complexes. Bioinformatics (Oxford). v. 24, p. 2423-2426, 2008. Qualis: A1
11.	Dhivya Arasappan ; Aurelien Mazurie ; Alves, J. M. ; Danail Bonchev ; BUCK, G. A.. Path-a-Way: A Strategy for Network Analysis of Microarray Data. IEEE Transactions on Biomedical Engineering (Print). v. 1, p. 432-436, 2008.Qualis: A1
12.	DURHAM, A. M.; Chimara, E. ; FERRAZOLI, L. ; UEKY, S. Y. M. ; MARTINS, M. C. ; ARBEIT, R. D. ; LEAO, S. C.. Reliable identification of mycobacterial species by PCR-restriction enzyme analysis (PRA)-hsp65 in a reference laboratory and elaboration of a sequence-based extended algorithm of PRA-hsp65 patterns. BMC Microbiology (Online). v. 8, p. 48, 2008. Qualis: A2
13.	DURHAM, A. M.; LIMA, K. ; VIANA-NIERO, C. ; da Silva RABELLO, M. C. ; L.R.MARSOLA, ; LEAO, S. C.. Molecular Characterization of Mycobacterium massiliense and Mycobacterium bolletii in Isolates Collected from Outbreaks of Infections after Laparoscopic Surgeries and Cosmetic Procedures. Journal of Clinical Microbiology (Print). v. 46, p. 850-855, 2008. Qualis: A2
14.	Gillespie, Joseph J. ; Williams, Kelly ; Shukla, Maulik ; Snyder, Eric E. ; Nordberg, Eric K. ; Ceraul, Shane M. ; Dharmanolla, Chitti ; Rainey, Daphne ; Soneja, Jeetendra ; Shallom, Joshua M. ; Vishnubhat, Nataraj Dongre ; Wattam, Rebecca ; Purkayastha, Anjan ; Czar, Michael ; Crasta, Oswald ; SETUBAL, J. C. ; Azad, Abdu F. ; Sobral, Bruno S.. Rickettsia Phylogenomics: Unwinding the Intricacies of Obligate Intracellular Life. Plos One. v. 3, p. e2018, 2008. Qualis: A1
15.	GIULIATTI, S.; BRAUN, G. H. ; JORGE, D. M. M. ; RAMOS, H. P. ; ALVES, R. M. ; SILVA, V. B. ; VILELA, S. ; TAFT, C. A. ; SILVA, C. H. T. P.. Molecular Dynamics, Flexible Docking, Virtual Screening, ADMET Predictions, and Molecular Interaction Field Studies to Design Novel Potential MAO-B Inhibitors. Journal of Biomolecular Structure & Dynamics. v. 25, p. 347-355, 2008. Qualis: A3
16.	Gonzalez-Kristeller, D.C. ; FARAGE, L. ; FIORINI, L.C. ; LOOMIS, W. F. ; DASILVA, A.M.. The P450 oxidoreductase, RedA, controls development beyond the mound stage in Dictyostelium discoideum. BMC Developmental Biology (Online). v. 8, p. 1-10, 2008. Qualis: B1
17.	GUIMARAES, A. M. S.; ALTHAUS, Lilian Karenina ; TULLIO, D. ; DECONTO, Ivan ; SILVA, A. W. ; FERRARI, Marcus Vinícius ; BIONDO, A. W. ; ALBERTON, Geraldo Camilo. Laminitis in culled sows from commercial swine farms of Southern Brazil. Archives of Veterinary Science. v. 13, p. 140-144, 2008.Qualis: B2
18.	LIMA, W. ; PAQUOLA, A. C. ; VARANI, A. M. ; VANSLUYS MA ; MENCK, C. F. M.. Laterally transferred genomic islands in Xanthomonadales related to pathogenicity and primary metabolism.. FEMS Microbiology Letters. v. 281, p. 87-97, 2008. Qualis: B2
19.	LOURO, R ; ELJUNDI, T ; NAKAYA, H ; REIS, E ; VERJOVSKIALMEIDA, S ; Verjovski-Almeida, S.. Conserved tissue expression signatures of intronic noncoding RNAs transcribed from human and mouse loci. Genomics (San Diego). v. 92, p. 18-25, 2008. Qualis: A3
20.	Lu, Hong ; Patil, Prabhu ; Van Sluys, Marie-Anne ; White, Frank F. ; Ryan, Robert P. ; Dow, J. Maxwell ; Rabinowicz, Pablo ; Salzberg, Steven L. ; Leach, Jan E. ; Sonti, Ramesh ; Brendel, Volker ; Bogdanove, Adam J.. Acquisition and Evolution of Plant Pathogenesis¿Associated Gene Clusters and Candidate Determinants of Tissue-Specificity in Xanthomonas. . v. 3, p. e3828, 2008. Qualis: Não identificado ()
21.	MARTINS, D. C. ; BRAGA-NETO, U. ; BITTNER, M. L. ; HASHIMOTO, R. F. ; DOUGHERTY, E. R.. Intrinsically Multivariate Predictive Genes. IEEE Journal of Selected Topics in Signal Processing. v. 2, p. 424-439, 2008. Qualis: A1
22.	MASCHIETTO, M. ; DE CAMARGO, B. ; BRENTANI. HP ; GRUNDY, P. ; SREDNI, S. T. ; TORRES, C. H. ; MOTA, L. D. ; CUNHA, I. W. ; PATRÃO, D. F. C. ; COSTA, C. M. L. ; SOARES, F. A. ; BRENTANI, R. R. ; CARRARO, D. M.. Molecular profiling of isolated histological components of wilms tumor implicates a common role for the Wnt signaling pathway in kidney and tumor development. Oncology (Basel). v. 75, p. 81-91, 2008. Qualis: A4
23.	MENOSSI, M. ; SILVA-FILHO, M. C. ; Vincentz, M. ; Van-Sluys, M.-A. ; Souza, G. M.. Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development. . v. 2008, p. 1-12, 2008. Qualis: Não identificado ()
24.	OLIVEIRA, G ; FRANCO, G ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. The Brazilian contribution to the study of the Schistosoma mansoni transcriptome. Acta Tropica. v. 108, p. 179-182, 2008. Qualis: A1
25.	Oliveira. C.M. ; PEREIRA, A. C. ; de Andrade, M. ; SOLER, J. M. P. ; KRIEGER, J. E.. Heritability of cardiovascular risk factors in a Brazilian population: Baependi Heart Study. BMC Medical Genetics. v. 32, p. 1-8, 2008. Qualis: A4
26.	Pires dos Santos, Andrea ; SANTOS, R. P. ; BIONDO, A. W. ; DORA, J. M. ; GOLDANI, L. Z. ; OLIVEIRA, S. T. ; GUIMARAES, A. M. S. ; TIMENETSKY, J. ; de Morais, H. A. ; GONZALEZ, F. H. D. ; MESSICK, J. B.. Hemoplasma Infection in HIV-positive Patient, Brazil. Emerging Infectious Diseases (Print). v. 14, p. 1922-1924, 2008. Qualis: A1
27.	Querec, Troy D ; Akondy, Rama S ; Lee, Eva K ; Cao, Weiping ; Nakaya, Helder I ; Teuwen, Dirk ; Pirani, Ali ; Gernert, Kim ; Deng, Jiusheng ; Marzolf, Bruz ; Kennedy, Kathleen ; Wu, Haiyan ; Bennouna, Soumaya ; Oluoch, Herold ; Miller, Joseph ; Vencio, Ricardo Z ; Mulligan, Mark ; Aderem, Alan ; Ahmed, Rafi ; Pulendran, Bali ; et.al. Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans. Nature Immunology. v. 10, p. 116-125, 2008. Qualis: A1
28.	RAM, Rossetti ; JCC, Lorenzi ; S, Giuliatti ; CL, Silva ; AAM, Coelho-Castelo. In Silico Prediction of the Tertiary Structure of M. leprae Hsp65 Protein Shows an Unusual Structure in Carboxy-terminal Region. Journal of Computer Science and Systems Biology (Online). v. 01, p. 126-131, 2008. Qualis: Não identificado (LEPRAE HSP65 PROTEIN SHOWS AN UNUSUAL STRUCTURE IN CARBOXY-TERMINAL REGION. JOURNAL OF COMPUTER SCIENCE AND SYSTEMS BIOLOGY)
29.	RINCONES, J. ; SCARPARI, L. M. ; CARAZZOLLE, M. F. ; MONDENGO, J. M. C. ; FORMIGHIERI, E. F. ; Barau, J. G. ; COSTA, G. G. L. ; CARRARO, D. M. ; Brentani, Helena P. ; VILAS-BOAS, L. A. ; OLIVEIRA, B. V. ; SABHA, M. ; DIAS, R. ; CASCARDO, J. M. ; AZEVEDO, R. A. ; MEINHARDT, L. W. ; PEREIRA, G. A. G.. Differential Gene Expression Between the Biotrophic-Like and Saprotrophic Mycelia of the Witches' Broom Pathogen. Molecular Plant-Microbe Interactions. v. 21, p. 891-908, 2008. Qualis: A1
30.	Rodrigues, P. A. L. ; Sameshima, Koichi ; Zaidan, E.. Perfil de desempenho em teste de triagem de processamento auditivo (SCAN) em crianças de sete e oito anos residentes em Cuiabá. Revista da Sociedade Brasileira de Fonoaudiologia. v. 13, p. 173-178, 2008. Qualis: Não identificado (REVISTA DA SOCIEDADE BRASILEIRA DE FONOAUDIOLOGIA)
31.	ROSA, A.C. ; LESSINGER, A.C. ; AZEREDO-ESPIN, A.M.L. ; TORRES, T.T.. Isolation and characterization of polymorphic microsatellite loci for the horn fly, Haematobia irritans (L.) (Diptera: Muscidae). Molecular Ecology Notes. v. 8, p. 971-973, 2008. Qualis: Não identificado (MOLECULAR ECOLOGY NOTES)
32.	Salem-Izacc, S. M. ; KOIDE, T. ; Vencio, R. Z. N. ; Gomes, S. L.. Global Gene Expression Analysis during Germination in the Chytridiomycete Blastocladiella emersonii. Eukaryotic Cell. v. 8, p. 170-180, 2008. Qualis: Não identificado (EUKARYOTIC CELL)
33.	Salzberg, Steven L ; Sommer, Daniel D ; Schatz, Michael C ; Phillippy, Adam M ; Rabinowicz, Pablo D ; Tsuge, Seiji ; Furutani, Ayako ; Ochiai, Hirokazu ; Delcher, Arthur L ; Kelley, David ; Madupu, Ramana ; Puiu, Daniela ; Radune, Diana ; Shumway, Martin ; Trapnell, Cole ; Aparna, Gudlur ; Jha, Gopaljee ; Pandey, Alok ; Patil, Prabhu B ; SLUYS MAV. ; et.al. Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A. BMC Genomics. v. 9, p. 204, 2008. Qualis: A2
34.	Santos, L. M. ; Dzirasa, K. ; Kubo, R. ; Silva, M. T. A. ; Ribeiro, S. ; Sameshima, Koichi ; Valle, A. C. ; Timo-Iaria, C.. Baseline hippocampal theta oscillation speeds correlate with rate of operant task acquisition. Behavioural Brain Research. v. 190, p. 152-155, 2008. Qualis: A2
35.	Serafini, C. A. V. ; ROSA, G. A. ; GUIMARAES, A. M. S. ; de Morais, H. A. ; BIONDO, A. W.. Survey of Owned Feline and Canine Populations in Apartments from a Neighbourhood in Curitiba, Brazil. Zoonoses and Public Health (Print). v. 55, p. 402-405, 2008. Qualis: A1
36.	SOBRAL, R. A. ; HONDA, S. T. ; KATAYAMA, M. L. H. ; BRENTANI. HP ; BRENTANI, M. M. ; PATRÃO, D. F. C. ; FOLGUEIRA, M. A. A. K.. Tumor slices as a model to evaluate doxorubicin in vitro treatment and expression of trios of genes PRSS11, MTSS1, CLPTM1 and PRSS11, MTSS1, SMYD2 in canine mammary gland cancer. Acta Veterinaria Scandinavica. v. 50, p. 27, 2008. Qualis: A2
37.	SOUZA, A. P. ; Gaspar M. ; Emerson Alves Silva ; Eugênio Cesar Ulian ; Alessandro Jaquiel Waclawovsky ; MILTON YUTAKA NISHIYAMA-JR ; Renato Vicentini dos Santos ; Marcelo Menossi Teixeira ; Glaucia Mendes Souza ; BUCKERIDGE, M. S.. Elevated CO2 increases photosynthesis, biomass and productivity, and modifies gene expression in sugarcane. Plant, Cell and Environment. v. 31, p. 1116-1127, 2008. Qualis: A1
38.	Takahashi, D. Y. ; Baccalá, L. A. ; Sameshima, K.. Partial directed coherence asymptotics for VAR processes of infinite order. International Journal of Bioelectromagnetism. v. 10, p. 31-36, 2008.Qualis: Não identificado (INTERNATIONAL JOURNAL OF BIOELECTROMAGNETISM)
39.	Tavares, J. R. ; de Souza, R. F. ; Meira, G. L. S. ; Gueiros-Filho, F. J.. Cytological Characterization of YpsB, a Novel Component of the Bacillus subtilis Divisome. Journal of Bacteriology (Print). v. 190, p. 7096-7107, 2008. Qualis: A3
40.	TORRES, T.T.; AZEREDO-ESPIN, A.M.L.. Characterization of polymorphic microsatellite markers for the blowfly Chrysomya albiceps (Diptera: Calliphoridae). Molecular Ecology Resources (Print). v. 8, p. 208-210, 2008. Qualis: A1
41.	TORRES, T.T.; METTA, M. ; OTTENWÄLDER, B. ; SCHLÖTTERER, C.. Gene expression profiling by massively parallel sequencing.. Genome Research. v. 18, p. 172-177, 2008. Qualis: A1
42.	Van, P.T. ; Schmid, A.K. ; King, N.L. ; Kaur, A. ; Pan, M. ; Whitehead, K. ; KOIDE, T. ; Facciotti, M.T. ; Goo, Y.A. ; Deutsch, E.W. ; Reiss, D.J. ; Mallick, P. ; Baliga, N.S.. Halobacterium salinarum NRC-1 PeptideAtlas: toward strategies for targeted proteomics and improved proteome coverage.. Journal of Proteome Research. v. 7, p. 3755-3764, 2008. Qualis: A1
43.	Verjovski-Almeida, S.; Verjovski-Almeida, S. ; DEMARCO, R. Current developments on Schistosoma proteomics. Acta Tropica. v. 108, p. 183-185, 2008. Qualis: A1
44.	VIBRANOVSKI, M. D.; KOERICH, L. B. ; CARVALHO, A. B.. Two New Y-Linked Genes in Drosophila melanogaster. Genetics (Austin, Tex.). v. 179, p. 2325-2327, 2008. Qualis: A2
45.	Yan, S. ; Liu, H. ; Mohr, T. J. ; Jenrette, J. ; Chiodini, R. ; Zaccardelli, M. ; SETUBAL, J. C. ; Vinatzer, B. A.. Role of Recombination in the Evolution of the Model Plant Pathogen Pseudomonas syringae pv. tomato DC3000, a Very Atypical Tomato Strain. Applied and Environmental Microbiology. v. 74, p. 3171-3181, 2008. Qualis: A1
46.	ZAINI, Paulo A. ; FOGAÇA, A.C. ; LUPO, F.N. G. ; NAKAYA, Helder I ; VENCIO, Ricardo Z N ; DASILVA, A.M.. The Iron Stimulon of Xylella fastidiosa Includes Genes for Type IV Pilus and Colicin V-Like Bacteriocins. Journal of Bacteriology. v. 190, p. 2368-2378, 2008. Qualis: A3
47.	Zerillo, Marcelo M ; VAN SLUYS, M A ; Camargo, Luis ; Monteiro-Vitorello, Claudia B. Characterization of new IS elements and studies of their dispersion in two subspecies of Leifsonia xyli. BMC Microbiology (Online). v. 8, p. 127, 2008. Qualis: A2

2007

1.	ALVES, J. M. P.; BUCK, G. A.. Automated System for Gene Annotation and Metabolic Pathway Reconstruction Using General Sequence Databases. Chemistry & Biodiversity (Print). v. 4, p. 2593-2602, 2007. Qualis: A4
2.	AMARAL, L. I. V. DO ; Gaspar M. ; COSTA, P. F. ; AIDAR, M. P. M. ; BUCKERIDGE, M. S.. Novo método enzimático rápido e sensível de extração e dosagem de amido em materiais vegetais.. Hoehnea (São Paulo). v. 34, p. 425-431, 2007.Qualis: B4
3.	ANDRIOLI, Luiz Paulo ; SOUZA, Glaucia Mendes ; DA SILVA, A. M.. Staurosporine induces tyrosine phosphorylation in Dictyostelium discoideum proteins. Cell Biochemistry and Function. v. 25, p. 555-561, 2007. Qualis: B1
4.	BARRERA, J. ; CESAR JÚNIOR, R. M. ; HUMES JUNIOR, C. ; MARTINS JÚNIOR, D. C. ; PATRÃO, D. F. C. ; SILVA, P. J. ; BRENTANI. HP. A feature selection approach for identification of signature genes from SAGE data.. BMC Bioinformatics. v. 8, p. 169, 2007. Qualis: A1
5.	BUCKERIDGE, M. S. Mudanças climáticas, biodiversidade e sociedade: como a teoria de redes pode ajudar a compreender o presente e planejar o futuro?. Multiciência (UNICAMP). v. 8, p. 88-107, 2007.Qualis: Não identificado (MULTICIÊNCIA)
6.	CANTAO, M. ; FERREIRA, J. E. ; LEMOS, E. G. M.. Optimal Clones Identifier for Genomic Shotgun Libraries: OC Identifier Tool. GENETICS AND MOLECULAR RESEARCH. v. 6, p. 743-755, 2007.Qualis: B3
7.	CARREIRA, A. C. O. ; BASTOS, C. ; Verjovski-Almeida, S.. Probing SERCA1a sarcoplasmic reticulum Ca2+-ATPase phosphorylation-site mutant D351E with inorganic phosphate. Brazilian Journal of Medical and Biological Research. v. 40, p. 1323-1332, 2007. Qualis: A4
8.	CHIROMATZO, A. O. ; OLIVEIRA, T. Y. K. ; PEREIRA, G. ; COSTA, A. Y. ; MONTESCO, C. A. E. ; GRAS, D. E. ; YOSETAKE, F. ; CERVATO, M. C. ; PRADO, P. R. R. ; CARDENAS, R. G. C. C. L. ; CERRI, R. ; BORGES, R. L. ; LEMOS, R. N. ; ALVARENGA, S. M. ; PERALLIS, V. R. C. ; PINHEIRO, D. G. ; SILVA, I. T. ; BRANDÃO, R. M. ; CUNHA, M. A. V. ; GIULIATTI, S. ; et.al. miRNApath: a database of miRNAs, target genes and metabolic pathways. Genetics and Molecular Research. v. 6, p. 859-865, 2007.Qualis: B3
9.	da Silva Neto, J. F. ; KOIDE, T. ; Abe, C.M. ; Gomes, S. L. ; MARQUES, M. V.. Role of sigma54 in the regulation of genes involved in type I and type IV pili biogenesis in Xylella fastidiosa. Archives of Microbiology. v. 189, p. 249-261, 2007. Qualis: B2
10.	da Silva Neto, J. F. ; KOIDE, T. ; MARQUES, M. V. ; Gomes, S. L.. The single extracytoplasmic-function sigma factor of Xylella fastidiosa is involved in the heat shock response and presents an unusual regulatory mechanism.. Journal of Bacteriology. v. 189, p. 551-560, 2007. Qualis: A3
11.	DASILVA, J ; FERNANDES, R ; TICLI, F ; OLIVEIRA, C ; MAZZI, M ; FRANCO, J ; GIULIATTI, S ; PEREIRA, P ; SOARES, A ; SAMPAIO, S. Triterpenoid saponins, new metalloprotease snake venom inhibitors isolated from Pentaclethra macroloba. Toxicon (Oxford). v. 50, p. 283-291, 2007. Qualis: A4
12.	de Morais, H. A. ; GUIMARAES, A. M. S. ; VIDOTTO, O ; BAUMANN, A ; BIONDO, A. W. ; MESSICK, J. B.. Co-infection with Mycoplasma haemofelis and `Candidatus Mycoplasma haemominutum¿ in three cats from Brazil?. Journal of Feline Medicine and Surgery. v. 9, p. 518-520, 2007. Qualis: A1
13.	DURHAM, A. M.; Ling KH ; MA, R. ; RIVAILLER, P. ; IVENS, A. ; MADEIRA, A. M. ; Mungall K. ; Novaes, J. ; Sobreira, T.J. ; GRUBER, A. ; BERRIMAN, M. ; Tomley, F. ; DEAR, P. H. ; WAN, K. L.. Sequencing and analysis of chromosome 1 of Eimeria tenella reveals a unique segmental organization. Genome Research. v. 17, p. 311-319, 2007. Qualis: A1
14.	DURHAM, A. M.; MACHADO-LIMA, A. ; Hernando A. del Portillo. Computational methods in noncoding RNA research. Journal of Mathematical Biology (Print). v. 56, p. 15-49, 2007. Qualis: A4
15.	FAN, C. ; VIBRANOVSKI, M. D. ; CHEN, Y. ; LONG, M.. A Microarray Based Genomic Hybridization Method for Identification of New Genes in Plants: Case Analyses of Arabidopsis and Oryza. Journal of Integrative Plant Biology. v. 49, p. 915-926, 2007. Qualis: A1
16.	Fanganiello RD ; Sertie AL ; REIS, E. M. ; Yeh, E ; OLIVEIRA, N. A. ; Bueno DF ; Kerkis I ; Alonso N ; Cavalheiro S ; Matsushita H ; Freitas R ; Verjovski-Almeida, S. ; Passos-Bueno MR. Apert p.Ser252Trp mutation in FGFR2 alters osteogenic potential and gene expression of cranial periosteal cells. Molecular Medicine (Cambridge). v. 13, p. 422-442, 2007. Qualis: Não identificado (MOLECULAR MEDICINE)
17.	Gonçalves EG ; Mayo SJ ; SLUYS MAV. ; Salatino A. Combined genotypic-phenotypic phylogeny of the tribe Spathicarpeae (Araceae) with reference to independent events of invasion to Andean regions.. Molecular Phylogenetics and Evolution. v. jan, p. in press, 2007. Qualis: A1
18.	GUIMARAES, A. M. S.; BIONDO, A. W. ; LARA, A. C. ; MESSICK, J. B.. Exploratory study of Mycoplasma suis (Eperythrozoon suis) on four commercial pig farms in southern Brazil. Veterinary Record. v. 160, p. 50-53, 2007. Qualis: A1
19.	GUIMARAES, A. M. S.; Javorouski, Manoel L. ; Bonat, Marcelo ; Lacerda, Oneida ; Balbinotti, Bruna ; Queiroz, Lucyenne G.P.B. ; Timenetsky, Jorge ; Biondo, Alexander W. ; Messick, Joanne B.. Molecular detection of "Candidatus Mycoplasma haemominutum" in a lion (Panthera leo) from a brazilian zoological garden. Revista do Instituto de Medicina Tropical de São Paulo (Impresso). v. 49, p. 195-196, 2007. Qualis: B1
20.	HAVLIOGLU, N. ; WANG, J. ; FUSHIMI, K. ; VIBRANOVSKI, M. D. ; KAN, Z. ; GISH, W. ; FEDOROV, A. ; LONG, M. ; WU, J. Y.. An Intronic Signal for Alternative Splicing in the Human Genome. PLoS One. v. 2, p. e1246, 2007. Qualis: A1
21.	HÜNEMEIER, T.; Carvalho, CB ; Marrero, AR ; SALZANO, F. M. ; BORTOLINI, M. C.. Niger-Congo speaking populations and the formation of the Brazilian gene pool: mtDNA and Y-chromosome data. American Journal of Physical Anthropology. v. 133, p. 854-867, 2007. Qualis: A2
22.	KASHIWABARA, A. Y. ; VIEIRA, D. ; LIMA, A. M. ; DURHAM, A. M.. Splice site prediction using stochastic regular grammars. GENETICS AND MOLECULAR RESEARCH. v. 6, p. 105-115, 2007.Qualis: B3
23.	LEVANOGARCIA, Julio ; MORTARA, Renato A ; Verjovski-Almeida, S. ; DEMARCO, Ricardo. Characterization of Schistosoma mansoni ATPDase2 gene, a novel apyrase family member. Biochemical and Biophysical Research Communications. v. 352, p. 384-389, 2007. Qualis: A3
24.	LOURO, Rodrigo ; NAKAYA, Helder I ; AMARAL, P. P. ; FESTA, Fernanda ; SOGAYAR, Mari C ; DA SILVA, A. M. ; VERJOVSKI-ALMEIDA, Sergio ; REIS, Eduardo M.. Androgen responsive intronic non-coding RNAs. BMC BIOLOGY. v. 5:4, p. 1-14, 2007. Qualis: A1
25.	MANETTI, Maria Elisa ; ROSSI, M. ; COSTA, A. P. P. ; Clausen AM ; SLUYS MAV.. Radiation of the Tnt1 retrotransposon superfamily in three Solanaceae genera.. BMC Evolutionary Biology (Online). v. 7, p. 34, 2007. Qualis: A1
26.	NAKAYA, Helder I ; AMARAL, P. P. ; LOURO, Rodrigo ; LOPES, A. ; FACHEL, A. A. ; Moreira, Y.B. ; El-Jundi, T.A. ; DA SILVA, A. M. ; REIS, Eduardo M. ; VERJOVSKI-ALMEIDA, Sergio. Genome mapping and expression analyses of human intronic noncoding RNAs reveal tissue-specific patterns and enrichment in genes related to regulation of transcription. Genome Biology. v. 8, p. 1-25, 2007. Qualis: Não identificado (GENOME BIOLOGY)
27.	NAKAYA, Helder I ; BECKEDORFF, Felipe Cesar F ; Baldini, ML ; FACHEL, A. ; REIS, Eduardo M ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Splice Variants of TLE Family Genes and Up-Regulation of a TLE3 Isoform in Prostate Tumors.. Biochemical and Biophysical Research Communications. v. 364, p. 918-923, 2007. Qualis: A3
28.	NENE, V. ; ETALII ; Verjovski-Almeida, S. ; ETAL ; 92otherauthors ; Severson, D.. Genome Sequence of Aedes aegypti, a Major Arbovirus Vector. Science. v. 316, p. 1718-1723, 2007. Qualis: A1
29.	OJOPI, E ; OLIVEIRA, P. S. L. ; NUNES, D. N. ; PAQUOLA, A ; DEMARCO, Ricardo ; GREGORIO, S. ; AIRES, K. ; MENCK, C. F. M. ; LEITE, Luciana C ; Verjovski-Almeida, S. ; DIAS NETO, E.. A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE. BMC Genomics. v. 8, p. 186, 2007. Qualis: A2
30.	ROELA, R. A. ; CARRARO, D. M. ; BRENTANI. HP ; KAIANO, J. ; SIMÃO, D. F. ; GUARNIEIRO, R. ; LOPES, L. F. ; BOROJEVIC, R. ; BRENTANI, M. M.. Gene stage-specific expression in the microenvironment of pediatric myelodysplastic syndromes. Leukemia Research. v. 31, p. 579-589, 2007. Qualis: A3
31.	SETTA, N. ; COSTA, A. P. P. ; Lopes FR ; SLUYS MAV. ; CARARETO, C. M.. Transposon Display supports transpositional activity of P element in species of the saltans group of Drosophila. Journal of Genetics. v. 86, p. 37-43, 2007.Qualis: B3
32.	SETUBAL, J C ; Verjovski-Almeida, S.. Brazilian Symposium on Bioinformatics.. Computers in Biology and Medicine. v. 37, p. 113-114, 2007.Qualis: A2
33.	Snyder, E. E. ; Kampanya, N. ; Lu, J. ; Nordberg, E. K. ; Karur, H. R. ; Shukla, M. ; Soneja, J. ; Tian, Y. ; Xue, T. ; Yoo, H. ; Zhang, F. ; Dharmanolla, C. ; Dongre, N. V. ; Gillespie, J. J. ; Hamelius, J. ; Hance, M. ; Huntington, K. I. ; Jukneliene, D. ; Koziski, J. ; SETUBAL, J. C. ; et.al. PATRIC: The VBI PathoSystems Resource Integration Center. Nucleic Acids Research. v. 35, p. D401-D406, 2007. Qualis: A1
34.	SOUSA-CANAVEZ, J. M. ; BETON, Daniela ; Gonzalez-Kristeller, D.C. ; DA SILVA, A. M.. Identification and domain mapping of Dictyostelium discoideum type-1 protein phosphatase inhibitor-2. Biochimie (Paris). v. 89, p. 692-701, 2007. Qualis: A2
35.	Takahashi, D. Y. ; Baccalá, L. A. ; Sameshima, K.. Connectivity inference between neural structures via partial directed coherence. Journal of Applied Statistics. v. 34, p. 1259-1273, 2007. Qualis: B1
36.	TONINI, P. P. ; LISBOA, C. G. ; SILVA, C. O. ; VIVEIROS, S. C. M. ; BUCKERIDGE, M. S.. Testa is involved in the control of storage mobilisation in seeds of Sesbania virgata (Cav.) Pers., a tropical legume tree from the Atlantic Forest. Trees (Berlin). v. 21, p. 13-21, 2007. Qualis: A2
37.	TREPODE, N. W. ; ARMELIN, H. A. ; BITTNER, M. L. ; BARRERA, J. ; GUBITOSO, M. D. ; HASHIMOTO, R. F.. A Robust Structural PGN Model for Control of Cell-Cycle Progression Stabilized by Negative Feedbacks. EURASIP Journal on Bioinformatics and Systems Biology (Online). v. 2007, p. 1-11, 2007. Qualis: Não identificado (EURASIP JOURNAL ON BIOINFORMATICS AND SYSTEMS BIOLOGY)
38.	VENANCIO, Thiago M ; DEMARCO, Ricardo ; ALMEIDA, Giulliana T ; OLIVEIRA, Katia C P ; SETUBAL, Joao C ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Analysis of Schistosoma mansoni genes shared with Deuterostomia and with possible roles in host interactions.. BMC Genomics. v. 8, p. 407, 2007. Qualis: A2
39.	Verjovski-Almeida, S.; VENANCIO, Thiago M ; OLIVEIRA, Katia C P ; ALMEIDA, Giulliana T ; DEMARCO, Ricardo. Use of a 44k oligoarray to explore the transcriptome of Schistosoma mansoni adult worms. Experimental Parasitology. v. 117, p. 236-245, 2007. Qualis: A4
40.	VIBRANOVSKI, M. D.; SAKABE, N. J. ; LONG, M.. Birth and evolution of human exons. ENCYCLOPEDIA OF LIFE SCIENCES (ONLINE). v. 1, p. 1, 2007. Qualis: NP
41.	VÊNCIO, R. Z. N. ; VARUZZA, L. ; PEREIRA, C. A. B. ; BRENTANI. HP ; SHMULEVICH, I.. Simcluster: clustering enumeration gene expression data on the simplex space. BMC Bioinformatics. v. 8, p. 246, 2007. Qualis: A1
42.	XU, P. ; ALVES, J. M. P. ; Kitten, T. ; Brown, A. ; Chen, Z. ; OZAKI, L. S. ; MANQUE, P. ; Ge, X. ; SERRANO, M. G. ; PUIU, D. ; Hendricks, S. ; WANG, Y. ; Chaplin, M. D. ; Akan, D. ; Paik, S. ; PETERSON, D. L. ; Macrina, F. L. ; BUCK, G. A.. Genome of the Opportunistic Pathogen Streptococcus sanguinis. Journal of Bacteriology (Print). v. 189, p. 3166-3175, 2007. Qualis: A3
43.	Yu, G.X. ; Snyder, E.E. ; Boyle, S.M. ; Crasta, O.R. ; Czar, M. ; Mane, S.P. ; Purkayastha, A. ; Sobral, B. ; Setubal, J.C.. A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case. Nucleic Acids Research. v. 35, p. 3953-3962, 2007. Qualis: A1

2006

1.	DURHAM, A. M.; ALBRECHT, L. ; Emilio F. Merino ; HOFFMANN, E. H. ; URBANO, M. ; de Mattos Ferreira, R.G. ; OSAKABE, A. L. ; Dalla Martha, R.C. ; Ramharter, M. ; FERREIRA, J. E. ; Hernando A. del Portillo ; WUNDERLICH, G.. Extense variant gene family repertoire overlap in Western Amazon Plasmodium falciparum isolates. Molecular and Biochemical Parasitology (Print). v. 150, p. 157-165, 2006. Qualis: A4
2.	ALCÂNTARA, P. H. N. ; MARTIN, L. ; SILVA, C. O. ; DIETRICH, S. M. C. ; BUCKERIDGE, M. S.. Purification of a beta-galactosidase from cotyledons of Hymenaea courbaril L. (Leguminosae. Enzyme properties and biological function. Plant Physiology and Biochemistry (Paris). v. 44, p. 619-627, 2006. Qualis: A1
3.	Almeida E.M. ; COSTA, P. F. ; BUCKERIDGE, M. S. ; ALVES, M. A. S.. Potential bird dispersers of Psychotria in an area of Atlantic Forest at Ilha Grande, RJ, Southeast Brazil: a biochemical analysis of the fruits. BRAZILIAN JOURNAL OF BIOLOGY, São Paulo. v. 66, n. 1, p. 29-41, 2006. Qualis: Não identificado (BRAZILIAN JOURNAL OF BIOLOGY, SÃO PAULO)
4.	Anghinah, R. ; Basile, L. I. ; Schmidt, M. T. ; Sameshima, Koichi ; Gattaz, W. F.. Artefatos biológicos no EEG quantitativo. Arquivos de Neuro-Psiquiatria, São Paulo, Brasil. v. 64, n. 2a, p. 264-268, 2006. Qualis: Não identificado (ARQUIVOS DE NEURO-PSIQUIATRIA, SÃO PAULO, BRASIL)
5.	ARAÚJO, L. V. ; SOARES, M. A. ; TANURI, A. ; OLIVEIRA, S. M. ; CHEQUER, P. ; SABINO, E. C. ; FERREIRA, J. E.. DBCollHIV: A Database System for Collaborative HIV analysis in Brazil. GENETICS AND MOLECULAR RESEARCH. v. 5, p. 203-215, 2006.Qualis: B3
6.	Baccalá, L. A. ; Sameshima, K.. Comments on `Is Partial Coherence a Viable Technique for Identifying Generators of Neural Oscillations?¿. Biological Cybernetics, In press. v. 95, p. 135-141, 2006. Qualis: Não identificado (BIOLOGICAL CYBERNETICS, IN PRESS)
7.	BARRETO, C. C. ; ARAÚJO, L. V. ; FERREIRA, J. E. ; SABINO, E. C.. Trends in Antiretroviral Drug Resistance and Clade Distributions Among HIV-1--Infected Blood Donors in Sao Paulo, Brazil. JAIDS-JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES. v. 41, n. 3, p. 388-341, 2006. Qualis: A1 (JOURNAL OF ACQUIRED IMMUNE DEFICIENCY SYNDROMES)
8.	BRASCHI, Simon ; CURWEN, RACHEL S. ; ASHTON, PETER D. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; WILSON, Alan. The tegument surface membranes of the human blood parasiteSchistosoma mansoni: A proteomic analysis after differential extraction. Proteomics (Weinheim. Print). v. 6, p. 1471-1482, 2006. Qualis: Não identificado (PRINT))
9.	CARVALHO, R.A. ; TORRES, T.T. ; AZEREDO-ESPIN, A.M.L.. A survey of mutations in the Cochliomyia hominivorax (Diptera: Calliphoridae) esterase E3 gene associated with organophosphate resistance and the molecular identification of mutant alleles.. Veterinary Parasitology. v. 140, p. 344-351, 2006. Qualis: A1
10.	DE OLIVEIRA, FRANCISCO MEIRELLES BASTOS ; DE ABREU DA SILVA, ISABEL CAETANO ; RUMJANEK, FRANKLIN DAVID ; DIAS-NETO, EMMANUEL ; GUIMARÃES, PEDRO EDSON MOREIRA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; ?TROS, MICHAL ; FANTAPPIÉ, MARCELO ROSADO. Cloning the genes and DNA binding properties of High Mobility Group B1 (HMGB1) proteins from the human blood flukes Schistosoma mansoni and Schistosoma japonicum. Gene (Amsterdam). v. 377, p. 33-45, 2006. Qualis: A4
11.	DEMARCO, Ricardo ; Oliveira, Katia C. ; Venancio, Thiago M. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Gender biased differential alternative splicing patterns of the transcriptional cofactor CA150 gene in Schistosoma mansoni. Molecular and Biochemical Parasitology (Print). v. 150, p. 123-131, 2006. Qualis: A4
12.	DEMARCO, Ricardo ; VENANCIO, Thiago M ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. SmTRC1, a novel Schistosoma mansoni DNA transposon, discloses new families of animal and fungi transposons belonging to the CACTA superfamily.. BMC Evolutionary Biology (Online). v. 6, p. 89, 2006. Qualis: A1
13.	DURHAM, A. M.; HOFFMANN, E. H. ; MALAFRONTE, R. S. ; MORAES-AVILA, S. L. ; OSAKABE, A. L. ; WUNDERLICH, G. ; RIBOLLA, P. E. ; Hernando A. del Portillo ; URBANO, M.. Origins of sequence diversity in the malaria vaccine candidate merozoite surface protein-2 (MSP-2) in Amazonian isolates of Plasmodium falciparum. Gene (Amsterdam). v. 376, p. 224-230, 2006. Qualis: A4
14.	DURHAM, A. M.; Sobreira, T.J. ; GRUBER, A.. TRAP: automated classification, quantification and annotation of tandemly repeated sequences. BIOINFORMATICS, Oxford, Inglaterra. v. 22, n. 3, p. 361-362, 2006. Qualis: Não identificado (BIOINFORMATICS, OXFORD, INGLATERRA)
15.	FEITOSA, FABIANA M. ; CALVO, ERIC ; MERINO, EMILIO F. ; Durham, Alan M. ; JAMES, ANTHONY A. ; DE BIANCHI, ANTONIO G. ; MARINOTTI, OSVALDO ; CAPURRO, MARGARETH L.. A transcriptome analysis of the Aedes aegypti vitellogenic fat body. Journal of Insect Science (Online). v. 6, p. 1-26, 2006. Qualis: C
16.	Ferreira, A. R. J. ; Smulders, T. V. ; Sameshima, Koichi ; Mello, C. V. ; Jarvis, E. D.. VOCALIZATIONS AND ASSOCIATED BEHAVIORS OF THE SOMBRE HUMMINGBIRD (APHANTOCHROA CIRRHOCHLORIS) AND THE RUFOUS-BREASTED HERMIT (GLAUCIS HIRSUTUS). The Auk (Washington, D.C.). v. 123, p. 1129-1148, 2006. Qualis: A1
17.	FOLGUEIRA, M. A. A. K. ; SAMAIA, H. B. ; KATAYAMA, M. L. H. ; PATRÃO, D. F. C. ; CARRARO, D. M. ; MOURÃO NETO, M. ; BARBOSA, E. M. ; CALDEIRA, J. R. F. ; ABREU, A. P. S. ; LYRA, E. C. ; KAIANO, J. ; MOTA, L. D. ; CAMPOS, A. H. ; MACIEL, M. S.. Gene expression profiling of clinical stages II and III breast cancer. Brazilian Journal of Medical and Biological Research. v. 39, p. 1101-1103, 2006. Qualis: A4
18.	FONSECA, R. S. ; CARRARO, D. M. ; SAMAIA, H. B.. Mining ORESTES no-match database: can we still contribute to cancer transcriptome?. Genetics and Molecular Research, in press. v. 31, p. 24-32, 2006.Qualis: Não identificado (GENETICS AND MOLECULAR RESEARCH, IN PRESS)
19.	GODOI, P. ; GALHARDO, R. ; LUCHE, D. D. ; SLUYS MAV. ; MENCK, C. F. M. ; OLIVA, G.. Structure of the Thiazole Biosynthetic Enzyme THI1 from Arabidopsis thaliana. The Journal of Biological Chemistry. v. 281, p. online, 2006. Qualis: A1
20.	ITALIANO, I. ; FERREIRA, J. E.. Synchronization Options for Data Warehouse Designs. COMPUTER. v. 39, p. 53-57, 2006. Qualis: A2
21.	KOIDE, T.; SALEM-IZACC, S. ; Gomes, S. L. ; Vencio, R.Z.N.. SpotWhatR: a user-friendly microarray data analysis system.. Genetics and Molecular Research. v. 5, p. 93-107, 2006.Qualis: B3
22.	KOIDE, T.; VENCIO, R. ; Gomes, S. L.. Global gene expression analysis of the heat shock response in the phytopathogen Xylella fastidiosa.. Journal of Bacteriology (Print). v. 188, p. 5821-5830, 2006. Qualis: A3
23.	LISBOA, C. G. ; TONINI, P. P. ; TINÉ, M. A. S. ; BUCKERIDGE, M. S.. Endo-beta-mannanase from the endosperm of seeds of Sesbania virgata (Cav.) Pers. (Leguminosae): purification, characterisation and its dual role in germination and early seedling growth. Brazilian Journal of Plant Physiology. v. 18, p. 269-280, 2006. Qualis: A4 (INDIAN JOURNAL OF PLANT PHYSIOLOGY)
24.	LORENZINI, D ; SILVAJR, P ; SOARES, M ; ARRUDA, P ; SETUBAL, J ; DAFFRE, S. Discovery of immune-related genes expressed in hemocytes of the tarantula spider Acanthoscurria gomesiana. Developmental and Comparative Immunology. v. 30, p. 545-556, 2006. Qualis: A2
25.	MARQUES, D. A. ; FOGLIO, M. A. ; MORGANTE, P. G. ; SLUYS MAV. ; SHEPHERD, S. L. K.. Biotechnology approaches for production of antiulcerogenic dihydro-epideoxyarteannin B isolated from Artemisia annua L.. Revista Brasileira de Farmacognosia. v. 16, p. 291-299, 2006.Qualis: A4
26.	Marques, Maria Rita ; Buckeridge, Marcos S. ; BUCKERIDGE, M. S. ; Braga, Marcia R. ; Dietrich, Sonia M. C.. Characterization of an extracellular endopolygalacturonase from the saprobe Mucor ramosissimus Samutsevitsch and its action as trigger of defensive response in tropical plants. Mycopathologia (1975. Print). v. 162, p. 337-346, 2006. Qualis: Não identificado (PRINT))
27.	MERINO, E. F. ; FERNANDEZ-BECERRA, C. ; DURHAM, A. M. ; FERREIRA, J. E. ; TUMILASCI, V. F. ; DARC-NEVES, J. ; DADARIO, A. ; SILVA-NUNES, M. ; FERREIRA, M. U. ; WICKRAMARACHCHI, T. A. ; PORTILLO, H. A.. Multi-character population study of the vir subtelomeric multigene superfamily of Plasmodium vivax, a major human malaria parasite. Molecular and Biochemical Parasitology (Print). v. 149, p. 10-16, 2006. Qualis: A4
28.	OLIVEIRA JUNIOR, C. F. DE ; BRAGA, M. R. ; BUCKERIDGE, M. S.. Efeitos de oligossacarídeos de xiloglucano sobre o metabolismo extracelular de Rudgea jasminoides durante o crescimento. Hoehnea (São Paulo), São Paulo. v. 33, n. 2, p. 239-246, 2006.Qualis: Não identificado (HOEHNEA , SÃO PAULO)
29.	Oliveira Junior, Clovis José Fernandes de ; Braga, Marcia Regina ; Buckeridge, Marcos Silveira ; BUCKERIDGE, M. S.. Isolamento de oligossacarídeos de xiloglucano de dicotiledôneas através de hidrólise enzimática e cromatografia de exclusão molecular. Brazilian Journal of Botany. v. 29, p. 391-397, 2006. Qualis: B1
30.	OSMAN, Ahmed ; NILES, EDWARD G. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; LoVerde, Philip T.. Schistosoma mansoni TGF-β Receptor II: Role in Host Ligand-Induced Regulation of a Schistosome Target Gene. PLoS Pathogens. v. 2, p. e54, 2006. Qualis: A1
31.	PACHECO, F. H. T. ; SILVA-STENICO, M. E. ; SILVA, D. M. ; Van Sluys, M. A.. Characterization of Agrobacterium tumefaciens Strains Isolated from Brazilian Plant Species. American Journal of Plant Physiology. v. 2, p. 142-150, 2006.Qualis: Não identificado (AMERICAN JOURNAL OF PLANT PHYSIOLOGY)
32.	PARMIGIANI, R. B. ; BETTONI, F. ; VIBRANOVSKI, M. D. ; LOPES, M. H. ; MARTINS, W. K. ; CUNHA, I. W. ; SOARES, F. A. ; SIMPSON, A. J. G. ; DE SOUZA, S. J. ; CAMARGO, A. A.. Characterization of a cancer/testis (CT) antigen gene family capable of eliciting humoral response in cancer patients. Proceedings of the National Academy of Sciences of the United States of America (Online). v. 103, p. 18066-18071, 2006. Qualis: A1
33.	PEIXOTO, BERNARDOR ; VÊNCIO, RICARDOZN ; EGIDIO, CAMILAM ; MOTA-VIEIRA, LUISA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; REIS, EDUARDOM. Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays. BMC Genomics. v. 7, p. 35, 2006. Qualis: A2
34.	PEREIRA, G. S. P. ; BRANDÃO, R. M. ; GIULIATTI, S. ; ZAGO, M. A. ; SILVA JUNIOR, W. A.. Gene Class Expression: analysis tool of Gene Ontology terms with gene expression data. Genetics and Molecular Research. v. 5, n. 1, p. 108-114, 2006.Qualis: B3
35.	PEREIRA, T. V. ; Rudnichi, M ; SOLER, J. M. P. ; KRIEGER, J. E.. Meta-analysis of aspirin for the prevention of preeclampsia: do the main randomized controlled trials support an association between low-dose aspirin and a reduced risk of developing preeclampsia?. Clinics. v. 61, p. 179-182, 2006. Qualis: B4
36.	PONTES, E.R. ; MATOS, L.C. ; DA SILVA, E.A. ; XAVIER, L.S. ; DIAZ, B.L. ; SMALL, I.A. ; Reis, E.M. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; BARCINSKI, M.A. ; GIMBA, E.R.P.. Auto-antibodies in prostate cancer: Humoral immune response to antigenic determinants coded by the differentially expressed transcripts FLJ23438 and VAMP3. The Prostate (Print). v. 66, p. 1463-1473, 2006. Qualis: A2
37.	Reis LF ; SLUYS MAV. ; Garrat RC ; Pereira HM ; Teixeira MM. GMOs: building the future on the basis of past experience. Anais da Academia Brasileira de Ciências. v. 78, p. 667-686, 2006. Qualis: A2
38.	RIBEIRO-DOS-SANTOS, GABRIELA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; LEITE, LUCIANA C. C.. Schistosomiasis-a century searching for chemotherapeutic drugs. Parasitology Research (1987. Print). v. 99, p. 505-521, 2006. Qualis: Não identificado (PRINT))
39.	SACCARO-JUNIOR, N. L. ; SLUYS MAV. ; VARANI, A. M. ; ROSSI, M.. MudrA-like sequences from rice and sugarcane cluster as two bona fide transposon clades and two domesticated transposases.. Gene (Amsterdam). v. 6, p. in press, 2006. Qualis: A4
40.	SETUBAL, J. C. Lipoprotein computational prediction in spirochaetal genomes. Microbiology (Reading). v. 152, p. 113-121, 2006. Qualis: B1
41.	SILVA, A. M. DA ; AIDAR, M. P. M. ; BUCKERIDGE, M. S.. Caracterização parcial dos beta-glucanos ao longo do desenvolvimento foliar em Brachiaria decumbens Stapf. Hoehnea (São Paulo), São Paulo. v. 33, n. 1, p. 99-105, 2006.Qualis: Não identificado (HOEHNEA , SÃO PAULO)
42.	SOLER, J. M. P.; PEREIRA, A. C.. BiostatisticsTeaching in the New Genome Era. Proceedings of the Seventh International Conference on teaching Statistics. v. 4C, p. 1-5, 2006.Qualis: Não identificado (PROCEEDINGS OF THE SEVENTH INTERNATIONAL CONFERENCE ON TEACHING STATISTICS)
43.	SOLER, J. M. P.; PEREIRA, A. C. ; TÔRRES, C. H. ; KRIEGER, J. E.. Gene by environment QTL mapping through multiple trait analyses in blood pressure salt-sensitivity: identification of a novel QTL in rat chromosome 5. BMC Medical Genetics. v. 22, p. 10.1186/1471-23, 2006.Qualis: A4
44.	TINÉ, M. A. S. ; SILVA, C. O. ; LIMA, D. U. DE ; Carpita NC ; BUCKERIDGE, M. S.. Fine structure of a mixed-oligomer storage xyloglucan from seeds of Hymenaea courbaril. Carbohydrate Polymers, Irlanda. v. 66, p. 444-454, 2006. Qualis: Não identificado (CARBOHYDRATE POLYMERS, IRLANDA)
45.	TONINI, P. P. ; LISBOA, C. G. ; Frisch L ; Mercier, H. ; VIVEIROS, S. C. M. ; BUCKERIDGE, M. S.. Effect of abscisic acid on galactomannan degradation and endo-beta-mannanase activity in seeds of Sesbania virgata (Cav.) Pers.. Trees (Berlin). v. 20, p. 669-678, 2006. Qualis: A2
46.	Vencio, R.Z.N. ; KOIDE, T. ; Gomes, S. L. ; PEREIRA, CA. BayGO: Bayesian analysis of ontology term enrichment in microarray data.. BMC Bioinformatics. v. 7, p. 86, 2006. Qualis: A1
47.	VIBRANOVSKI, M. D.; SAKABE, N. J. ; de SOUZA, S. J.. A possible role of exon-shuffling in the evolution of signal peptides of human proteins. FEBS LETTERS. v. 580, n. 6, p. 1621-1624, 2006. Qualis: A2

2005

1.	ALTHAUS, Lilian Karenina ; ALBERTON, Geraldo Camilo ; GUIMARAES, A. M. S. ; FIAMETTI, Amarildo. Exame macroscópcio das articulações de suínos artríticos no abatedouro. Archives of Veterinary Science. v. 10, n. 1, p. 13-19, 2005.Qualis: B2
2.	Anghinah, R. ; Caramelli, P. ; Takahashi, D. Y. ; Nitrini, R. ; Sameshima, Koichi. Estudo da coerência do eletrencefalograma na banda de frequência alfa em indivíduos adultos normais: resultados preliminares em 10 casos. Arquivos de Neuro-Psiquiatria, São Paulo. v. 63, n. 1, p. 83-86, 2005. Qualis: Não identificado (ARQUIVOS DE NEURO-PSIQUIATRIA, SÃO PAULO)
3.	ARAÚJO, P. G. ; ROSSI, M. ; JESUS, Erika Maria de ; SACCARO-JUNIOR, N. L. ; KAJIHARA, D. ; et al ; CHABREGAS, S. M. ; ULIAN, E. C. ; MENOSSI, M. ; SLUYS MAV.. Transcriptionally active transposable elements in recent hybrid sugarcane.. Plant Journal. v. 44, n. 5, p. 707-717, 2005. Qualis: A1
4.	BERALDO, F. H ; ALMEIDA, F. M. ; DA SILVA, A. M. ; GARCIA, C.R.S.. Cyclic AMP and calcium interplay as second messengers in melatonin-dependent regulation of Plasmodium falciparum cell cycle. Journal of Cell Biology. v. 170, n. 4, p. 551-557, 2005. Qualis: A1 (THE JOURNAL OF CELL BIOLOGY)
5.	BRENTANI, RICARDO R. ; CARRARO, DIRCE MARIA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Reis, Eduardo M. ; NEVES, E. JORDÃO ; DE SOUZA, SANDRO J. ; CARVALHO, ALEX F. ; BRENTANI, Helena ; REIS, LUIZ F.L.. Gene expression arrays in Cancer Research: Methods and Applications.. Critical Reviews in Oncology/Hematology. v. 54, p. 95-105, 2005. Qualis: A1
6.	BUCKERIDGE, M. S.; HUTCHEON, I. ; REID, J. S. G.. The role of exo-(1-4)-beta-galactanase in the mobilisation of polysaccharides from the cotyledonary cell walls of Lupinus angustifolius L. following germination.. Annals of Botany. v. 96, p. 435-444, 2005. Qualis: A1
7.	Charchat-Fichman, H. ; Caramelli, P. ; Sameshima, K. ; Nitrini, R.. Declínio da capacidade cognitiva durante o envelhecimento. Revista Brasileira de Psiquiatria (São Paulo), Sao Paulo. v. 27, n. 12, p. 79-82, 2005. Qualis: Não identificado (REVISTA BRASILEIRA DE PSIQUIATRIA , SAO PAULO)
8.	CHEN, J. ; CIVEROLO, E. L. ; SLUYS MAV. ; OLIVEIRA, M. C.. Genetic Discovery in Xylella fastidiosa Through Sequence Analysis of Selected Randomly Amplified Polymorphic DNAs. Current Microbiology. v. 50, n. 2, p. 78-83, 2005. Qualis: B1
9.	DEMARCO, Ricardo ; MACHADO, ABIMAEL A. ; BISSON-FILHO, ALEXANDRE W. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Identification of 18 new transcribed retrotransposons in Schistosoma mansoni. Biochemical and Biophysical Research Communications (Print). v. 333, p. 230-240, 2005. Qualis: A3
10.	DURHAM, A. M.; FUJITA, A. ; MASSIRER, K. B. ; FERREIRA, C. E. ; SOGAYAR, M. C.. The GATO gene annotation tool for research laboratories. Brazilian Journal of Medical and Biological Research (Impresso). v. 38, n. 38, p. 1571-1574, 2005. Qualis: A4
11.	DURHAM, A. M.; KASHIWABARA, A. Y. ; MATSUNAGA, F. ; AHAGON, P. ; RAINONE, F. ; VARUZZA, L. ; GRUBER, A.. EGene: a configurable pipeline generation system for automated sequence analysis. BIOINFORMATICS, Bioinformatics Advance Access. v. 21, p. 2812-2813, 2005. Qualis: Não identificado (BIOINFORMATICS, BIOINFORMATICS ADVANCE ACCESS)
12.	FERRARI, Deborah Viviane ; BEVILACQUA, Maria Cecilia ; COSTA, O. A. ; Sameshima, K. ; TANAMATI, Liége Franzini. Telemetria de Respostas Neurais em Usuários de Implante Coclear. Revista da Sociedade Brasileira de Fonoaudiologia. v. 10, p. 172-177, 2005.Qualis: Não identificado (REVISTA DA SOCIEDADE BRASILEIRA DE FONOAUDIOLOGIA)
13.	Freitas, R.A. ; Martin, S. ; Santos, G.L. ; Valenga F. ; BUCKERIDGE, M. S. ; Reicher, F. ; Sierakowski, M.R.. Physico-chemical properties of seed xyloglucans from different sources. Carbohydrate Polymers. v. 60, n. 4, p. 507-514, 2005. Qualis: A1
14.	GIULIATTI, S.; FARIA JUNIOR, M. ; CAMARGO, F. ; CAMARGO, L. P. ; FRANÇA, S. C. ; SOARES, A. M.. An Algorithm to Classify Amino Acid Sequences into Protein Groups of Bothrops jararacussu Venomous Gland. Protein and Peptide Letters, Estados Unidos. v. 12, n. 4, p. 333-337, 2005. Qualis: Não identificado (PROTEIN AND PEPTIDE LETTERS, ESTADOS UNIDOS)
15.	GONCALVES, J. F. C. ; BARRETO, D. C. S. ; SANTOS JUNIOR, U. M. ; FERNANDES, A. V. ; SAMPAIO, P. T. B. ; BUCKERIDGE, M. S.. Growth, photosynthesis and stress indicators in young rosewood plants (Aniba rosaeodora Duck) under different light intensities. Brazilian Journal of Plant Physiology, Campinas. v. 17, n. 3, p. 325-334, 2005. Qualis: Não identificado (BRAZILIAN JOURNAL OF PLANT PHYSIOLOGY, CAMPINAS)
16.	GRANDBASTIEN, M. A. ; AUDEON, C. ; BONNIVARD, E. ; CASACUCERTA, J. M. ; CHALHOUB, B. ; COSTA, A. P. P. ; et al ; SLUYS MAV. ; MIHRI, C.. Stress Activation And Genomic Impact Of Tnt1 Retrotransposons In Solanaceae. Cytogenetic and Genome Research. v. 110, n. 1-4, p. 229-241, 2005. Qualis: A4
17.	HANCE, M. E. ; Czar, M. J. ; Azad, Abdu F. ; Purkayastha, A. ; Snyder, Eric E. ; Crasta, O. R. ; SETUBAL, J. C. ; Sobral, B. W.. The Pathogen Resource Integration Center: Implications for Rickettsial Research. Annals of the New York Academy of Sciences. v. 1063, p. 459-465, 2005. Qualis: A1
18.	HÜNEMEIER, T.; NEVES, A. G. ; SALZANO, F. M. ; NORBERG, I. ; HILL, K. ; HURTADO, A. M. ; CARNESE, F. R. ; GOICOECHEA, A. S. ; Hutz, M. ; Chies, JAB. T-Cell and chemokine receptor variation in South Amerindian populations. American Journal of Human Biology. v. 17, p. 515-518, 2005. Qualis: A1
19.	LEVANOGARCIA, Julio ; Verjovski-Almeida, S. ; DASILVA, Ana C R. Mapping transposon insertion sites by touchdown PCR and hybrid degenerate primer.. BioTechniques. v. 38, p. 225-229, 2005.Qualis: A4
20.	LIMA, W. ; SLUYS MAV. ; MENCK, C. F. M.. Non-gamma-proteobacteria gene islands contribute to the Xanthomonas genome. Journal of Integrative Biology / Omics (Larchmont). v. 9, n. 2, p. 160-172, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS)
21.	Martins, M.C.M. ; VIEIRA, C. C. J. ; SILVA, C. O. ; BUCKERIDGE, M. S.. Carboidratos na bebida do café preparado sob diferentes processos. Ciência e Tecnologia de Alimentos. v. 25, n. 2, p. 382-386, 2005. Qualis: B1 (CIENCIA E TECNOLOGIA DE ALIMENTOS)
22.	MONTEIROVITORELLO, C B ; OLIVEIRA, Mariana Cabral de ; ZERILLO, M. M. ; VARANI, A. M. ; CIVEROLO, E. L. ; SLUYS MAV.. Xylella and Xanthomonas mobil`omics. Journal of Integrative Biology / Omics (Larchmont). v. 9, n. 2, p. 146-159, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS)
23.	Moreira, Leandro M. ; De Souza, Robson F. ; Digiampietri, Luciano A. ; Da Silva, Ana C.R. ; Setubal, Joao C.. Comparative Analyses of Xanthomonas and Xylella Complete Genomes. Journal of Integrative Biology / Omics (Larchmont). v. 9, n. 1, p. 43-76, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS)
24.	MORGANTE, P. G. ; BERRA, C. ; NAKABASHI, M. ; COSTA, R. ; MENCK, C. F. M. ; SLUYS MAV.. Functional XPB/RAD25 redundancy in Arabidopsis genome: characterization of AtXPB2 and expression analysis.. Gene (Amsterdam), Holanda. v. 344, p. 93-103, 2005. Qualis: Não identificado (GENE , HOLANDA)
25.	PAPINI-TERZI, Flavia ; ROCHA, Flavia R. ; VENCIO, Ricardo Z. N. ; OLIVEIRA, Katia C. ; FELIX, Juliana M. ; VINCENTINI, Renato ; ROCHA, Cristiane S. ; SIMÕES, Ana Carolina Quirino ; ULIAN, Eugenio C. ; Di MAURO, Sônia M.Z. ; DA SILVA, A. M. ; PEREIRA, Carlos A. B. ; MENOSSI, Marcelo ; SOUZA, Glaucia Mendes. Transcription profiling of signal transduction-related genes in sugarcane tissues.. DNA Research. v. 12, n. 1, p. 27-38, 2005. Qualis: A1
26.	PASHALIDIS, Stefano ; MOREIRA, Leandro M. ; ZAINI, Paulo A. ; CAMPANHARO, Joao C ; ALVES, Lucia M C ; CIAPINA, Luciane P ; VENCIO, Ricardo Z. N. ; LEMOS, Eliana G M ; DA SILVA, A. M. ; DA SILVA, Ana C. R.. Whole-genome expression Profiling of Xylella fastidiosa in response to growth on glucose.. OMICS: Journal of Integrative Biology. v. 9, p. 77-90, 2005. Qualis: Não identificado (OMICS: JOURNAL OF INTEGRATIVE BIOLOGY)
27.	PAULA, A. C. C. F. ; Souza, R.V. ; FIGUEIREDO-RIBEIRO, R. C. L. ; BUCKERIDGE, M. S.. Hypoglycemic activity of polysaccharide fractions containing b-glucan in different parts of plants of Rhynchelytrum repens (Willd.) C. E. Hubb., Poaceae. Brazilian Journal of Medical and Biological Research. v. 38, n. 6, p. 885-893, 2005. Qualis: A4
28.	Reis, E. M. ; OJOPI, Elida ; ALBERTO, Fernando L ; RAHAL, Paula ; TSUKUMO, Fernando ; MANCINI, Ulises M ; GUIMARAES, Gustavo S ; THOMPSON, Gloria M A ; CAMACHO, Cleber ; MIRACCA, Elisabete ; CARVALHO, Andre L ; MACHADO, Abimael A ; PAQUOLA, Apua ; CERUTTI, Janette ; DA SILVA, A. M. ; PEREIRA, Gonçalo G ; VALENTINI, Sandro R ; KOWALSKI, Luiz P ; VERJOVSKI-ALMEIDA, Sergio ; TAJARA, Eloiza H. Large-scale transcriptome analyses reveal new genetic marker candidates of head, neck and thyroid cancer.. Cancer Research (Chicago, Ill.). v. 65, p. 1693-1699, 2005. Qualis: A1
29.	Reis, Eduardo M. ; LOURO, Rodrigo ; NAKAYA, HELDER I. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. As Antisense RNA Gets Intronic. Journal of Integrative Biology / Omics (Larchmont), New Rochelle, NY. v. 9, n. 1, p. 2-12, 2005. Qualis: Não identificado (JOURNAL OF INTEGRATIVE BIOLOGY / OMICS , NEW ROCHELLE, NY)
30.	RIBEIRO, D. ; FARIAS, L. P. ; ALMEIDA, J. D. ; KASHIWABARA, P. M. ; RIBEIRO, A. F. C. ; SILVA FILHO, M. C. ; MENCK, C. F. M. ; SLUYS MAV.. Functional characterization of the thi1 promoter region from Arabidopsis thaliana. Journal of Experimental Botany. v. 56, n. 417, p. 1797-1804, 2005. Qualis: A1
31.	SAMAIA, H. B.; GOMES, L. I. ; ESTEVES, G. H. ; CARVALHO, A. F. ; CRISTO, E. B. ; HIRATA JÚNIOR, R. ; MARQUES, S. M. ; CAMARGO, L. P. ; PELOSOF, A. ; ZITRON, C. ; SALLUM, R. A. ; MONTAGNINI, A. ; SOARES, F. A. ; NEVES, E. J. ; REIS, L. F. L.. Expression Profile of Malignant and Nonmalignant Lesions of Esophagus and Stomach: Differential Activity of Functional Modules Related to Inflammation and Lipid Metabolism. Cancer Research (Chicago, Ill.). v. 65, p. 7127-7136, 2005. Qualis: A1
32.	SAMAIA, H. B.; PATRÃO, D. F. C. ; CARRARO, D. M. ; SOARES, F. A. ; FOLGUEIRA, M. A. A. K. ; BRENTANI, M. M. ; REIS, L. F. L. ; CAMARGO, L. P. ; VÊNCIO, R. Z. N. ; BARBOSA, E. M.. Gene expression profile associated with response to doxorubicin-based therapy in breast cancer. Clinical Cancer Research, eua. v. 15, n. 11, p. 7434-7443, 2005.Qualis: A1 (CLINICAL CANCER RESEARCH)
33.	Sameshima, K.; Takahashi, D. Y. ; Baccalá, L. A.. Avaliando a complexidade da dinâmica cardiovascular por entropia amostral. Revista Brasileira de Hipertensão, Ribeirão Preto. v. 12, n. 1, p. 27-32, 2005.Qualis: Não identificado (REVISTA BRASILEIRA DE HIPERTENSÃO, RIBEIRÃO PRETO)
34.	SETUBAL, J; MOREIRA, L ; DASILVA, A. Bacterial phytopathogens and genome science. Current Opinion in Microbiology. v. 8, p. 595-600, 2005. Qualis: A1
35.	SILVA, P. J. S. ; HASHIMOTO, R. F. ; KIM, S. ; BARRERA, J. ; BRANDAO, L. O. ; SUH, E. ; DOUGHERTY, E. R.. Feature Selection Algorithms to Find Strong Genes. Pattern Recognition Letters. v. 26, n. 10, p. 1444-1453, 2005. Qualis: A2
36.	SIMOES, Ana C ; DASILVA, Aline M ; Verjovski-Almeida, S. ; REIS, Eduardo M. SAM Method as an Approach to Select Candidates for Human Prostate Cancer Markers. Lecture Notes In Bioinformatics. v. 3594, p. 202-205, 2005.Qualis: Não identificado (LECTURE NOTES IN BIOINFORMATICS)
37.	STOLF, B. S. ; ABREU, C. M. ; ARAUJO, M. B. M. ; DELLAMANO, M. ; MARTINS, W. K. ; CARVALHO, M. B. ; CURADO, M. P. ; DÍAZ, J. P. ; FABRI, A. ; SAMAIA, H. B. ; CARVALHO, A. F. ; SOARES, F. A. ; KOWALSKI, L. P. ; HIRATA JÚNIOR, R. ; REIS, L. F. L.. Expression profile of malignant and non-malignant diseases of the thyroid gland reveals altered expression of a common set of genes in goiter and papillary carcinomas.. Cancer Letters. v. 227, p. 59-73, 2005. Qualis: A1
38.	TORRES, TATIANA TEIXEIRA; AZEREDO-ESPIN, A.M.L.. Development of new polymorphic microsatellite markers for the New World screw-worm Cochliomyia hominivorax (Diptera: Calliphoridae). Molecular Ecology Notes. v. 5, p. 815-817, 2005. Qualis: Não identificado (MOLECULAR ECOLOGY NOTES)
39.	VENANCIO, Thiago M ; DEMARCO, Ricardo ; OLIVEIRA, Katia Cp ; SIMOES, Ana C ; DASILVA, Aline M ; Verjovski-Almeida, S.. Genomics and Gene Expression Management Tools for the Schistosoma Mansoni cDNA Microarray Project. Lecture Notes In Bioinformatics. v. 3594, p. 198-201, 2005.Qualis: Não identificado (LECTURE NOTES IN BIOINFORMATICS)
40.	Vencio, R.Z.N. ; KOIDE, T.. HTself: Self-Self Based Statistical Test for Low Replication Microarray Studies.. DNA Research. v. 12, p. 211-214, 2005. Qualis: A1
41.	VIBRANOVSKI, M. D.; SAKABE, N. J. ; OLIVEIRA, R. S. ; de SOUZA, S. J.. Signs of Ancient and Modern Exon-Shuffling Are Correlated to the Distribution of Ancient and Modern Domains Along Proteins. JOURNAL OF MOLECULAR EVOLUTION, Estados Unidos. v. 61, n. 3, p. 341-350, 2005. Qualis: Não identificado (JOURNAL OF MOLECULAR EVOLUTION, ESTADOS UNIDOS)

2004

1.	Baccalá, L. A. ; Alvarenga, M. Y. ; Sameshima, K. ; Jorge, C. L. ; Castro, L. H. M.. Graph theoretical characterization and tracking of neural connectivity during episodes of mesial temporal epileptic seizures. Journal of Integrative Neuroscience, Imperial College Press. v. 3, n. 4, p. 379-395, 2004. Qualis: Não identificado (JOURNAL OF INTEGRATIVE NEUROSCIENCE, IMPERIAL COLLEGE PRESS)
2.	BARRERA, J. ; CESAR JUNIOR, R. M. ; FERREIRA, J. E. ; GUBITOSO, M. D.. An environment for knowledge discovery in biology. COMPUTERS IN BIOLOGY AND MEDICINE, Washington, DC ,USA, July 2004. v. 34, n. 5, p. 371-459, 2004.Qualis: Não identificado (COMPUTERS IN BIOLOGY AND MEDICINE, WASHINGTON, DC ,USA, JULY 2004)
3.	BRAGA-NETO, U. ; HASHIMOTO, R. F. ; DOUGHERTY, E. R. ; NGUYEN, D. V. ; CARROLL, R. J.. Is Cross-Validation Better than Resubstitution for Ranking Genes. Bioinformatics (Oxford). v. 20, n. 2, p. 253-258, 2004. Qualis: A1
4.	BUCKERIDGE, M. S.; RAYON, C. ; URBANOWICZ, B. ; TINÉ, M. A. S. ; Carpita NC. Mixed Linkage (1→3),(1→4)-β- d -Glucans of Grasses. Cereal Chemistry, Saint Paul. v. 81, n. 1, p. 115-127, 2004. Qualis: Não identificado (CEREAL CHEMISTRY, SAINT PAUL)
5.	Carraro, D. M. ; Sredni, S.T. ; Maschietto, M. ; CASTRO, N. P. ; De Camargo, B. ; BRENTANI, H. P.. Applications of Microarray Technology in Clinic Oncology. Bioscience Journal (UFU. Impresso), Uberlândia, MG, Brazil. v. 20, n. Supplement, p. 53-58, 2004.Qualis: Não identificado (IMPRESSO), UBERLÂNDIA, MG, BRAZIL)
6.	DEMARCO, R. ; KOWALTOWSKI, A. T. ; MACHADO, A. A. ; SOARES, M. B. ; GARGIONI, C. ; KAWANO, T. ; RODRIGUES, V. ; MADEIRA, A. M. B. N. ; Wilson, R. A. ; MENCK, C. F. M. ; SETUBAL, J. C. ; DIAS-NETO, E. ; LEITE, L. C. C. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Saci-1, -2, and -3 and Perere, Four Novel Retrotransposons with High Transcriptional Activities from the Human Parasite Schistosoma mansoni. Journal of Virology, estados unidos. v. 78, n. 6, p. 2967-2978, 2004. Qualis: Não identificado (JOURNAL OF VIROLOGY, ESTADOS UNIDOS)
7.	FERNANDEZ, S. ; KATSUYAMA, A. M. ; KASHIWABARA, A. Y. ; MADEIRA, A. M. B. N. ; DURHAM, A. M. ; GRUBER, A.. Characterization of SCAR markers of spp. of domestic fowl and construction of a public relational database (The SCARdb). FEMS MICROBIOLOGY LETTERS, Estados Unidos. v. 238, n. 1, p. 183-188, 2004. Qualis: Não identificado (OF DOMESTIC FOWL AND CONSTRUCTION OF A PUBLIC RELATIONAL DATABASE . FEMS MICROBIOLOGY LETTERS, ESTADOS UNIDOS)
8.	FerrariI, D. V. ; Sameshima, K. ; Costa Filho, O. A. ; Bevilacqua, M. C.. A telemetria de respostas neurais no sistema de implante coclear multicanal nucleus 24: revisão da literatura. Revista Brasileira de Otorrinolaringologia (Impresso), São Paulo, SP. v. 70, n. 1, p. 112-118, 2004. Qualis: Não identificado (REVISTA BRASILEIRA DE OTORRINOLARINGOLOGIA , SÃO PAULO, SP)
9.	FIETTO, JULIANA L.R. ; DEMARCO, Ricardo ; NASCIMENTO, IVAN P. ; CASTRO, IESO M. ; CARVALHO, TÉCIA M.U. ; DE SOUZA, WANDERLEY ; Bahia, Maria T. ; ALVES, MARIA J.M. ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Characterization and immunolocalization of an NTP diphosphohydrolase of Trypanosoma cruzi. Biochemical and Biophysical Research Communications (Print). v. 316, p. 454-460, 2004. Qualis: A3
10.	HASHIMOTO, R. F.; KIM, S. ; SHMULEVICH, Ilya ; ZHANG, Wei ; BITTNER, M. L. ; DOUGHERTY, E. R.. Growing Genetic Regulatory Networks from Seed Genes. Bioinformatics (Oxford), Grã-Bretanha. v. 20, n. 8, p. 1241-1247, 2004. Qualis: Não identificado (BIOINFORMATICS , GRÃ-BRETANHA)
11.	HÜNEMEIER, T.; Chies, JAB ; NARDI, N. B. ; CRUZ, I. M. ; PERES, A.. T-cell receptor BV gene segment polymorphisms in healthy elderly individuals from the south of Brazil.. European Journal of Immunogenetics, Inglaterra. v. 31(2), p. 77-81, 2004.Qualis: Não identificado (EUROPEAN JOURNAL OF IMMUNOGENETICS, INGLATERRA)
12.	JUNQUEIRA, A.C.M. ; LESSINGER, A.C. ; TORRES, T.T. ; VETTORE, A.L. ; SILVA, F.R. ; ARRUDA, P. ; AZEREDO-ESPIN, A.M.L.. The mitochondrial genome of the blowfly Chrysomya chloropyga (Diptera: Calliphoridae).. Gene (Amsterdam), Holanda. v. 339, p. 7-15, 2004. Qualis: Não identificado (GENE , HOLANDA)
13.	Kashima, Simone ; Roberto, Patrí­cia G. ; Soares, Andreimar M. ; Astolfi-Filho, Spartaco ; Pereira, José O. ; Giuliati, Silvana ; Jr., Milton Faria ; Xavier, Mauro A.S. ; Fontes, Marcos R.M. ; Giglio, José R. ; França, Suzelei C.. Analysis of Bothrops jararacussu venomous gland transcriptome focusing on structural and functional aspects11All sequence data reported in this paper will appear in the GenBank database under the following accession numbers: BOJU-I (AY 185200), BOJU-II (AY 185206), BOJU-III (AY 145836), BOJUMET-I (AY 55005), BOJUMET-II (AY 25584), BOJUMET-III (AY 258153), C-type lectin (AY 251283), serine-protease. Biochimie (Paris. Print). v. 86, p. 211-219, 2004. Qualis: Não identificado (PRINT))
14.	KOIDE, T.; da Silva Neto, J. F. ; Gomes, S. L. ; MARQUES, M. V.. Insertional transposon mutagenesis in the Xylella fastidiosa Citrus Variegated Chlorosis strain with transposome.. Current Microbiology. v. 48, p. 247-250, 2004. Qualis: B1
15.	KOIDE, T. ; ZAINI, P. A. ; MOREIRA, L. M. ; VENCIO, R. Z. N. ; MATSUKUMA, A. Y. ; DURHAM, A. M. ; TEIXEIRA, D. C. ; EL-DORRY, H. ; MONTEIRO, P. B. ; DA SILVA, A. C. R. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; da SILVA, A. M. ; GOMES, S. L.. DNA microarray-based genome comparison of a pathogenic and a nonpathogenic strain of Xylella fastidiosa delineates genes important for bacterial virulence.. Journal of Bacteriology (Print). v. 186, p. 5442-5449, 2004. Qualis: A3
16.	LIMA, D. U. DE ; Loh, W. ; BUCKERIDGE, M. S.. Xyloglucan?cellulose interaction depends on the sidechains and molecular weight of xyloglucan. Plant Physiology and Biochemistry (Paris), França. v. 42, n. 5, p. 389-394, 2004. Qualis: Não identificado (PLANT PHYSIOLOGY AND BIOCHEMISTRY , FRANÇA)
17.	LOURO, Rodrigo ; NAKAYA, HELDER I. ; PAQUOLA, APUÃ C.M. ; MARTINS, ELIZABETH A.L. ; SILVA, ALINE M.DA ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S. ; Reis, Eduardo M.. RASL11A, member of a novel small monomeric GTPase gene family, is down-regulated in prostate tumors.. Biochemical and Biophysical Research Communications, Estados Unidos. v. 316, n. 3, p. 618-627, 2004. Qualis: A3 (BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS)
18.	MAYWORM, M. A. S. ; Salatino A ; BUCKERIDGE, M. S.. Chemical composition of seeds of Peltophorum dubium Vog., a legume tree from the Brazilian Caatinga with potential for sustainable use of biodiversity in semi-arid regions. Hoehnea (São Paulo), São Paulo. v. 31, n. 2, p. 175-179, 2004.Qualis: Não identificado (HOEHNEA , SÃO PAULO)
19.	MENEZES, Luis F C ; CAI, Yiqiang ; NAGASAWA, Yasuyuki ; SILVA, Ana M G ; WATKINS, Mary Lou ; DA SILVA, A. M. ; SOMLO, Stefan ; WOODFORD, Lisa M Guay ; GERMINO, Gregory G ; ONUCHIC, Luiz F. Polyductin, the PKHD1 gene product, comprises isoforms expressed in plasma membrane, primary cilium and cytoplasm. Kidney International, Estados Unidos da América. v. 66, n. 4, p. 1345-1355, 2004. Qualis: Não identificado (KIDNEY INTERNATIONAL, ESTADOS UNIDOS DA AMÉRICA)
20.	MONTEIRO-VITORELLO, Claudia B. ; Camargo, Luis E. A. ; Van Sluys, Marie A. ; Kitajima, João P. ; Truffi, Daniela ; do Amaral, Alexandre M. ; Harakava, Ricardo ; de Oliveira, Julio C. F. ; Wood, Derek ; de Oliveira, Mariana C. ; Miyaki, Cristina ; Takita, Marco A. ; da Silva, Ana C. R. ; Furlan, Luis R. ; Carraro, Dirce M. ; Camarotte, Giovana ; Almeida, Nalvo F. ; Carrer, Helaine ; Coutinho, Luiz L. ; SETUBAL, J. C. ; et.al. The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli. Molecular Plant-Microbe Interactions. v. 17, n. 8, p. 827-836, 2004. Qualis: A1
21.	SETUBAL, J. C.; SILVA, Ana Claudia Rasera da ; ALMEIDA JR, Nalvo Franco de ; FERRO, Jesus ; FURLAN, Luiz Roberto ; MOREIRA, Leandro ; SOUZA, Robson de ; OLIVEIRA, Julio Cezar de. COMPARATIVE GENOMICS ANALYSES OF CITRUS-ASSOCIATED BACTERIA. Annual Review of Phytopathology (Print), Estados Unidos. v. 42, p. 163-184, 2004. Qualis: Não identificado (ANNUAL REVIEW OF PHYTOPATHOLOGY , ESTADOS UNIDOS)
22.	NASCIMENTO, A. L. T. O. ; KO, A. I. ; MARTINS, E. A. L. ; MONTEIRO-VITORELLO, C. B. ; HO, P. L. ; HAAKE, D. A. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S. ; HARTSKEERL, R. A. ; MARQUES, M. V. ; OLIVEIRA, M. C. ; MENCK, C. F. M. ; LEITE, L. C. C. ; CARRER, H. ; COUTINHO, L. L. ; DEGRAVE, W. M. ; DELLAGOSTIN, O. A. ; EL-DORRY, H. ; FERRO, E. S. ; FERRO, M. I. T. ; et.al. Comparative genomics of two Leptospira interrogans serovars reveals novel insights into physiology and pathogenesis.. Journal of Bacteriology, estados unidos. v. 186, n. 7, p. 2164-2172, 2004. Qualis: Não identificado (JOURNAL OF BACTERIOLOGY, ESTADOS UNIDOS)
23.	SETUBAL, J. C.; NASCIMENTO, Ana Lucia Tabet ; VERJOVSKI-ALMEIDA, Sergio ; SLUYS, Marie Anne Van ; MONTEIRO-VITORELLO, Claudia B. ; CAMARGO, Luis Eduardo Aranha ; DIGIAMPIETRI, Luciano A. ; HARTSKEERL, Rudy ; HO, Paulo Lee ; MARQUES, Marilis ; OLIVEIRA, Mariana Cabral de ; HAAKE, David ; MARTINS, Elizabeth. Genome features of Leptospira interrogans serovar Copenhageni.. Brazilian Journal of Medical and Biological Research. v. 37, n. 4, p. 459-477, 2004. Qualis: A4
24.	OIKAWA, M. K. ; BROINIZI, M. E. ; DERMAGOS, A. ; ARMELIN, H. A. ; FERREIRA, J. E.. GenFlow: generic flow for integration, management and analysis of molecular biology data. GENETICS AND MOLECULAR BIOLOGY, http://www.scielo.br/. v. 27, n. 4, p. 691-695, 2004. Qualis: Não identificado (GENETICS AND MOLECULAR BIOLOGY, HTTP://WWW.SCIELO.BR/)
25.	REIS, Eduardo M ; NAKAYA, Helder I ; LOURO, Rodrigo ; CANAVEZ, Flavio C ; FLATSCHART, ÁUREA V F ; ALMEIDA, Giulliana T ; EGIDIO, Camila M ; PAQUOLA, Apuã C ; MACHADO, Abimael A ; FESTA, Fernanda ; YAMAMOTO, Denise ; ALVARENGA, Renato ; DA SILVA, CAMILLE C ; BRITO, Glauber C ; SIMON, Sérgio D ; MOREIRA-FILHO, CARLOS A ; LEITE, Katia R ; CAMARA-LOPES, Luiz H ; CAMPOS, Franz S ; Verjovski-Almeida, S. ; et.al. Antisense intronic non-coding RNA levels correlate to the degree of tumor differentiation in prostate cancer. Oncogene (Basingstoke). v. 23, n. 39, p. 6684-6692, 2004. Qualis: A1
26.	ROSSI, M. ; ARAÚJO, P. G. ; JESUS, Erika Maria de ; VARANI, A. M. ; SLUYS MAV.. Comparative analysis of sugarcane Mutator-like transposases. Molecular Genetics and Genomics. v. 272, p. 194-203, 2004. Qualis: A4
27.	SAKABE, N. J. ; VIBRANOVSKI, M. D. ; de SOUZA, S. J.. A bioinformatics analysis of alternative exon usage in human genes coding for extracellular matrix proteins. GENETICS AND MOLECULAR RESEARCH, Brasil. v. 3, n. 4, p. 532-544, 2004.Qualis: Não identificado (GENETICS AND MOLECULAR RESEARCH, BRASIL)
28.	Santos HP ; BUCKERIDGE, M. S.. The role of the storage carbon of cotyledons in the establishment of seedlings of Hymenaea courbaril L. under different light conditions. Annals of Botany, Bristol. v. 94, n. 6, p. 819-830, 2004. Qualis: Não identificado (ANNALS OF BOTANY, BRISTOL)
29.	SANTOS, H. P. DOS ; Purgatto, E. ; Mercier, H. ; BUCKERIDGE, M. S.. The Control of Storage Xyloglucan Mobilisation in Cotyledons of Hymenaea courbaril L.. PLANT PHYSIOLOGY, Estados Unidos. v. 135, n. 5, p. 287-299, 2004. Qualis: Não identificado (PLANT PHYSIOLOGY, ESTADOS UNIDOS)
30.	SOLER, J. M. P.; ROSA, F. H. F. P. ; CHIAVEGATTO, S. ; ANEAS, I. ; KRIEGER, J. E.. Use of Splines for Normalization of Microarray Gene Expression Data. Bioscience Journal, Especial,. p. 101-116, 2004.Qualis: Não identificado (BIOSCIENCE JOURNAL, ESPECIAL,)
31.	SOUZA, G. M. ; BUCKERIDGE, M. S.. Sistemas complexos: novas formas de ver a Botânica. Brazilian Journal of Botany, São Paulo. v. 27, n. 3, p. 407-419, 2004. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)
32.	The Ludwig_FAPESP Transcript Finishing Initiative ; SOGAYAR, M. C. ; CAMARGO, A. A. ; Giuliatti, S.. A Transcript Finishing Initiative for Closing Gaps in the Human Transcriptome. Genome Research. v. 14, p. 1413-1423, 2004. Qualis: A1
33.	TORRES, T.T.; BRONDANI, R.P.V. ; GARCIA, J.E. ; AZEREDO-ESPIN, A.M.L.. Isolation and characterization of microsatellite markers in the New World screw-worm Cochliomyia hominivorax (Diptera: Calliphoridae). Molecular Ecology Notes. v. 4, p. 182-184, 2004. Qualis: Não identificado (MOLECULAR ECOLOGY NOTES)
34.	Verjovski-Almeida, S.; DEMARCO, Ricardo. Genoma contra a esquistossomose. Scientific American Brasil, São Paulo. v. 28, p. 54-61, 2004.Qualis: Não identificado (SCIENTIFIC AMERICAN BRASIL, SÃO PAULO)
35.	Verjovski-Almeida, S.; Verjovski-Almeida, Sergio ; LEITE, LUCIANA C.C. ; DIAS-NETO, EMMANUEL ; MENCK, CARLOS F.M. ; WILSON, R.ALAN. Schistosome transcriptome: insights and perspectives for functional genomics. Trends in Parasitology. v. 20, p. 304-308, 2004. Qualis: A1
36.	VINCENTZ, Michel ; CARA, F A ; OKURA, V K ; SILVA, F R da ; et al ; SLUYS MAV. ; NOBREGA, Francisco Gorgonio da ; ARRUDA, Paulo ; MENCK, Carlos Frederico Martins. Evaluation of monocot and eudicot divergence using the sugarcane transcriptome.. Plant Physiology (Bethesda). v. 134, n. 3, p. 951-959, 2004. Qualis: A1
37.	VÊNCIO, R. Z. N. ; SAMAIA, H. B. ; PATRÃO, D. F. C. ; PEREIRA, C. A. B.. Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE). BMC Bioinformatics. v. 31, n. 5, p. 119, 2004. Qualis: A1
38.	XU, PING ; WIDMER, GIOVANNI ; WANG, YINGPING ; OZAKI, LUIZ S. ; Alves, Joao M. ; Serrano, Myrna G. ; PUIU, DANIELA ; MANQUE, PATRICIO ; AKIYOSHI, DONNA ; MACKEY, AARON J. ; PEARSON, WILLIAM R. ; DEAR, PAUL H. ; BANKIER, ALAN T. ; PETERSON, DARRELL L. ; ABRAHAMSEN, MITCHELL S. ; KAPUR, VIVEK ; TZIPORI, SAUL ; Buck, Gregory A.. The genome of Cryptosporidium hominis. Nature (London). v. 431, p. 1107-1112, 2004. Qualis: A1

2003

1.	ANDRIOLI, Luiz Paulo M. ; ZAINI, Paulo A. ; Viviani W ; DA SILVA, A. M.. Dictyostelium discoideum protein phosphatase-1 catalytic subunit exhibits distinct biochemical properties. Biochemical Journal (London. 1984). v. 373, n. 3, p. 703-711, 2003. Qualis: Não identificado (1984))
2.	CARVALHO, A. BERNARDO ; D. Vibranovski, Maria ; W. CARLSON, JOSEPH ; E. CELNIKER, SUSAN ; A. HOSKINS, ROGER ; M. RUBIN, GERALD ; G. SUTTON, GRANGER ; D. ADAMS, MARK ; W. MYERS, EUGENE ; G. CLARK, ANDREW. Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?. GENETICA. v. 117, p. 227-237, 2003. Qualis: A3
3.	CHABREGAS, S. M. ; LUCHE, D. D. ; MENCK, Carlos Frederico Martins ; SLUYS MAV. ; SILVA FILHO, M. C.. Differential usage of two-frame translational start codons regulates subcellular localization of Arabidopsis thaliana THI 1. Journal of Cell Science. v. 116, p. 285-291, 2003. Qualis: A1
4.	DEGASPERI, M. I. ; ITAYA, N. M. ; BUCKERIDGE, M. S. ; FIGUEIREDO-RIBEIRO, R. C. L.. Fructan degradation and hydrolytic activity in tuberous roots of Viguiera discolor Baker (Asteraceae), a herbaceous species from the cerrado. Brazilian Journal of Botany, São Paulo. v. 26, n. 1, p. 11-21, 2003. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)
5.	DEMARCO, Ricardo ; KOWALTOWSKI, ANDRE T ; MORTARA, Renato A ; Verjovski-Almeida, Sergio ; Verjovski-Almeida, S.. Molecular characterization and immunolocalization of Schistosoma mansoni ATP-diphosphohydrolase. Biochemical and Biophysical Research Communications (Print). v. 307, p. 831-838, 2003. Qualis: A3
6.	Diego, V.P. ; Almasy, L. ; Dyer, T.D. ; SOLER, J. M. P. ; BLANGERO, J.. Strategy and model building in the fourth dimention: A null model for genotype x age interaction as a gaussian stationary stochastic process. BMC Genetic. 2003.Qualis: A3 (BMC GENETICS)
7.	Digiampietri, Luciano A ; MEDEIROS, Claudia Maria Bauzer ; Setubal, João C.. A data model for comparative genomics. Revista Tecnologia da Informação. v. 3, p. 35-40, 2003.Qualis: Não identificado (REVISTA TECNOLOGIA DA INFORMAÇÃO)
8.	DURHAM, A. M.; Emilio F. Merino ; FERNANDEZ-BECERRA, C. ; MADEIA, A. M. B. N. ; LIMA, A. M. ; GRUBER, A. ; Hernando A. del Portillo. Pilot survey of expressed sequence tags (ESTs) from the asexual blood stages of Plasmodium vivax in human patients. Malaria Journal (Online), Internet. v. 2, n. 21, p. 21, 2003. Qualis: Não identificado (MALARIA JOURNAL , INTERNET)
9.	HASHIMOTO, R. F.; BARRERA, J.. A Greedy Algorithm for Decomposing Convex Structuring Elements. Journal of Mathematical Imaging and Vision, USA. v. 18, n. 3, p. 269-289, 2003. Qualis: A1 (JOURNAL OF MATHEMATICAL IMAGING AND VISION)
10.	HASHIMOTO, R. F.; DOUGHERTY, E. R. ; Marcel Brun ; Zheng-Zheng Zhou ; BITTNER, M. L. ; TRENT, J. M.. Efficient Selection of Feature Sets Possessing High Coefficients of Determination Based on Incremental Determinations. Signal Processing. v. 83, n. 4, p. 695-712, 2003. Qualis: A1
11.	Lima, D U ; Oliveira, R.C. ; BUCKERIDGE, M. S.. Seed storage hemicelluloses as wet-end additives in papermaking. Carbohydrate Polymers, Irlanda. v. 52, n. 4, p. 367-373, 2003. Qualis: Não identificado (CARBOHYDRATE POLYMERS, IRLANDA)
12.	MADEIRA, L. ; DEMARCO, R. ; GAZARINI, M. ; Verjovski-Almeida, S. ; GARCIA, C.. Human Malaria Parasites Display a Receptor for Activated C Kinase (RACK) Ortholog. Biochemical and Biophysical Research Communications (Print), USA. v. 306, p. 995-1001, 2003.Qualis: A3 (BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS)
13.	PAPINITERZI, F. S. ; GALHARDO, R. ; FARIAS, L. P. ; MENCK, C. F. M. ; SLUYS MAV.. Point Mutation is Responsible for Arabidopsis tz-201 Mutant Phenotype Affecting Thiamin Biosynthesis.. Plant and Cell Physiology. v. 44, n. 8, p. 865-860, 2003.Qualis: A1
14.	PAQUOLA, A. C. M. ; NISHYIAMA, M. Y. ; REIS, E. M. ; da SILVA, A. M. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. ESTWeb: bioinformatics services for EST sequencing projects. Bioinformatics (Oxford. Print). v. 19, p. 1587-1588, 2003. Qualis: Não identificado (PRINT))
15.	PAQUOLA, A. C.M. ; MACHADO, A. A. ; REIS, E. M. ; da SILVA, A. M. ; Verjovski-Almeida, S. ; Verjovski-Almeida, S.. Zerg: a very fast BLAST parser library. Bioinformatics (Oxford. Print). v. 19, p. 1035-1036, 2003. Qualis: Não identificado (PRINT))
16.	PIAZZA, J. P. ; Setubal, João C. New ways for automatic detection of contaminants in EST projects. Revista Tecnologia da Informação. v. 3, p. 36-41, 2003.Qualis: Não identificado (REVISTA TECNOLOGIA DA INFORMAÇÃO)
17.	ROSSI, M. ; ARAÚJO, P. G. ; PAULET, F. ; GARSMEUR, O. ; VM Dias ; CHEN, H. ; SLUYS MAV. ; DHONT, A.. Genomic distribution and characterization of EST-derived resistance gene analogs (RGAs) in sugarcane.. Molecular Genetics and Genomics. v. 269, n. 3, p. 406-419, 2003. Qualis: A4
18.	SAKABE, N. J. ; SOUZA, J. E. S. ; GALANTE, P. A. F. ; OLIVEIR, P. S. L. ; PASSETTI, Fábio ; SAMAIA, H. B. ; OSÓRIO, E. C. ; ZAIATS, A. C. ; LEERKES, M. R. ; KITAJIMA, J. P. ; BRENTANI, R. R. ; STRAUSBERG, R. L. ; SIMPSON, A. J. G. ; DE SOUZA, S. J.. Orestes are enriched in exon variants affecting the encoded proteins. Comptes Rendus. Biologies. v. 326, p. 979-985, 2003. Qualis: Não identificado (BIOLOGIES)
19.	SAMAIA, H. B.; CABALLERO, O. L. D. ; CAMARGO, A. A. ; SILVA, A. M. ; SILVA, W. A. ; DIAS NETO, E. ; GRIVET, M. ; GRUBER, A. ; GUIMARÃES, P. E. M. ; HIDE, W. ; ISELI, C. ; JONGENEEL, C. V. ; KELSO, J. ; NAGAI, M. A. ; OJOPI, E. P. ; OSÓRIO, E. C. ; REIS, E. M. ; RIGGINS, G. J. ; SIMPSON, A. J. G. ; DE SOUZA, S. J. ; et.al. The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags. PNAS. Proceedings of the National Academy of Sciences of the United States of America. v. 100, p. 13418-13423, 2003. Qualis: A1
20.	SHMULEVICH, Ilya ; GLUHOVSKY, Ilya ; HASHIMOTO, R. F. ; DOUGHERTY, E. R. ; ZHANG, Wei. Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks. Comparative and Functional Genomics. v. 4, p. 601-608, 2003. Qualis: Não identificado (COMPARATIVE AND FUNCTIONAL GENOMICS)
21.	SLUYS MAV.; OLIVEIRA, Mariana Cabral de ; MONTEIROVITORELLO, C B ; MIYAKI, C. Y. ; FURLAN, L. R. ; CAMARGO, L E A ; SILVA, A. C. R. ; MOON, D. H. ; TAKITA, M. A. ; LEMOS, E. G. M. ; MACHADO, M. A. ; FERRO, M. I. T. ; SILVA, F R da ; GOLDMAN, M. H. S. ; GOLDMAN, G. H. ; LEMOS, M. V. F. ; DORRY, H. E. ; TSAI, S. M. ; CARRER, H. ; CARRARO, D. M. ; et.al. Comparative Analyses of the Complete Genome Sequences of Pierce's Disease and Citrus Variegated Chlorosis Strains of Xylella fastidiosa. Journal of Bacteriology, EUA. v. 185, n. 3, p. 1018-1026, 2003. Qualis: A3 (JOURNAL OF BACTERIOLOGY)
22.	SOLER, J. M. P.; BLANGERO, J.. Longitudinal Familial Analysis of Blood Pressure Involving Parametric (Co)variance Functions. BMC Genetic. 2003.Qualis: A3 (BMC GENETICS)
23.	SUDA, C. N. K. ; BUCKERIDGE, M. S. ; Giorgini, J.. Cell wall hydrolases in the seeds of Euphorbia heterophylla L. during germination and early seedling development.. Revista Brasileira de Fisiologia Vegetal, Campinas. v. 15, n. 3, p. 135-143, 2003. Qualis: Não identificado (REVISTA BRASILEIRA DE FISIOLOGIA VEGETAL, CAMPINAS)
24.	TINÉ, M. A. S. ; Lima, D U ; BUCKERIDGE, M. S.. Galactose branching modulates the action of cellulase on seed storage xyloglucans. Carbohydrate Polymers, Irlanda. v. 52, p. 135-141, 2003. Qualis: Não identificado (CARBOHYDRATE POLYMERS, IRLANDA)
25.	VERJOVSKI-ALMEIDA, Sergio ; DeMarco, Ricardo ; Martins, Elizabeth A L ; Guimarães, Pedro E M ; Ojopi, Elida P B ; Paquola, Apuã C M ; Piazza, João P ; Nishiyama, Milton Y ; Kitajima, João P ; Adamson, Rachel E ; Ashton, Peter D ; Bonaldo, Maria F ; Coulson, Patricia S ; Dillon, Gary P ; Farias, Leonardo P ; Gregorio, Sheila P ; Ho, Paulo L ; Leite, Ricardo A ; Malaquias, L Cosme C ; SETUBAL, J. C. ; et.al. Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nature Genetics, Reino Unido. v. 35, p. 148-157, 2003. Qualis: Não identificado (NATURE GENETICS, REINO UNIDO)
26.	VETTORE, A. L. ; da SILVA, F. R. ; KEMPER, E. L. ; SOUZA, G. M. ; DA SILVA, A. M. ; FERRO, M. I. T. ; HENRIQUE-SILVA, F. ; GIGLIOTI, E. A. ; LEMOS, M. V. F. ; Coutinho, L. L. ; NOBREGA, M. P. ; Carrer, H. ; FRANCA, S. C. ; BACCI, M. ; GOLDMAN, M. H. S. ; GOMES, S. L. ; NUNES, L. R. ; Camargo, L. E. A. ; SIQUEIRA, W. J. ; VAN SLUYS, M. A.. Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane.. Genome Research. v. 13, n. 12, p. 2725-2735, 2003. Qualis: A1
27.	VÊNCIO, R. Z. N. ; SAMAIA, H. B. ; PEREIRA, C. A. B.. Using credibility intervals instead of hypothesis tests in SAGE analysis. BMC Bioinformatics. v. 19, p. 2461-2464, 2003. Qualis: A1
28.	Zaidan, E. ; Sameshima, K.. Desenvolvimento de listas de palavras foneticamente balanceadas para avaliação do processamento auditivo.. Pró-Fono, Barueri, SP. v. 15, n. 3, p. 307-316, 2003.Qualis: Não identificado (PRÓ-FONO, BARUERI, SP)

2002

1.	AIDAR, M. P. M. ; COSTA, P. F. ; MARTINEZ, C. A. ; DIETRICH, S. M. C. ; BUCKERIDGE, M. S.. Effect of atmospheric CO2 enrichment on the establishment of seedlings of jatobá, Hymenaea courbaril L. (Leguminosae, Caesalpinioideae). Biota Neotropica, Campinas. v. 2, n. 1, 2002.Qualis: Não identificado (BIOTA NEOTROPICA, CAMPINAS)
2.	BUCKERIDGE, M. S.; AIDAR, M. P. M.. Carbon sequestration in the rain forest: alternatives using environmentally friendly biotechnology. Biota Neotropica, Campinas. v. 2, n. 2, 2002.Qualis: Não identificado (BIOTA NEOTROPICA, CAMPINAS)
3.	da Silva Neto, J ; KOIDE, T.. Site-directed gene disruption in Xylella fastidiosa. FEMS Microbiology Letters. v. 210, n. 1, p. 105-110, 2002. Qualis: B2
4.	da Silva, A. C. R. ; Ferro, J. A. ; Reinach, F. C. ; Farah, C. S. ; Furlan, L. R. ; Quaggio, R. B. ; Monteiro-Vitorello, C. B. ; Sluys, M. A. Van ; Almeida, N. F. ; Alves, L. M. C. ; do Amaral, A. M. ; Bertolini, M. C. ; Camargo, L. E. A. ; Camarotte, G. ; Cannavan, F. ; Cardozo, J. ; Chambergo, F. ; Ciapina, L. P. ; Cicarelli, R. M. B. ; de SOUZA, Robson Francisco ; et.al. Comparison of the genomes of two Xanthomonas pathogens with differing host specificities. Nature (London), Estados Unidos. v. 417, n. 6887, p. 459-463, 2002. Qualis: Não identificado (NATURE , ESTADOS UNIDOS)
5.	FIETTO, J. L. R. ; DEMARCO, Ricardo ; Verjovski-Almeida, S.. Use of degenerate primers and touchdown PCR for construction of cDNA Libraries.. BioTechniques. v. 32, n. 6, p. 1404-1411, 2002.Qualis: A4
6.	HASHIMOTO, R. F.; BARRERA, J.. A Note on Park and Chin´s Algorithm. IEEE Transactions on Pattern Analysis and Machine Intelligence. v. 24, n. 1, p. 139-144, 2002. Qualis: Não identificado (IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE)
7.	HIRATA JR., R. ; BARRERA, J. ; HASHIMOTO, R. F. ; DANTAS, D. O. ; ESTEVES, G. H.. Segmentation of Microarray Images by Mathematical Morphology. Real-Time Imaging, USA. v. 8, n. 6, p. 491-505, 2002. Qualis: Não identificado (REAL-TIME IMAGING, USA)
8.	ISELI, C. ; DE SOUZA, S. J. ; SAMAIA, H. B. ; STEVENSON, B. J. ; CAMARGO, A. A. ; STRAUSBERG, R. L. ; BUETOW, K. H. ; SIMPSON, A. J. G. ; JONGENEEL, C. V.. Long-range heterogeneity at the 3´ end of human mRNAs. Genome Research. v. 12, p. 1068-1074, 2002. Qualis: A1
9.	MEIDANIS, J. ; BRAGA, M. ; Verjovski-Almeida, S.. Whole Genome Analysis of Transporters in the plant pathogen Xylella fastidiosa. Microbiology and Molecular Biology Reviews. v. 66, n. 6, p. 272-299, 2002.Qualis: Não identificado (MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS)
10.	POTOMATI, A. ; BUCKERIDGE, M. S.. Effect of abscisic acid on the mobilisation of galactomannan and embryo development of Sesbania virgata (Cav.) Pers. (Leguminosae - Faboideae). Brazilian Journal of Botany, São Paulo. v. 25, n. 3, p. 303-310, 2002. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)
11.	SETUBAL, J. C.; SILVA, Ana Claudia Rasera da ; SIMPSON, A. J. G. ; KITAJIMA, Joao Paulo ; FERRO, Jesus ; SLUYS, Marie Anne Van ; MONTEIRO-VITORELLO, Claudia B. ; CAMARGO, Luis Eduardo Aranha ; MENCK, Carlos F. M. ; OLIVEIRA, Mariana Cabral de. C OMPARATIVE G ENOMIC A NALYSIS OF P LANT -A SSOCIATED B ACTERIA. Annual Review of Phytopathology (Print), EUA. v. 40, p. 169-189, 2002. Qualis: A1 (ANNUAL REVIEW OF PHYTOPATHOLOGY)
12.	SLUYS MAV.; VITORELLO, C. B. M. ; CAMARGO, L E A ; MENCK, Carlos Frederico Martins ; SILVA, A. C. R. ; FERRO, J. A. ; OLIVEIRA, Mariana Cabral de ; SETUBAL, J. C. ; KITAJIMA, J. P. ; SIMPSON, A. J.. Comparative genomic analysis of plant-associated bacteria. Annual Review of Phytopathology (Print), Estados Unidos. v. 40, p. 169-189, 2002. Qualis: Não identificado (ANNUAL REVIEW OF PHYTOPATHOLOGY , ESTADOS UNIDOS)
13.	STANCATO, G. C. ; MAZZAFERA, P. ; BUCKERIDGE, M. S.. Effects of light stress on the growth of the epiphytic orchid Cattleya forbesii Lindl. X Laelia tenebrosa Rolfe. Brazilian Journal of Botany, São Paulo. v. 25, n. 2, p. 229-235, 2002. Qualis: Não identificado (BRAZILIAN JOURNAL OF BOTANY, SÃO PAULO)

2001

1.	ARAÚJO, P. G. ; CASACUCERTA, J. M. ; COSTA, A. P. P. ; HASHIMOTO, R. Y. ; GRANDBASTIEN, M. A. ; SLUYS MAV.. Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus. Molecular and General Genetics. v. 266, n. 1, p. 35-41, 2001. Qualis: Não identificado (MOLECULAR AND GENERAL GENETICS)
2.	Baccalá, L. A. ; Sameshima, K.. Partial directed coherence a new concept in neural structure determination. Biological Cybernetics, Berlim. v. 84, n. 6, p. 463-474, 2001. Qualis: Não identificado (BIOLOGICAL CYBERNETICS, BERLIM)
3.	Baccalá, L. A. ; Sameshima, Koichi. Overcoming the limitations of correlation analyais for many simultaneously processed neural structures. Progress in Brain Research. v. 130, p. 33-47, 2001. Qualis: A4
4.	BARRERA, J. ; HASHIMOTO, R. F.. Sup-Compact and Inf-Compact Representations of W-Operators. Fundamenta Informaticae. v. 45, n. 4, p. 283-294, 2001.Qualis: A2
5.	BUCKERIDGE, M. S.; Vergara C. ; Carpita NC. Insight into multi-site mechanisms of glycosyl transfer in (1,4)-beta-D-glycans provided by the cereal mixed-linkage (1,3),(1,4)-beta-D-glucan synthase. Phytochemistry. v. 57, p. 1045-1053, 2001. Qualis: A2
6.	CAMARGO, A. ; SAMAIA, H. ; DIASNETO, Emmanuel ; SIMAO, D. ; MIGOTTO, I. ; BRIONES, M. ; COSTA, F. ; NAGAI, M ; Verjovski-Almeida, S. ; ZAGO, M. ; et.alli ; 87_other_authors ; BRENTANI, R. R. ; SIMPSON, A. J. ; DESOUZA, S.. The contribution of 700,000 ?ORF sequence tags? to the definition of the human transcriptome.. PNAS. Proceedings of the National Academy of Sciences of the United States of America, USA. v. 98, n. 21, p. 12103-12108, 2001. Qualis: A1 (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA)
7.	CAMARGO, A. A. ; NUNES, D. N. ; SAMAIA, H. B. ; LIU, L. ; COLLINS, V. P. ; SIMPSON, A. J. G. ; DIAS NETO, E.. Molecular characterization of DDX26, a human DEAD-box RNA helicase, located on chromosome 7p12. Brazilian Journal of Medical and Biological Research. v. 34, p. 1237-1245, 2001. Qualis: A4
8.	CAMARGO, A. A. ; SAMAIA, H. P. B. ; Dias-Neto, E. ; SIMAO, D. F. ; MIGOTTO, I. A. ; Briones, M. R. S. ; COSTA, F. F. ; APARECIDA NAGAI, M. ; Verjovski-Almeida, S. ; ZAGO, M. A. ; ANDRADE, L. E. C. ; Carrer, H. ; EL-DORRY, H. F. A. ; ESPREAFICO, E. M. ; HABR-GAMA, A. ; GIANNELLA-NETO, D. ; GOLDMAN, G. H. ; GRUBER, A. ; HACKEL, C. ; DA SILVA, A. M.. The contribution of 700,000 ORF sequence tags to the definition of the human transcriptome. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 98, p. 12103-12108, 2001. Qualis: A1
9.	Carvalho P.G.B. ; Borgetti, F. ; BUCKERIDGE, M. S. ; Morhy, L. ; Fereira Filho, E.X.. Temperature-dependent germination and endo-beta-mannanase activity in sesame seeds. Revista Brasileira de Fisiologia Vegetal, Viçosa. v. 13, n. 2, p. 139-148, 2001. Qualis: Não identificado (REVISTA BRASILEIRA DE FISIOLOGIA VEGETAL, VIÇOSA)
10.	CHABREGAS, S. M. ; LUCHE, D. D. ; FARIAS, L. P. ; RIBEIRO, A. F. ; SLUYS MAV. ; MENCK, C. F. M. ; SILVA-FILHO, M. C.. Dual targetting properties of the N-terminal signal sequence of Arabidopsis thaliana THI1 protein to mitochondria and chloroplast. Plant Molecular Biology. v. 46, p. 639-650, 2001. Qualis: A1
11.	Charchat, H. ; Nitrini, R. ; Caramelli, P. ; Sameshima, Koichi. Investigação de Marcadores Clínicos dos Estágios Iniciais da Doença de Alzheimer com Testes Neuropsicológicos Computadorizados. Psicologia. Reflexão e Crítica, Porto Alegre, RS, Brasil. v. 14, n. 2, p. 305-316, 2001. Qualis: Não identificado (REFLEXÃO E CRÍTICA, PORTO ALEGRE, RS, BRASIL)
12.	COSTA, R. ; MORGANTE, P. ; BERRA, C. ; NAKABASHI, M. ; BRUNEAU, D. ; BOUCHEZ, D. ; SWEDER, K. ; SLUYS MAV. ; MENCK, C. F. M.. The participation of AtXPB1, the XPB/RAD25 homologue gene from Arabidopsis thaliana, in DNA repair and plant development. Plant Journal. v. 28, p. 385-395, 2001. Qualis: A1
13.	DOBO, B. A. ; CLARK, A. G. ; VIBRANOVSKI, M. D.. Identification of five new genes on the Y chromosome of Drosophila melanogaster. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Estados Unidos. v. 98, n. 23, p. 13225-13230, 2001. Qualis: A1 (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA)
14.	Fanselow, E. E. ; SAMESHIMA, K. ; Baccalá, L. A. ; Nicolelis, M. A. L.. Thalamic bursting in rats during different awake behavioral states. PNAS. Proceedings of the National Academy of Sciences of the United States of America, Nova Iorque. v. 98, n. 26, p. 15330-15335, 2001. Qualis: A1 (PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA)
15.	FROHME, M. ; CAMARGO, A. ; CZINK, C. ; MATSUKUMA, A. ; SIMPSON, A. ; HOHEISEL, J. ; Verjovski-Almeida, S.. Directed gap closure in large scale sequencing projects. Genome Research, USA. v. 11, p. 901-903, 2001.Qualis: Não identificado (GENOME RESEARCH, USA)
16.	HASHIMOTO, R. F.; BARRERA, J.. From the Sup-Decomposition to Sequential Decompositions. Journal of Mathematical Imaging and Vision. v. 15, n. 3, p. 197-216, 2001. Qualis: A1
17.	Lima, D U ; BUCKERIDGE, M. S.. Interaction between cellulose and storage xyloglucans: the influence of degree of galactosylation. Carbohydrate Polymers, Inglaterra. v. 46, n. 2, p. 157-163, 2001. Qualis: Não identificado (CARBOHYDRATE POLYMERS, INGLATERRA)
18.	Lima, D U ; Santos HP ; TINÉ, M. A. S. ; MOLLE, F. D. ; BUCKERIDGE, M. S.. Patterns of expression of cell wall related genes in sugar cane. GENETICS AND MOLECULAR BIOLOGY, Campinas. v. 24, n. 1, p. 191-198, 2001. Qualis: Não identificado (GENETICS AND MOLECULAR BIOLOGY, CAMPINAS)
19.	Marques, M ; DA SILVA, A. M. ; GOMES, Suely Lopes. Genetic Organization of Plasmid pXF51 from the Plant Pathogen Xylella fastidiosa. Plasmid (San Diego. Print). v. 45, n. 3, p. 184-199, 2001. Qualis: Não identificado (PRINT))
20.	MORGANTE, P. G. ; PERES, L. E. P. ; VECHI, C. ; KRAUS, J. ; SLUYS MAV.. Shoot regeneration capacity from roots and transgenic hairy roots of different tomato cultivars and wild related species.. Plant Cell, Tissue and Organ Culture. v. 65, p. 37-44, 2001.Qualis: A1
21.	PANEGASSI, V. R. ; SERRA, G. E. ; BUCKERIDGE, M. S.. Potencial tecnológico do galactomanano de sementes de faveiro (Dimorphandra mollis) para uso na indústria de alimentos. Revista Brasileira de Ciência e Tecnologia de Alimentos. Ciência e Tecnologia de Alimentos, Campinas. v. 20, n. 3, p. 406-415, 2001. Qualis: Não identificado (CIÊNCIA E TECNOLOGIA DE ALIMENTOS, CAMPINAS)
22.	PEREIRA, A. C. ; CUOCO, M. A. R. ; MOTA, G. F. ; SILVA, F. F. ; FREITAS, H. F. G. ; BOCCHI, E. A. ; SOLER, J. M. P. ; MANSUR, A. ; KRIEGER, J. E.. Hemochromatosis gene Cys282Ty mutation is associated with Ischemic, but not Non-Ischemic Heart Failure. The American Journal of Cardiology. v. 88, n. 4, p. 388-391, 2001.Qualis: A2
23.	RODRIGUES, L. ; LUZ, J. G. C. ; SOLER, J. M. P.. Ocorrência da mineralização do complexo do ligamento estilo-hioideo em acientes com disfunção da ATM e em indivíduos assintomáticos. Brazilian Oral Research. 2001.Qualis: A2
24.	ROSSI, M. ; ARAÚJO, P. G. ; SLUYS MAV.. Survey of transposable elements in sugarcane expressed sequence tags (ESTs). Genetics and Molecular Biology, Estados Unidos. v. 24, p. 147-154, 2001.Qualis: Não identificado (GENETICS AND MOLECULAR BIOLOGY, ESTADOS UNIDOS)
25.	SALTINO, A. ; SALATINO, M. L. F. ; MELLOSILVA, R. ; SLUYS MAV. ; GIANNASI, D ; PRICE, R.A. Phylogenetic inference in Velloziaceae using chloroplast trnL-F sequences.. Systematic Botany. v. 26, p. 92-103, 2001.Qualis: A3
26.	SOUZA, Glaucia Mendes ; SIMÕES, Ana Carolina Quirino ; OLIVEIRA, Katia C. ; GARAY, H. M. ; FIORINI, Leonardo Costa ; GOMES, F. S. ; NISHIYAMA-JUNIOR, M. Y. ; DA SILVA, A. M.. The sugarcane signal transduction (SUCAST) catalogue: prospecting signal transduction in sugarcane. GENETICS AND MOLECULAR BIOLOGY. v. 24, n. 1-4, p. 25-34, 2001. Qualis: A4
27.	STANCATTO, J. ; MAZZAFERA, P. ; BUCKERIDGE, M. S.. Effect of a drought period on the mobilisation of non structural carbohydrates and water status in the epiphytic orchid Cattleya forbesii Lindl. X Laelia tenebrosa Rolfe.. Plant Physiology and Biochemistry (Paris), França. v. 39, n. 11, p. 1009-1016, 2001. Qualis: Não identificado (PLANT PHYSIOLOGY AND BIOCHEMISTRY , FRANÇA)
28.	WERNECK, R. ; SETUBAL, J. C.. Finding minimum congestion spanning trees. ACM Journal of Experimental Algorithmics. v. 6, p. 1-20, 2001.Qualis: Não identificado (ACM JOURNAL OF EXPERIMENTAL ALGORITHMICS)
29.	Wood, D. W. ; Setubal, J.C.. The Genome of the Natural Genetic Engineer Agrobacterium tumefaciens C58. Science, USA. v. 294, p. 2317-2323, 2001. Qualis: Não identificado (SCIENCE, USA)

2000

1.	ALVES, J. M. P.; Gusmão, C.X. ; Teixeira, M. M. G. ; Freitas, D. ; Foronda, A.S. ; Affonso, H.T.. Random amplified polymorphic DNA profiles as a tool for the characterization of Brazilian keratitis isolates of the genus Acanthamoeba. Brazilian Journal of Medical and Biological Research (Impresso), Ribeirão Preto/SP. v. 33, n. 1, p. 19-26, 2000. Qualis: A4 (BRAZILIAN JOURNAL OF MEDICAL AND BIOLOGICAL RESEARCH)
2.	Borges ELB ; Borges RCG ; BUCKERIDGE, M. S.. Alterações nas composições de carboidratos e de ácidos graxos em semenes de jacarandá-da-bahia osmocondicionadas.. Revista Brasileira de Fisiologia Vegetal. v. 12, p. 10-16, 2000.Qualis: Não identificado (REVISTA BRASILEIRA DE FISIOLOGIA VEGETAL)
3.	BUCKERIDGE, M. S.; Lima, D U ; Santos HP ; TINÉ, M. A. S.. Polissacarídeos de reserva de parede celular em sementes, estrutura, metabolismo, funções e aspectos ecológicos. Revista Brasileira de Fisiologia Vegetal, Brasília. v. 12, p. 137-162, 2000.Qualis: Não identificado (REVISTA BRASILEIRA DE FISIOLOGIA VEGETAL, BRASÍLIA)
4.	BUCKERIDGE, M. S.; TINÉ, M. A. S. ; Lima, D U ; Santos HP. Mobilisation of storage cell wall polysaccharides in seeds. Plant Physiology and Biochemistry (Paris). v. 38, p. 141-156, 2000. Qualis: A1
5.	CARVALHO-ALVES, P. C. ; HERING, V. R. ; OLIVEIRA, J. M. S. ; SALINAS, R. K. ; Verjovski-Almeida, S.. Requirement of the hinge domain for dimerization of Ca2+-ATPase large cytoplasmic portion expressed in bacteria. Biochimica et Biophysica Acta. Bioenergetics. v. 1467, n. 1, p. 73-84, 2000.Qualis: C
6.	D NETO, e ; CORREA, R.G ; Verjovski-Almeida, S. ; BRIONES, M. ; NAGAI, M. A. ; JUNIOR, W.S ; ZAGO, M. A. ; BORDIN, S. ; COSTA, F. F. ; GOLDMAN, G. H. ; CARVALHO, A. F. ; MATSUKUMA, A. ; BAIA, G. S. ; SIMPSON, D. H. ; BURSTEIN, A. ; OLIVEIRA, P. S. L. ; BUCHER, P. ; JONGENEEL, C. V. ; O'HARE, M. J. ; SOARES, F. ; et.al. Shotgun sequencing of the human transcriptome with open reading frame expressed sequence tags,. PNAS. Proceedings of the National Academy of Sciences of the United States of America. v. 97, p. 3491-3496, 2000.Qualis: A1
7.	DESOUZA, S. ; CAMARGO, A. ; BRIONES, M. ; COSTA, F. ; NAGAI, M ; Verjovski-Almeida, S. ; 69_other_authors ; BRENTANI, R. R. ; REIS, L. F. L. ; DIAS NETO, E. ; SIMPSON, A. J.. Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags. PNAS. Proceedings of the National Academy of Sciences of the United States of America. v. 97, p. 12690-12693, 2000.Qualis: A1
8.	FIETTO, J. ; DEMARCO, R. ; Verjovski-Almeida, S. ; D NETO, e ; SIMPSON, A.. Construction of ORESTES cDNA Libraries using Touch-down PCR. U S Letters Patent Application no 196716, Addendum to the Patent. 2000.Qualis: Não identificado (U S LETTERS PATENT APPLICATION NO 196716, ADDENDUM TO THE PATENT)
9.	Giuliatti, S.; Gallo Jr., L. ; Almeida-Filho, O.C. ; SCHMIDT, A. ; Marin-Neto, J.A. ; Pelá, C.A. ; Maciel, B.C.. A pulsatile flow model for in vitro quantitative evaluation of prosthetic valve regurgitation. Brazilian Journal of Medical and Biological Research. v. 33, p. 341-346, 2000. Qualis: A4
10.	HASHIMOTO, R. F.; BARRERA, J. ; FERREIRA, C. E.. A Combinatorial Optimization Technique for the Sequential Decomposition of Erosions and Dilations. Journal of Mathematical Imaging and Vision. v. 13, p. 17-33, 2000. Qualis: A1
11.	KOBORI, R. F. ; VECCHIA, P. T. D. ; KUROZAWA, C. ; SOLER, J. M. P.. Avaliação da resistência de linhagens de Capsicum annum quando inoculadas com três concentrações de inóculo de Phytophthora capsici. Summa Phytopathologica. v. 26, n. 1, p. 77-81, 2000.Qualis: B3
12.	MAYWORM, M. A. S. ; BUCKERIDGE, M. S. ; Salatino A. Monomer composition of polysaccharides of seed cell walls and the taxonomy of the Vochysiaceae. Phytochemistry. v. 55, p. 581-587, 2000. Qualis: A2
13.	SAMAIA, H. B.; VALLADA, H. P.. Aspectos genéticos da doença de Alzheimer. Revista de Psiquiatria Clínica. v. 27, p. 104-110, 2000.Qualis: Não identificado (REVISTA DE PSIQUIATRIA CLÍNICA)
14.	SAMAIA, H. B.; VALLADA, H. P.. Esquizofrenia: aspectos genéticos e estudos de fatores de risco.. Revista de Psiquiatria Clínica. v. 22, n. I, p. 2-4, 2000. Qualis: Não identificado (REVISTA DE PSIQUIATRIA CLÍNICA)
15.	Simpson, A. J. G. ; Reinach, F.C. ; Arruda, P. ; Abreu, F. A. ; Acencio, M. ; Alvarenga, R. ; Alves, L. M. C. ; Araya, J. E. ; Baia, G. S. ; Baptista, C. S. ; Barros, M. H. ; Bonaccorsi, E. D. ; Bordin, S. ; Bové, J. M. ; Briones, M. R. S. ; Bueno, M. R. P. ; CAMARGO, A. A. ; Camargo, L. E. A. ; Carraro, D. M. ; DA SILVA, A. M.. The genome sequence of the plant pathogen Xylella fastidiosa.. Nature (London), Londres. v. 406, p. 151-157, 2000. Qualis: Não identificado (NATURE , LONDRES)
16.	SOLER, J. M. P.; SINGER, J. M.. Optimal Covariance Adjustment in Growth Curve Models. Computational Statistics & Data Analysis. v. 33, n. 1, p. 101-110, 2000.Qualis: A2
17.	TINÉ, M. A. S. ; CORTELAZZO, A. L. ; BUCKERIDGE, M. S.. Xyloglucan mobilisation in cotyledons of developing plantlets of Hymenaea courbaril L. (Leguminosae-Caesalpinoideae). Plant Science (Limerick). v. 154, p. 117-126, 2000. Qualis: A1
18.	TINÉ, M. A. S. ; CORTELAZZO, A. L. ; BUCKERIDGE, M. S.. Occurrence of xyloglucan containing protuberances in the storage cell walls of cotyledons of Hymenaea courbaril L. Brazilian Journal of Botany. v. 23, p. 413-417, 2000. Qualis: B1

(*) Relatório criado com produções desde 2000 até 2025
Data de processamento: 18/02/2025 12:52:38