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Programa de Pós Graduação em Bioinformática

2025

1.	ALCÂNTARA, LARISSA DOS SANTOS ; CAMPOS, MARLIANE BATISTA ; LIMA, ANA CAROLINA STOCCO ; PONTILLO, ALESSANDRA ; SOUZA, KAMILLA BATISTA DA SILVA ; FERREIRA, AUREA FAVERO ; CAMARGO, CRISTINA PIRES ; OBA-SHINJO, SUELI MIEKO ; LAURENTI, MÁRCIA DALASTRA ; CORBETT, CARLOS EDUARDO PEREIRA ; DA MATTA, VANIA L. R. ; NAKAYA, HELDER ; SILVEIRA, FERNANDO T. ; GOMES, CLAUDIA MARIA DE CASTRO. Transcriptomic and Immunopathological Profiles of Inflammasomes in Different Clinical Forms of American Cutaneous Leishmaniasis. Microorganisms. v. 13, p. 980, 2025. Qualis: B1
2.	ALMEIDA, ISABELA ; BRUNO, HENRY A B ; GUIMARÃES DUPIM, EDUARDO ; SANTANA PINHEIRO, MARA MARIA L ; CARVALHO, ANTONIO BERNARDO ; VIBRANOVSKI, MARIA D. OligoY pipeline for full Y chromosome painting. Briefings in Bioinformatics. v. 26, p. bbaf507, 2025. Qualis: A1
3.	ALVES, WONDER A.L. ; CAMPOS, WANDER S. ; Gobber, Charles F. ; SILVA, DENNIS J. ; HASHIMOTO, RONALDO F.. Multichannel image classification based on adaptive attribute profiles. PATTERN RECOGNITION LETTERS. v. 187, p. 107-114, 2025. Qualis: A2
4.	ARAUJO, ALEXANDRE JUNIO BORGES ; De Souza, Amanda Pereira ; PAGLIUSO, DÉBORA ; DE MEDEIROS OLIVEIRA, MAURO ; NAVARRO, BRUNO VIANA ; GRANDIS, Adriana ; BUCKERIDGE, MARCOS SILVEIRA. Cell wall modulation by drought and elevated CO2 in sugarcane leaves. Frontiers in Plant Science. v. 16, p. 01, 2025. Qualis: A1
5.	ARAUJO, CAMILA DO NASCIMENTO ; SILVA, FELIPE ; ZIMPEL, CRISTINA KRAEMER ; SILVA-PEREIRA, TAIANA TAINÁ ; SOLER-CAMARGO, NAILA CRISTINA ; DE MELO, FILIPE MENEGATTI ; DE ARAÚJO, MARCELO VALDEMIR ; GUIMARÃES, ANA MARCIA DE SÁ. Comparative pathoadaptation of Mycobacterium canettii and Mycobacterium tuberculosis: Insights from assays on phagosome acidification, cytosolic access, and transcriptomics. MICROBES AND INFECTION. v. 27, p. 105503, 2025. Qualis: A2
6.	ASHRAF, F. B. ; PACO, K. ; ZHANG, Z. ; OJEDA, C. J. D. ; MENDIVIL, M. P. ; LAY, J. A. ; YANG, T. Y. ; Barroso da Silva, Fernando L. ; SAZINSKY, M. H. ; RAY, A. ; LONARDI, S.. A Large Language Model Guides the Affinity Maturation of Antibodies Generated by Combinatorial Optimization Algorithms. 2025. Artigo submetido
7.	AVELINO, CAMILA C. ; MENDONCA, CAROLINA A. ; GOLDSTEIN, GABRIEL ; BRUNO, HENRY BONILLA ; CARVALHO, ANTONIO BERNARDO ; VIBRANOVSKI, MARIA D.. Meiotic Sex Chromosome Inactivation: Conservation across the Drosophila genus. PLoS Genetics. v. 21, p. e1011511, 2025. Qualis: A1
8.	BACOVSKY, DINA ; SONNLEITNER, ANDREA ; LEAL SILVA, JEAN FELIPE ; SOUZA, GLAUCIA MENDES. Tracking cellulosic ethanol: commercialization and regional insights. Biofuels Bioproducts & Biorefining-Biofpr. v. x, p. 10.1002/bbb.700-2, 2025. Qualis: Não identificado (BIOFUELS BIOPRODUCTS & BIOREFINING-BIOFPR)
9.	BARCELOS, PEDRO MARÇAL ; FILGUEIRAS, IGOR SALERNO ; NÓBILE, ADRIEL LEAL ; USUDA, JÚLIA NAKANISHI ; ADRI, ANNY SILVA ; DE ALBURQUERQUE, DÉBORA GOMES ; CÔRREA, YOHAN LUCAS GONÇALVES ; DO VALE, FERNANDO YURI NERY ; BAHIA, IAN ANTUNES FERREIRA ; NAVA, ROSEANE GALDIOLI ; BORONI, MARIANA ; MARQUES, ALEXANDRE H. C. ; DALMOLIN, RODRIGO ; SCHIMKE, LENA F. ; CABRAL-MIRANDA, GUSTAVO ; Nakaya, Helder I. ; DIAS, HAROLDO DUTRA ; FONSECA, DENNYSON LEANDRO M. ; CABRAL-MARQUES, OTAVIO. Gene regulatory networks analysis for the discovery of prognostic genes in gliomas. Scientific Reports. v. 15, p. 1, 2025. Qualis: A2
10.	barroso da silva, f l. Constant-pH Methods in Biomolecular Simulations: Integrating Physics, Machine Learning, and Applications. Sao Paulo: SAIFR. 2025. Texto de divulgação científica
11.	Barroso da Silva, Fernando L. From Validation To Prediction: A Biophysical Tool For Mapping SARS-CoV-2 Variant Evolution. Em: 2025 EMBO/FEBS Lecture Course Physical Virology: across length scales, 2025, Sant Feliu de Guixols. Abstract Book - Physical Virology: Across length scales, v. 1, 2025.
12.	Barroso da Silva, Fernando L. Palestra convidada: Bioinformática Estrutural na saúde: de interações biomoleculares a virologia computacional e medicina molecular. 2025. Apresentação de Trabalho/Conferência ou palestra
13.	Barroso da Silva, Fernando L. Palestra: Constant-pH Methods in Biomolecular Simulations: Integrating Physics, Machine Learning, and Applications. 2025. Apresentação de Trabalho/Conferência ou palestra
14.	Barroso da Silva, Fernando L. Palestra convidada: EXPLORING SARS-COV-2 AT THE MOLECULAR LEVEL: COMPUTATIONAL ADVANCES FOR UNDERSTANDING PATHOLOGY, VIRAL EVOLUTION, AND DESIGNING THERAPEUTIC BINDERS. 2025. Apresentação de Trabalho/Congresso
15.	Barroso da Silva, Fernando L. Palestra: From Validation To Prediction: A Biophysical Tool For Mapping SARS-CoV-2 Variant Evolution. 2025. Apresentação de Trabalho/Conferência ou palestra
16.	Barroso da Silva, Fernando L. Palestra convidada - Combining physical-based simulation methods and machine learning approaches for antibody engineering. 2025. Apresentação de Trabalho/Simpósio
17.	Barroso da Silva, Fernando L. Palestra convidada: Fast Constant-pH Simulation Methods for Biomolecular Systems: From Biomaterials to Viral Complexes. 2025. Apresentação de Trabalho/Conferência ou palestra
18.	Barroso da Silva, Fernando L. Palestra convidada: Artificial Intelligence and Physics-based Simulation in Antibody Engineering as a Bridge between Research and Education. 2025. Apresentação de Trabalho/Congresso
19.	Barroso da Silva, Fernando L. Palestra convidada: Bioinformática Estrutural: Dos Aspectos Físicos ao AlphaFold e à Identificação de Alvos Vacinais. 2025. Apresentação de Trabalho/Conferência ou palestra
20.	Barroso da Silva, Fernando L.; PACO, K. ; RAY, A. ; LAAKSONEN, AATTO. Biophysics of SARS-CoV-2 Spike Protein's Interaction with ACE2 and Neutralizing Antibodies: From Computation to Functional Insights. BIOPHYSICAL REVIEWS. v. 17, p. 309-333, 2025. Qualis: A3
21.	BATALHA, CAIO M.P.F. ; Fujita, André ; DE SOUZA-PINTO, NADJA C.. A combination of differential expression and network connectivity analyses identifies a common set of RNA splicing and processing genes altered with age across human tissues. Aging-US. v. 17, p. 1, 2025. Qualis: Não identificado (AGING-US)
22.	BATISTA, LUÍS FÁBIO S. ; SANDOVAL PACHECO, CARMEN M. ; FLORES, GABRIELA V. ARAUJO ; FERREIRA, FREDERICO M. ; GONÇALVES, ANDRÉ N. A. ; SOSA-OCHOA, WILFREDO H. ; DA MATTA, VÂNIA L. R. ; GOMES, CLAUDIA M. C. ; ZÚNIGA, CONCEPCIÓN ; CORBETT, CARLOS E. P. ; JEFFARES, DANIEL C. ; Nakaya, Helder I. ; SILVEIRA, FERNANDO T. ; LAURENTI, MÁRCIA D.. Molecular Insights into Cell-Mediated Immunity in Atypical Non-Ulcerated Cutaneous Leishmaniasis. Microorganisms. v. 13, p. 413, 2025. Qualis: B1
23.	BORGES, I.C. ; LINO, F.M. ; LUNA-MUSCHI, A. ; LITVOC, M.N. ; LOPES, M.I.B.F. ; HIGASHINO, H.R. ; DA COSTA, Á.F. ; PEREIRA, R.H.M. ; NAKAYA, H.I. ; DE ARAÚJO, J.D.A. ; ORLANDI, G.M. ; RÚJULA, M.J.P. ; CARVALHANAS, T.R.M.P. ; NIELSEN, L. ; MINTO, C.M. ; SABINO, E.C. ; COSTA, S.F. ; RANZANI, O.. TB as a risk factor for severe COVID-19 mortality. INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE. v. 29, p. 186-188, 2025. Qualis: A3 (THE INTERNATIONAL JOURNAL OF TUBERCULOSIS AND LUNG DISEASE)
24.	BORREGO, B.B. ; OLIVEIRA, F.L. ; MELO, L.B.U. ; GRACIOSO, L.H. ; HENTSCHKE, G.S. ; VASCONCELOS, V.M. ; Grandis, A. ; BUCKERIDGE, M.S. ; CAETANO, N.S. ; PERPETUO, E.A.. Unveiling metabolic diversity through phylogenetic analysis and carbohydrate composition of microalgae isolated from mangroves in Brazil. Algal Research-Biomass Biofuels and Bioproducts. v. 91, p. 104313, 2025. Qualis: Não identificado (ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS)
25.	BRASSART, P. ; Barroso da Silva, Fernando L. ; TRIBET, C.. Painel: Coacervation and Binding Affinity of Poly(glutamate)-Monoclonal Antibody Complexes: Insights from Experiments and Theoretical Modeling. 2025. Apresentação de Trabalho/Simpósio
26.	Buckerdge, M.S. Cidades como elementos centrais nas transições climáticas. Revista USP, São Paulo, p. 105-126, 15 dez. 2025.
27.	Buckerdge, M.S.; PHILIPPI JUNIOR, A.. Sustentabilidade e Mudanças Climáticas. Revista USP, São Paulo, p. 127-144, 15 dez. 2025.
28.	CAMILO, CAROLINE ; VIEIRA, LUANA MARTOS ; GOUVEIA, GISELE RODRIGUES ; TORREZAN, ARLETI CARAMORI ; PEIXOTO, ANDREA ; EUCLYDES, VERONICA ; FRANCISCO, ROSSANA PULCINELI VIEIRA ; BRENTANI, ALEXANDRA ; FELIPE-SILVA, ALOISIO ; BRENTANI, HELENA. Innovative approach for the qualitative-quantitative assessment of neurodevelopment biomarkers research in placenta tissue using immunohistochemistry digital image analysis. Biology Methods & Protocols. v. 10, p. 1-12, 2025. Qualis: Não identificado (BIOLOGY METHODS & PROTOCOLS)
29.	CANO, LYANG HIGA ; AHMED, WAHEED ; LIMA, WÂNIA REZENDE ; MARTINS, DAVID CORRÊA ; PARREIRA, KLEBER SIMÔNIO ; GARCIA, CÉLIA R.S. ; HASHIMOTO, RONALDO FUMIO. Gene network analysis of Plasmodium falciparum ubiquitin-proteasomal system pathways reveals co-expression of the E1, E2 and E3 enzymes during intraerythrocytic cycle. HELIYON. v. 11, p. e44019, 2025. Qualis: A4
30.	Castro Guzman, Grover Enrique ; STADLER, PETER FLORIAN ; Fujita, Andre. A message-passing approach to obtain the trace of matrix functions with applications to network analysis. NUMERICAL ALGORITHMS. v. 98, p. 1, 2025. Qualis: A4
31.	CHAVES, BEATRIZ ; SANTOS E SILVA, JUAN CARLO ; NAKAYA, HELDER ; SOCQUET-JUGLARD, NICOLAS ; BUCCIARELLI, FLORENCE ; PRUNIER, GUILHÈN ; ALMEIDA, MATHEUS V. ; LACOUTURE, CLAIRE ; KARI, SANIYA ; ASTIER, ANNE L. ; MEDEIROS, MARCO A. ; SILVA, JOÃO H. M. ; LIBLAU, ROLAND ; COTTA-DE-ALMEIDA, VINICIUS ; DUPRÉ, LOÏC. In vitro morphological profiling of T cells predicts clinical response to natalizumab therapy in patients with multiple sclerosis. Nature Communications. v. 16, p. 1, 2025. Qualis: A1
32.	CORRADI, CAMILA ; MORENO, NATÁLIA CESTARI ; QUINTERORUIZ, NATHALIA ; SILVA LEANDRO, GIOVANA DA ; TEATIN LATANCIA, MARCELA ; DE SOUZA, TIAGO ANTONIO ; MUNFORD, VERIDIANA ; Menck, Carlos Frederico Martins. Uncovering the Role of DNA Repair Impairment in UVA-Induced Mutagenesis in Human Xeroderma Pigmentosum Variant Cells. MOLECULAR CARCINOGENESIS. v. 64, p. 1823-1837, 2025. Qualis: A3
33.	CORTESE, MARIO ; HAGAN, THOMAS ; Rouphael, Nadine ; WU, SHENG-YANG ; XIE, XIA ; KAZMIN, DMITRI ; WIMMERS, FLORIAN ; GUPTA, SHAKTI ; VAN DER MOST, ROBBERT ; COCCIA, MARGHERITA ; ARANUCHALAM, PRABHU S. ; Nakaya, Helder I. ; WANG, YATING ; COYLE, ELIZABETH ; HORIUCHI, SHU ; WU, HANCHIH ; BOWER, MARY ; MEHTA, ANEESH ; GUNTHEL, CLIFFORD ; BOSINGER, STEVE E. ; et.al. System vaccinology analysis of predictors and mechanisms of antibody response durability to multiple vaccines in humans. NATURE IMMUNOLOGY. v. 26, p. 116-130, 2025. Qualis: A1
34.	COSTA, CLAUDIA ISMANIA SAMOGY ; MADANELO, LUCIANA ; WANG, JAQUELINE YU TING ; DA SILVA CAMPOS, GABRIELE ; DE SANCTIS GIRARDI, ANA CRISTINA ; SCLIAR, MARÍLIA ; MONFARDINI, FREDERICO ; DE CÁSSIA MINGRONI PAVANELLO, RITA ; CÓRIA, VIVIAN ROMANHOLI ; Vibranovski, Maria Dulcetti ; KREPISCHI, ANA CRISTINA ; LOURENÇO, NAILA CRISTINA VILAÇA ; ZATZ, MAYANA ; YAMAMOTO, GUILHERME LOPES ; ZACHI, ELAINE CRISTINA ; PASSOS-BUENO, MARIA RITA. Understanding rare variant contributions to autism: lessons from dystrophin-deficient model. npj Genomic Medicine. v. 10, p. 18, 2025. Qualis: A3
35.	CRUZ, LILIAN ; FERREIRA, FREDERICO MORAES ; LOPES'RAMOS, CAMILA MIRANDA ; WEI, ZHIYUN ; HENDRIKS, WILLIAM T. ; JINNAH, H. A. ; Nakaya, Helder I. ; BRAGG, D. CRISTOPHER ; KRICHEVSKY, ANNA M. ; BREAKEFIELD, XANDRA OWENS ; HOHMUTH LOPES, MARILENE. Intracellular and Extracellular Vesicle miRNA Signatures in Human iPSC -Derived Neural Stem Cells and Floor Plate Progenitors. FASEB JOURNAL. v. 39, p. 1, 2025. Qualis: Não identificado (FASEB JOURNAL)
36.	DA SILVA, FELIPE ALEXSANDER RODRIGUES ; DE CARVALHO, LUCAS AMOROSO LOPES ; GRANDIS, Adriana ; BUCKERIDGE, MARCOS SILVEIRA ; BALBUENA, TIAGO SANTANA. Changes in the sap proteome of Eucalyptus grandis and Eucalyptus urophylla plants grown at elevated CO- atmosphere. Brazilian Journal of Botany. v. 48, p. 1-9, 2025. Qualis: B1
37.	DANTAS, ANNA CAROLINA SAÚDE ; OLIVEIRA, HELLEN BRAGA MARTINS ; PEREIRA, TAIANA TAINÁ SILVA ; LIMA, AMANDA FERREIRA ; SANTOS, LEONARDO SILVA ; MATOS, JANAINA MARINHO FERNANDES ; ARANHA, THAÍS ; MAGNO, LAIO ; SOARES, FABIANE ; DOURADO, INÊS ; TORRES, THIAGO S. ; VELOSO, VALDILÉA GONÇALVES ; DA COSTA FERREIRA JUNIOR, ORLANDO ; DE MORAES, LAISE ; SANTOS, LUCIANE AMORIM ; SOUTO DE MEDEIROS, DANIELLE ; BARRETO, FERNANDA KHOURI ; FREITAS, LEANDRO MARTINS DE ; DE SÁ GUIMARÃES, ANA MARCIA ; CAMPOS, GUILHERME BARRETO ; et.al. Analysis of the prevalence, spread, and mutation patterns of SARS-CoV-2 variants: data from COVID-19 testing expansion strategy study in salvador, Northeast Brazil. Scientific Reports. v. 15, p. 2, 2025. Qualis: A2
38.	DE ALMEIDA BARBOSA ASSIS, RENATA ; FERREIRA, RAFAEL MARINI ; PAULINO DE OLIVEIRA, AMANDA CAROLINA ; SOUZA CARVALHO, FLÁVIA MARIA ; FERRO, JESUS APARECIDO ; FRANCISCO DE SOUZA, ROBSON ; ORELLANO, ELENA GRACIELA ; ALMEIDA, NALVO FRANCO ; MACHADO GARCIA, CAMILA CARRIÃO ; DANDEKAR, ABHAYA M. ; CHAKRABORTY, SANDEEP ; VARANI, ALESSANDRO M. ; MOREIRA, LEANDRO MARCIO. Exploring multitasking proteins in Xanthomonas secretomes: Insights into mechanisms of plant-pathogen interactions. HELIYON. v. e42979, p. e42979, 2025. Qualis: A4
39.	DE CARVALHO FRAGA, CARLOS ALBERTO ; TIBURSKE, LEANDRO ; LUCENA DA SILVA, GABRIEL VICTOR ; SIMIZO, ADRIANA ; CAFUNDÓ DE MORAIS, MAURO CESAR ; DA SILVA FERNANDES DUARTE, ANA KELLY ; MOGOLLÓN GARCÍA, HENRY DAVID ; CRESPO HIRATA, THIAGO DOMINGUEZ ; Nakaya, Helder I.. Revealing shared molecular drivers of brain metastases from distinct primary tumors. BRAIN RESEARCH. v. 1851, p. 149456, 2025. Qualis: A2
40.	DE OLIVEIRA, LAUANA P. ; DE OLIVEIRA, LEANDRO F. ; NAVARRO, BRUNO V. ; MACEDO, AMANDA F. ; MARTINS, MARINA C. M. ; Buckeridge, Marcos S. ; FLOH, ENY I. S.. Distinct metabolic profiles of key metabolites in sugarcane leaves and culms highlight their potential roles in growth and development. Theoretical and Experimental Plant Physiology. v. 37, p. 1-10, 2025. Qualis: A4
41.	E. C. GUZMAN, GOVER ; GONZÁLEZ LAFFITTE, MARCOS E. ; Fujita, André ; F. STADLER, PETER. Primitive, edge-short, isometric, and pantochordal cycles. The Art of Discrete and Applied Mathematics. v. 8, p. 1, 2025. Qualis: Não identificado (THE ART OF DISCRETE AND APPLIED MATHEMATICS)
42.	FALCONI-SOUTO, ALLAN ; CABRAL-CARVALHO, RODRIGO M. ; Fujita, André ; SATO, João Ricardo. Inferences on the Watts-Strogatz Model: A Study on Brain Functional Connectivity. Neuroinformatics. v. 23, p. 57, 2025. Qualis: A1
43.	FATORI, DANIEL ; SHEPHARD, ELIZABETH ; BENETTE, DANILO ; NASPOLINI, NATHALIA FERRAZZO ; GUZMAN, GROVER CASTRO ; WANG, JAQUELINE YU TING ; TÓTOLO, PEDRO ; MAFRA, ANTHONIETA LOOMAN ; ISAIAS, CAIO ; DOS SANTOS, DAVI PEREIRA ; RUSSO, FABIELE BALDINO ; KOBAYASHI, GERSON ; ARGEU, ADRIANA ; TEIXEIRA, MONIKE ; MATTIELLO-SVERZUT, ANA CLAUDIA ; FERNANDES, MARIA TERESA BECHERE ; PETIAN-ALONSO, DANILA CRISTINA ; BRENTANI, HELENA ; SCLIAR, MARILIA ; SCHÜROFF, PAULO ALFONSO ; et.al. Identifying biomarkers and trajectories of executive functions and language development in the first 3 years of life: Design, methods, and findings of the Germina cohort study. DEVELOPMENT AND PSYCHOPATHOLOGY. v. -, p. 1-11, 2025. Qualis: A1
44.	FELIPE, I. A. ; KOIDE, T.. Systemic investigation of gene regulation by excludons in prokaryotes. 2025. Apresentação de Trabalho/Outra
45.	FERNANDES, CAMILA FELIX DE LIMA ; LOPES, MARILENE HOHMUTH ; SOUZA, MARIA CLARA DA SILVA ; SOARES, SAMUEL RIBEIRO ; ARÉVALO-ROMERO, JENNY ANDREA ; LACKIE, RACHEL E. ; COELHO, BÁRBARA PARANHOS ; DE ARAÚJO, JOÃO PEDRO ALVES ; BOCCACINO, JACQUELINE MARCIA ; IGLESIA, REBECA PIATNICZKA ; MELO-ESCOBAR, MARIA ISABEL ; PRADO, MARIANA BRANDÃO ; FALCHETTI, MARCELO ; FERREIRA, FREDERICO MORAES ; NAKAYA, HELDER ; DOS SANTOS, TIAGO GÓSS ; DA ROCHA, EDROALDO LUMMERTZ ; BERALDO, FLÁVIO H. ; PRADO, VANIA F. ; PRADO, MARCO A. M. ; et.al. Stress-inducible phosphoprotein 1 (STIP1) is a critical stemness regulator in mouse embryonic stem cells and early mammalian development. Communications Biology. v. 8, p. 1, 2025. Qualis: C
46.	FISCHER-CARVALHO, AGATHA ; Taveira-Barbosa, TC ; Verjovski-Almeida, S. ; Haeberlein, S. ; AMARAL, M. S.. Antischistosomal Potential of Animal-Derived Natural Products and Compounds. Microorganisms. v. 13, p. 397, 2025. Qualis: B1
47.	FONSECA, DENNYSON LEANDRO M. ; JÄPEL, MAJ ; GYAMFI, MICHAEL ADU ; FILGUEIRAS, IGOR SALERNO ; BAIOCHI, GABRIELA CRISPIM ; OSTRINSKI, YURI ; HALPERT, GILAD ; LAVI, YAEL BUBLIL ; VOJDANI, ELROY ; SILVA-SOUSA, THAYNA ; USUDA, JÚLIA NAKANISHI ; E SILVA, JUAN CARLO SANTOS ; FREIRE, PAULA P. ; NÓBILE, ADRIEL LEAL ; ADRI, ANNY SILVA ; BARCELOS, PEDRO MARÇAL ; CORRÊA, YOHAN LUCAS GONÇALVES ; DO VALE, FERNANDO YURI NERY ; LOPES, LETÍCIA OLIVEIRA ; NAKAYA, H. I. ; et.al. Dysregulated autoantibodies targeting AGTR1 are associated with the accumulation of COVID-19 symptoms. Npj Systems Biology And Applications. v. 11, p. 1, 2025. Qualis: Não identificado (NPJ SYSTEMS BIOLOGY AND APPLICATIONS)
48.	GOUVEIA, GISELE RODRIGUES ; CAMILO, CAROLINE ; BRENTANI, HELENA. Plasticidade epigenética e desenvolvimento infantil. Em: Naercio Menezes Filho. (Org.). Ciência da primeira infância. 1ed. : Editora Blucher. 2025.p. 36-49.
49.	GRANDGUILLAUME, I. ; Barroso da Silva, Fernando L. ; ETCHEBEST, CATHERINE. ANABAG: Annotated Antibody Antigen dataset with unique features for Antibody Engineering Applications. Journal of Chemical Information and Modeling. v. x, p. x, 2025. Qualis: A1
50.	GUPTA, SHANTANU ; SILVEIRA, DANER A. ; MOMBACH, JOSÉ CARLOS M. ; HASHIMOTO, RONALDO F.. DNA Damage-Induced Ferroptosis: A Boolean Model Regulating p53 and Non-Coding RNAs in Drug Resistance. PROTEOMES. v. 13, p. 6, 2025. Qualis: B3
51.	GUPTA, SHANTANU ; SILVEIRA, DANER ACUNHA ; MOMBACH, JOSÉ CARLOS ; HASHIMOTO, RONALDO F.. Targeting NSCLC drug resistance: Systems biology insights into the MALAT1/miR-145-5p axis and Wip1 in regulating ferroptosis and apoptosis. Journal of The Royal Society Interface. v. 22, p. 20240852, 2025. Qualis: A1
52.	GUZMAN, GROVER E C ; Fujita, André. Statistical methods for hypergraphs: a parameter estimator, a model selection, and a comparative test. Journal Of Complex Networks. v. 13, p. 1, 2025. Qualis: A1
53.	GUZMAN, GROVER E C ; TAKAHASHI, DANIEL YASUMASA ; Fujita, André. Vertex-wise graph?s spectral density decomposition and its applications. Journal Of Complex Networks. v. 13, p. 1, 2025. Qualis: A1
54.	HAO, STEPHANIE ; TOMIC, IVAN ; LINDSEY, BENJAMIN B. ; JAGNE, YA JANKEY ; HOSCHLER, KATJA ; MEIJER, ADAM ; CARREÑO QUIROZ, JUAN MANUEL ; MEADE, PHILIP ; SANO, KAORI ; PENO, CHIKONDI ; COSTA-MARTINS, ANDRÉ G. ; BOGAERT, DEBBY ; KAMPMANN, BEATE ; NAKAYA, HELDER ; KRAMMER, FLORIAN ; DE SILVA, THUSHAN I. ; TOMIC, ADRIANA. Integrative mapping of pre-existing influenza immune landscapes predicts vaccine response. The journal of clinical investigation (Online). v. 1, p. 1, 2025. Qualis: A1
55.	HUMBLIN, ETIENNE ; KORPAS, ISABEL ; PROKHNEVSKA, NATALIYA ; VAIDYA, ABISHEK ; FILIPESCU, DAN ; LU, JIAHUA ; VAN DER HEIDE, VERENA ; DE CARVALHO FRAGA, CARLOS ALBERTO ; BOBROWSKI, TESIA ; MARKS, ADAM ; PARK, MATTHEW D. ; Nakaya, Helder I. ; BERNSTEIN, EMILY ; BROWN, BRIAN D. ; LUJAMBIO, AMAIA ; DOMINGUEZ-SOLA, DAVID ; ROSENBERG, BRAD R. ; KAMPHORST, ALICE O.. The costimulatory molecule ICOS limits memory-like properties and function of exhausted PD-1+CD8+ T cells. IMMUNITY. v. 1, p. 1, 2025. Qualis: A1
56.	KAJITANI, GUSTAVO SATORU ; TOMAZ, MARINA ANDRADE ; LEANDRO, GIOVANA DA SILVA ; Quayle, Carolina ; ROCHA, LORRANA CACHUITE MENDES ; DE SOUZA, TIAGO ANTONIO ; MOREIRA, LEANDRO MÁRCIO ; ROSSE, IZINARA ; Menck, Carlos Frederico Martins ; GARCIA, CAMILA CARRIÃO MACHADO. Altered pathways in Cockayne syndrome: Involvement of MAPK, PI3K-Akt, extracellular matrix, inflammation, and neuronal signaling. DNA REPAIR. v. 152, p. 103861, 2025. Qualis: A1
57.	KITANISHI, NORTON ; BORDINI, DANIELA ; RIBEIRO, MARCOS V V ; PAULA, CRISTIANE SILVESTRE ; BRENTANI, HELENA ; PORTELESE, JOANA ; SURKAN, PAMELA J ; MARTINS, SILVIA S ; JESUS MARI, JAIR DE ; MARTINS OKUDA, PAOLA MATIKO ; CAETANO, SHEILA C. Validating the Child Behavior Checklist 1.5-5 as a screening tool for autism spectrum disorder. AUTISM. v. 29, p. 1072-1079, 2025. Qualis: A1
58.	KOIDE, T.; PICINATO, BEATRIZ A. ; Vencio, R. Z. N. ; ZARAMELA, LIVIA S. ; Santos, VHF. Archaea express circular RNAs associated with ancestral CRISPR-Cas systems. 2025. Apresentação de Trabalho/Seminário
59.	LEAL SILVA, JEAN FELIPE ; Nogueira, Luiz Augusto Horta ; CANTARELLA, HEITOR ; ROSSETTO, RAFFAELLA ; MACIEL FILHO, RUBENS ; SOUZA, GLAUCIA MENDES. Meta-data analysis of biofuels in emerging markets of Africa and Asia: Greenhouse gas savings and economic feasibility. RENEWABLE & SUSTAINABLE ENERGY REVIEWS. v. 213, p. 115465, 2025. Qualis: A1
60.	LEAL, ADRIANO GALINDO ; AOYAGI, THIAGO YUJI ; COSTA-MARTINS, ANDRÉ GUILHERME ; DE SOUZA, DIEGO TRINDADE ; DA SILVA, CRISTINA MARIA FERREIRA ; UEDA, EDUARDO TAKEO ; PARADA, MARCELO GONZAGA DE OLIVEIRA ; FEITOSA, ALLAN EDUARDO ; Fujita, André. Pantheon-DNA: Versatile encoding-decoding system with integrated adaptive NGS preprocessing algorithms for DNA data storage. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL. v. 27, p. 3941-3951, 2025. Qualis: Não identificado (COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL)
61.	LEE, SUN MIN ; LEE, JUNGHWA ; KIM, DONG-IN ; AVILA, JONATHAN P. ; NAKAYA, HELDER ; KWAK, KIHYUCK ; KIM, EUI HO. Emulsion adjuvant-induced uric acid release modulates optimal immunogenicity by targeting dendritic cells and B cells. npj Vaccines. v. 10, p. 72, 2025. Qualis: Não identificado (NPJ VACCINES)
62.	LIMA, THAIS S.A. ; CORSI-ZUELLI, FABIANA ; SOUZA, ADRIANA J. ; COLODETE, DEBORA A.E. ; RODRIGUES DA SILVA, NAIELLY ; VERZA, FLÁVIA A. ; DEAKIN, BILL ; DEL-BEL, ELAINE A. ; LOUZADA-JUNIOR, PAULO ; DEL-BEN, CRISTINA MARTA ; GUIMARÃES, FRANCISCO S. ; Nakaya, Helder I. ; GOMES, FELIPE V.. Low-dose methotrexate as a potential treatment for schizophrenia via astrocytic and neuroimmune modulation. SCHIZOPHRENIA RESEARCH. v. 284, p. 67-76, 2025. Qualis: A1
63.	MAEHR, TANJA ; LOPEZ, JAVIER ; DRAKE, GABBY ; FERREIRA, FREDERICO M. ; FRASER, RICHARD ; MCKOWN, REBECCA ; KAILATH, RESHMA ; MORRIS, SUSAN ; CHAMBERS, ADAM ; GRAVES, LEO P. ; WALKER, SUSAN L. ; DASTJERDI, AKBAR ; EDWARDS, KATIE L. ; Nakaya, Helder I. ; STEINBACH, FALKO. A safe, T cell-inducing heterologous vaccine against elephant endotheliotropic herpesvirus in a proof-of-concept study. Nature Communications. v. 16, p. 1, 2025. Qualis: A1
64.	MARACAJA-COUTINHO, VINICIUS ; Nakaya, Helder I.. Single-cell research in Latin America and the Caribbean builds genomics datasets for equitable AI-powered precision medicine. NATURE REVIEWS MOLECULAR CELL BIOLOGY. v. 1, p. 1, 2025. Qualis: Não identificado (NATURE REVIEWS MOLECULAR CELL BIOLOGY)
65.	MARQUES-NETO, LÁZARO M. ; TRENTINI, MONALISA M. ; MORENO, ANA CAROLINA R. ; ETO, SILAS F. ; CARVALHO, ANA CAROLINA O. ; NETO, ALMIRO P.S. ; AMARAL, MURILO S. ; MARTINS, ANDRÉ G. C. ; GONÇALVES, ANDRÉ N. A. ; CHUDZINSKI-TAVASSI, ANA MARISA ; KANNO, ALEX I. ; TAGLIABUE, ALDO ; BORASCHI, DIANA ; Verjovski-Almeida, Sergio ; NAKAYA, HELDER ; Farias, Leonardo P. ; RAMOS, PABLO I. P. ; LEITE, LUCIANA C. C.. rBCG-LTAK63 enhances protection against tuberculosis by inducing autophagy and circadian gene regulation. Frontiers in Immunology. v. 16, p. 1695560, 2025. Qualis: A1
66.	MAURICIO, SARAH KLOCK ; BRENTANI, HELENA ; PORTOLESE, JOANA ; MADANELO, LUCIANA ; MACHADO-LIMA, ARIANE ; NUNES, LIMA FÁTIMA L. S.. An algorithm for deduplication and insurance of quality in a database for ASD diagnosis: proposal and qualitative evaluation. Em: Anais Estendidos do Simpósio Brasileiro de Computação Aplicada à Saúde, 2025, Brasil. Anais Estendidos do XXV Simpósio Brasileiro de Computação Aplicada à Saúde (SBCAS 2025), p. 7-12, 2025. Qualis: Não identificado (ANAIS ESTENDIDOS DO SIMPÓSIO BRASILEIRO DE COMPUTAÇÃO APLICADA À SAÚDE, 2025, BRASIL. ANAIS ESTENDIDOS DO XXV SIMPÓSIO BRASILEIRO DE COMPUTAÇÃO APLICADA À SAÚDE)
67.	MILLER, MICHELE ; GÓMEZ, MARIA ADELAIDA ; TANNER, RACHEL ; VERMAAK, SAMANTHA ; VILLARREAL-RAMOS, BERNARDO ; ALMUJRI, SALEM ; BLANCO, FEDERICO ; BOUSSOFFARA, THOURAYA ; BURCHMORE, RICHARD ; BUSS, PETER ; DE KLERK-LORIST, LIN-MARI ; DIB, JUAN CARLOS ; ECHAVARRÍA, MARIA ; GHELMETTI, GIOVANNI ; GIBSON, AMANDA ; GOMEZ, MARIA ADELAIDA ; GOOSEN, WYNAND ; GORMLEY, EAMONN ; GORTAZAR, CHRISTIAN ; GUIMARÃES, ANA MARCIA ; et.al. Workshop report: One Health challenges and knowledge gaps in the control of intracellular infections with a focus on tuberculosis and leishmaniasis. VACCINE. v. 53, p. 126929, 2025. Qualis: A2
68.	MUNHOZ, DANIELLE DIAS ; FONSECA, DENNYSON LEANDRO M. ; FILGUEIRAS, IGOR SALERNO ; DIAS, HAROLDO DUTRA ; Nakaya, Helder I. ; JURISICA, IGOR ; OCHS, HANS D. ; SCHIMKE, LENA F. ; RIZZO, LUIZ VICENTE ; CABRAL-MARQUES, OTAVIO. Integrative immunology identified interferome signatures in uveitis and systemic disease-associated uveitis. Frontiers in Immunology. v. 16, p. 1, 2025. Qualis: A1
69.	Nakaya, Helder I. AI will create the next generation of user-friendly interfaces. NATURE REVIEWS MOLECULAR CELL BIOLOGY. v. 1, p. 1, 2025. Qualis: Não identificado (NATURE REVIEWS MOLECULAR CELL BIOLOGY)
70.	NAKAYA, HELDER I. Keynote speaker do XX Encontro Mineiro de Biomedicina @ Uberaba MG. 2025. Apresentação de Trabalho/Simpósio
71.	NAKAYA, HELDER I. Palestra de Abertura da Jornada Científica do Instituto René Rachou @ Fiocruz Minas. 2025. Apresentação de Trabalho/Simpósio
72.	NAKAYA, HELDER I. Seminários do Departamento de Bioquímica IQ-USP @ USP-SP. 2025. Apresentação de Trabalho/Seminário
73.	NAKAYA, HELDER I. Apresentação do projeto 'Saúde de Precisão' na Semana de Ciência, Tecnologia e Inovação para o SUS @ Brasília. 2025. Apresentação de Trabalho/Conferência ou palestra
74.	NAKAYA, HELDER I. Apresentação do projeto 'IA contra FakeNews' na Semana de Ciência, Tecnologia e Inovação para o SUS @ Brasília. 2025. Apresentação de Trabalho/Conferência ou palestra
75.	NAKAYA, HELDER I. Citometria espectral integrada a transcriptômica em doenças genéticas raras do sistema imune @ RJ. 2025. Apresentação de Trabalho/Simpósio
76.	NAKAYA, HELDER I. Apresentação para a Marinha do Brasil @ Instituto de Pesquisa Albert Einstein. 2025. Apresentação de Trabalho/Seminário
77.	NAKAYA, HELDER I. Seminário no Simpósio Transdisciplinar: Mudanças Climáticas, Doenças Infecciosas @ FioCruz Minas. 2025. Apresentação de Trabalho/Simpósio
78.	NAKAYA, HELDER I. Palestrante convidado da 7ª edição do GBMeeting @ UNICAMP. 2025. Apresentação de Trabalho/Simpósio
79.	NAKAYA, HELDER I. Keynote speaker do Berlin Summer Meeting @ Alemanha. 2025. Apresentação de Trabalho/Simpósio
80.	NAKAYA, HELDER I. II SIMPÓSIO DE EMTN: NUTRIÇÃO À FRENTE DO NOSSO TEMPO @ Hospital Samaritano. 2025. Apresentação de Trabalho/Simpósio
81.	NAKAYA, HELDER I. Seminários do Butantan - O Impacto da IA na Pesquisa Biomédica @ Butantan. 2025. Apresentação de Trabalho/Seminário
82.	NAKAYA, HELDER I. Palestrante para turmas de Iniciação Científica @ Instituto de Pesquisa Albert Einstein. 2025. Apresentação de Trabalho/Seminário
83.	NAKAYA, HELDER I. VIII Simpósio Internacional de Acessos Vasculares e Terapia Infusional @ SP. 2025. Apresentação de Trabalho/Simpósio
84.	NAKAYA, HELDER I. Speaker of FAPESP SÃO PAULO SCHOOL OF ADVANCED SCIENCE ON PRECISION HEALTH: BUILDING BRIDGES BETWEEN VETERINARY AND HUMAN MEDICINE @ SP. 2025. Apresentação de Trabalho/Simpósio
85.	NAKAYA, HELDER I. Speaker do Innovation and Science Diplomacy School InnSciD 2025 @ SP. 2025. Apresentação de Trabalho/Simpósio
86.	NAKAYA, HELDER I. III Workshop dos Pós-doutorandos da FCFRP-USP e FCF-USP @ Ribeirão Preto. 2025. Apresentação de Trabalho/Simpósio
87.	NAKAYA, HELDER I. Speaker do International Congress of the Brazilian Genetics Society (SBG) @ Belém. 2025. Apresentação de Trabalho/Congresso
88.	NAKAYA, HELDER I. Palestrante do evento de ideação @ INOVA USP. 2025. Apresentação de Trabalho/Simpósio
89.	NAKAYA, HELDER I. Palestrante na Genesis Genomics @ SP. 2025. Apresentação de Trabalho/Seminário
90.	NAKAYA, HELDER I. Simpósio de Tecnologias Integradas para Análises Ômicas em Single-Cell @ LaCTAD, Campinas. 2025. Apresentação de Trabalho/Simpósio
91.	NAKAYA, HELDER I. Escola Paulista de Medicina no Congresso Acadêmico Unifesp @ SP. 2025. Apresentação de Trabalho/Congresso
92.	NAKAYA, HELDER I. IX Simpósio Anual da Rede Fio-Câncer @ RJ. 2025. Apresentação de Trabalho/Simpósio
93.	NAKAYA, HELDER I. Speaker of LymphoRioMove @ RJ. 2025. Apresentação de Trabalho/Simpósio
94.	NAKAYA, HELDER I. II Congresso de Pós-Doutorandos da USP @ USP-SP. 2025. Apresentação de Trabalho/Congresso
95.	NAKAYA, HELDER I. CoIAI workshop Immunology and molecular microbiology @ University of Oxford, Inglaterra. 2025. Apresentação de Trabalho/Simpósio
96.	NAKAYA, HELDER I. Speaker of MGH Transplant Immunology Series @ Massachusetts General Hospital, Harvard. 2025. Apresentação de Trabalho/Seminário
97.	NAKAYA, HELDER I. Conferências Genomas SUS @ Online. 2025. Apresentação de Trabalho/Seminário
98.	NAKAYA, HELDER I. International Symposium on Spatiotemporal Omics for Infectious Diseases in Beijing @ China. 2025. Apresentação de Trabalho/Simpósio
99.	NAKAYA, HELDER I. Speaker at China National Center for Bioinformation (CNCB) @ Chinese Academy of Sciences. 2025. Apresentação de Trabalho/Seminário
100.	NAKAYA, HELDER I. Keynote Speaker of HIC-Vac Annual Meeting @ University of Oxford, Inglaterra. 2025. Apresentação de Trabalho/Simpósio
101.	NAKAYA, HELDER I. VIVA USP: Open House do InovaUSP @ SP. 2025. Apresentação de Trabalho/Simpósio
102.	NAKAYA, HELDER I. Palestra de encerramento da 5ª Jornada de Iniciação Científica (JIC) @ Einstein. 2025. Apresentação de Trabalho/Simpósio
103.	NAKAYA, HELDER I. Simpósio Internacional de Iniciação Científica e Tecnológica da USP. 2025. Apresentação de Trabalho/Simpósio
104.	NAKAYA, HELDER I. Palestra de abertura do SIICUSP Simpósio Internacional de Iniciação Científica e Tecnológica da USP @ USP RP. 2025. Apresentação de Trabalho/Simpósio
105.	NAKAYA, HELDER I. 11o Workshop de Farmacologia da FMRP @ USP RP. 2025. Apresentação de Trabalho/Simpósio
106.	NAKAYA, HELDER I. Speaker of Satellite Symposium on Vaccines - SBI @ Búzios. 2025. Apresentação de Trabalho/Congresso
107.	NAKAYA, HELDER I. Speaker of 49º Congresso da Sociedade Brasileira de Imunologia (SBI) @ Búzios. 2025. Apresentação de Trabalho/Congresso
108.	NAKAYA, HELDER I. Speaker at GLOBAL HEALTH IN TROPICAL REGIONS: PERSPECTIVES FROM LATIN AMERICA AND WEST AFRICA IN A CHANGING WORLD @ Pasteur Network. 2025. Apresentação de Trabalho/Simpósio
109.	NAKAYA, HELDER I. Palestrante do Encontro de Docentes USP 2025 @ USP SP. 2025. Apresentação de Trabalho/Simpósio
110.	NAKAYA, HELDER I. Palestrante para Universidade Federal de Goias (UFG) @ Goiania. 2025. Apresentação de Trabalho/Seminário
111.	NAKAYA, HELDER I. Speaker of 15th International Congress of Pharmaceutical Sciences (CIFARP 2025) @ Ribeirão Preto. 2025. Apresentação de Trabalho/Congresso
112.	NAKAYA, HELDER I. Palestrante para PRÁTICAS E MÉTODOS EM PESQUISA BÁSICA E APLICADA @ Insper. 2025. Apresentação de Trabalho/Seminário
113.	NAKAYA, HELDER I. Speaker of Congresso da Sociedade Brasileira de Medicina Tropical (SBMT) - MEDTROP @ João Pessoa. 2025. Apresentação de Trabalho/Congresso
114.	NAKAYA, HELDER I. Speaker of AI4Bio Global South Summit @ Goiania. 2025. Apresentação de Trabalho/Simpósio
115.	NAKAYA, HELDER I. Palestrante do Instituto de Estudos Avançados @ Mackenzie. 2025. Apresentação de Trabalho/Seminário
116.	NAKAYA, HELDER I. Simpósio Satélite ?Inteligência Artificial e Câncer: avanços e desafios? @ UFRJ. 2025. Apresentação de Trabalho/Simpósio
117.	NAKAYA, HELDER I. Speaker of III International Meeting in Oncology Research INCA @ RJ. 2025. Apresentação de Trabalho/Simpósio
118.	NAKAYA, HELDER I. Palestra de encerramento da XXIV Reunião Científica Anual do Instituto Butantan. 2025. Apresentação de Trabalho/Congresso
119.	NAKAYA, HELDER I. IV Sessão Interativa de Pesquisa ? ?Horizontes da Pesquisa: Conexões entre Assistência e Pesquisa' @ Instituto de Pesquisa Albert Einstein. 2025. Apresentação de Trabalho/Simpósio
120.	NAKAYA, HELDER I. Palestra para Cientistas do Amanhã Einstein. 2025. Apresentação de Trabalho/Outra
121.	NAKAYA, HELDER TAKASHI IMOTO. Institut Pasteur Paris@Systems Immunology at Spatial Resolution. 2025. Apresentação de Trabalho/Seminário
122.	NAKAYA, HELDER TAKASHI IMOTO. Albert Einstein and Case Western Scientific Meeting@Network Vaccinology: a key structure and function in vaccine-induced immunity. 2025. Apresentação de Trabalho/Seminário
123.	NAKAYA, HELDER TAKASHI IMOTO. AULA MAGNA DA PÓS-GRADUAÇÃO DO ICB@UFMG. 2025. Apresentação de Trabalho/Seminário
124.	NAKAYA, HELDER TAKASHI IMOTO. Keynote speaker at BIG Research@Vancouver, Canadá. 2025. Apresentação de Trabalho/Conferência ou palestra
125.	NAKAYA, HELDER TAKASHI IMOTO. Workshop sobre Política Científica BioMed21@Brasília. 2025. Apresentação de Trabalho/Simpósio
126.	NAKAYA, HELDER TAKASHI IMOTO. Aula Inaugural do Programa de Pós-Graduação em Medicina Tropical (PPGMT/UEA)@Manaus. 2025. Apresentação de Trabalho/Seminário
127.	NASCIMENTO, JÉSSICA C. ; GONÇALVES, ANDRÉ N. A. ; AKASHI, KAREN T. ; Nakaya, Helder I. ; SILVEIRA, EDUARDO L. V.. Activation of the IDO1-GCN2-ATF4-CHOP Pathway During the Massive Generation of Antibody-Secreting Cells in Dengue Patients Through Single-Cell Transcriptomics. International Journal Of Tryptophan Research. v. 18, p. 1, 2025. Qualis: Não identificado (INTERNATIONAL JOURNAL OF TRYPTOPHAN RESEARCH)
128.	NASCIMENTO, M. G. C. ; KOIDE, T.. Alternative DNA structures and transcriptional regulation in Halobacterium salinarum NRC-1. 2025. Apresentação de Trabalho/Outra
129.	NASPOLINI, NATHALIA F. ; SCHÜROFF, PAULO A. ; VANZELE, PEDRO A. R. ; PEREIRA-SANTOS, DAVI ; VALIM, TAMIRES AMABILI ; BONHAM, KEVIN S. ; Fujita, André ; PASSOS-BUENO, MARIA RITA ; BELTRÃO-BRAGA, PATRICIA C. B. ; CARVALHO, ANDRÉ C. P. L. F. ; KLEPAC-CERAJ, VANJA ; POLANCZYK, GUILHERME V. ; CAMPOS, ALLINE C. ; TADDEI, CARLA R.. Exclusive breastfeeding is associated with the gut microbiome maturation in infants according to delivery mode. Gut Microbes. v. 17, p. 2493900, 2025. Qualis: A1
130.	NAVA, ROSEANE GALDIOLI ; ADRI, ANNY SILVA ; FILGUEIRAS, IGOR SALERNO ; NÓBILE, ADRIEL LEAL ; BARCELOS, PEDRO MARÇAL ; CORRÊA, YOHAN LUCAS GONÇALVES ; DE OLIVEIRA, SERGIO FELIPE ; CABRAL-MIRANDA, GUSTAVO ; DIAS, HAROLDO DUTRA ; SCHIMKE, LENA F. ; DE ARAÚJO GLEIZER, RENÉ ; DALMOLIN, RODRIGO JULIANI SIQUEIRA ; Nakaya, Helder I. ; REZENDE, RAFAEL MACHADO ; CABRAL-MARQUES, OTAVIO. Modulation of neuroimmune cytokine networks by antidepressants: implications in mood regulation. Translational Psychiatry. v. 15, p. 1, 2025. Qualis: A1
131.	NUNES, KELLY ; ARAÚJO CASTRO E SILVA, MARCOS ; RODRIGUES, MAÍRA R. ; LEMES, RENAN BARBOSA ; PEZO-VALDERRAMA, PATRICIO ; KIMURA, LILIAN ; DE SENA, LUCAS SCHENATTO ; KRIEGER, JOSÉ EDUARDO ; CATOIA VARELA, MARGARETH ; DE AZEVEDO, LUIZ OTÁVIO ; ARANHA CAMARGO, LUIS MARCELO ; FERREIRA, RICARDO G. M. ; KRIEGER, HENRIQUE ; Bortolini, Maria Cátira ; MILL, JOSÉ GERALDO ; SACUENA, PUTIRA ; GUERREIRO, JOÃO F. ; DE SOUZA, CELIA M. B. ; VERONESE, FRANCISCO V. ; HÜNEMEIER, T. ; et.al. Admixture?s impact on Brazilian population evolution and health. SCIENCE. v. 388, p. 000-000, 2025. Qualis: A1
132.	OLIVEIRA, N. S. ; de souza RF ; KOIDE, T.. Conservation of intraRNAs in prokariotic transcriptomes and translation of novel protein isoforms. 2025. Apresentação de Trabalho/Outra
133.	OLIVOS-CAICEDO, KELLY Y. ; FERNANDEZ-MATERAN, FRANCELYS V. ; DANIEL, STEVEN L. ; ANANTHARAMAN, KARTHIK ; RIDLON, JASON M. ; Alves, João M. P.. Pangenome Analysis of Clostridium scindens: A Collection of Diverse Bile Acid- and Steroid-Metabolizing Commensal Gut Bacterial Strains. Microorganisms. v. 13, p. 857, 2025. Qualis: B1
134.	ORDOÑEZ, WILLIAN ORLANDO CASTILLO ; PALOMINO, NILZA VELASCO ; VARELA, PATRICIA EUGENIA VÉLEZ ; MARTÍNEZ, IVON BOLAÑOS ; Alves, Levy Bueno ; Giuliatti, Silvana. Alkaloids from Caliphruria subedentata (Amaryllidaceae) as Regulators of AChE, BuChE, NMDA and GSK3 Activity: An In Vitro and In Silico Approach for Mimicking Alzheimer´s Disease. NEUROCHEMICAL RESEARCH. v. 50, p. 116, 2025. Qualis: A3
135.	PAGLIUSO, D. ; Grandis, A. ; SANTOS, D. G. ; FERREIRA, C. ; TERRA, W. R. ; CARDOSO, C. ; PIMENTEL, A. C. ; FUZITA, F. J. ; PEREIRA, J. ; RAMOS, I. ; QUEZIA, L. ; BAHIA, A. C. ; HEISE, N. ; BUCKERIDGE, M. S. ; MACHADO, E. A.. Sugarcane Bagasse Polysaccharides Decomposition by the Cockroach Digestive System. Bioenergy Research. v. 18, p. 69-81, 2025. Qualis: A1
136.	PAGLIUSO, DÉBORA ; GRANDIS, Adriana ; DE CASTRO JURASKI, AMANDA ; AZZONI, ADRIANO RODRIGUES ; TEIXEIRA DE MORAIS POLIZELI, MARIA DE LOURDES ; VILLANUEVA, HELIO HENRIQUE ; KRIEGER FILHO, GUENTHER CARLOS ; SILVEIRA BUCKERIDGE, MARCOS. Fingerprinting Agro-Industrial Waste: Using Polysaccharides from Cell Walls to Biomaterials. Sustainability. v. 17, p. 6362, 2025. Qualis: A1
137.	PARTIDA, VANIA GABRIELA SEDANO ; DIAS, HENRIQUE MOURA ; PORTES, MARIA TERESA ; Van Sluys, Marie-Anne. The genetic puzzle of multicopy genes: challenges and troubleshooting. Plant Methods. v. 21, p. 32, 2025. Qualis: A1
138.	Pasqualini, Renata ; MARKOSIAN, CHRISTOPHER ; STAQUICINI, DANIELA I. ; DOBROFF, ANDREY S. ; DODERO-ROJAS, ESTEBAN ; WHITFORD, PAUL C. ; BARBU, E. MAGDA ; BRONK, JULIANNA K. ; CARDÓ-VILA, MARINA ; CHRISTIANSON, DAWN R. ; DIAS-NETO, Emmanuel ; DRIESSEN, WOUTER H.P. ; GUZMAN-ROJAS, LILIANA ; MARCHIÒ, SERENA ; Nunes, Diana N. ; DE OLIVEIRA, FRANCISLON S. ; OZAWA, MICHAEL G. ; PRONETH, BETTINA ; RANGEL, ROBERTO ; SETUBAL, J. C. ; et.al. Conformational ligand-directed targeting of calcium-dependent receptors in acute trauma. Med. v. 6, p. 100638, 2025. Qualis: Não identificado (MED)
139.	PICINATO, BEATRIZ A. ; FRANCESCHINI-SANTOS, VINÍCIUS H. ; ZARAMELA, LÍVIA S. ; VÊNCIO, RICARDO Z. N. ; Koide, Tie. Archaea express circular isoforms of IS200/IS605-associated ωRNAs. Frontiers in Microbiology. v. 16, p. fmicb.2025.1641, 2025. Qualis: A1
140.	PICINATO, BEATRIZ A. ; Santos, VHF ; Vencio, R. Z. N. ; ZARAMELA, LIVIA S. ; KOIDE, T.. Characterization of archaeal IS200/IS605 TnpBs and their circular ωRNAs. 2025. Apresentação de Trabalho/Conferência ou palestra
141.	POSSIK, PATRICIA A. ; ADAMS, DAVID J. ; AGUIAR, FLAVIA C. ; ALVES, TAMIRES CAIXETA ; ALVES-HANNA, FABÍOLA S. ; RESTREPO ARBOLEDA, CARLOS MARIO ; ARMINGOL, ERICK ; ARRUDA, LIÃ BÁRBARA ; ASTROZ, YESID CUESTA ; BOCCACINO, JACQUELINE M. ; BONFIM, DANIELLE C. ; CALDERON, JUAN F. ; MURILLO CARRASCO, ALEXIS GERMÁN ; CARVALHO, DANIELLE G. ; CARVALHO, BENILTON S. ; SANCHES DALTRO DE CARVALHO, PAULO VINÍCIUS ; CASTRO, ALEX ; CHAPPELL, LIA ; CHINCHILLA-MONGE, RICARDO ; NAKAYA, H. I. ; et.al. Exploring Latin America one cell at a time. CELL. v. 188, p. 5790-5796, 2025. Qualis: A1
142.	PRATES-SYED, WASIM ALUÍSIO ; FONSECA, DENNYSON LEANDRO MATHIAS DA ; POUR, SHAHAB ZAKI ; LIRA, ALINE ; CORTES, NELSON ; SILVA, JAQUELINE DINIS QUEIROZ ; CARVALHO, EVELYN ; FILGUEIRAS, IGOR SALERNO ; VINCES, TANIA GERALDINE CHURASCARI ; SCHIMKE, LENA F. ; CHAVES, LORENA C. S. ; WUNDERLICH, GERHARD ; DURÃES-CARVALHO, RICARDO ; DIAS, HAROLDO DUTRA ; OCHS, HANS D. ; CÂMARA, NIELS O. S. ; Nakaya, Helder I. ; KRIEGER, JOSÉ E. ; CABRAL-MARQUES, OTAVIO ; CABRAL-MIRANDA, GUSTAVO ; et.al. COVID-19 vaccination atlas using an integrative systems vaccinology approach. npj Vaccines. v. 10, p. 1, 2025. Qualis: Não identificado (NPJ VACCINES)
143.	QUINTERO-RUIZ, NATHALIA ; CORRADI, CAMILA ; MORENO, NATÁLIA CESTARI ; DE SOUZA, TIAGO ANTONIO ; Menck, Carlos Frederico Martins. UVA-light-induced mutagenesis in the exome of human nucleotide excision repair-deficient cells. PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES. v. 24, p. 429-449, 2025. Qualis: A3
144.	RAMUNDO, MARIANA SEVERO ; DA FONSECA, GUILHERME CORDENONSI ; TEN-CATEN, FELIPE ; GERBER, ALEXANDRA L. ; GUIMARÃES, ANA PAULA ; MANULI, ERIKA REGINA ; CÔRTES, MARINA FARREL ; PEREIRA, GEOVANA MARIA ; BRUSTOLINI, OTAVIO ; CABRAL, MILENA GOMES ; DOS SANTOS LÁZARI, CAROLINA ; BRASIL, PATRÍCIA ; DA SILVEIRA BRESSAN, CLARISSE ; Nakaya, Helder I. ; PARANHOS-BACCALÀ, GLÁUCIA ; VASCONCELOS, ANA TEREZA R. ; SABINO, ESTER CERDEIRA. Transcriptomic insights into early mechanisms underlying post-chikungunya chronic inflammatory joint disease. Scientific Reports. v. 15, p. 1, 2025. Qualis: A2
145.	RIBEIRO, ADÈLE HELENA ; SOLER, JÚLIA M. P. ; CORDER, RODRIGO M. ; FERREIRA, MARCELO U. ; HEIDER, DOMINIK. From bites to bytes: understanding how and why individual malaria risk varies using artificial intelligence and causal inference. Frontiers in Genetics. v. 16, p. 01-06, 2025. Qualis: A2
146.	RIBEIRO, DIEGO LUIS ; LONDERO, JAMES EDUARDO LAGO ; MARTINS, DAVI JARDIM ; Menck, Carlos Frederico Martins. Alkaline Bromodeoxyuridine (BrdU) Comet Assay to Detect Replication-Associated DNA Damage. Current Protocols. v. 5, p. e70275, 2025. Qualis: Não identificado (CURRENT PROTOCOLS)
147.	RICOLDI, M. C. ; KOIDE, T.. Optimization of Halobacterium salinarum gas vesicles as contrast agents in ultrasound imaging. 2025. Apresentação de Trabalho/Outra
148.	ROMIM, GRAYCE HELLEN ; TAVARES, EVELINE Q P ; GRANDIS, Adriana ; DE OLIVEIRA, LAUANA P ; DEMARCO, DIEGO ; GRAMEGNA, GIOVANNA ; MIRA, WILLIAM V M ; NAVARRO, BRUNO V ; BUCKERIDGE, MARCOS S. Exploring the Role of β-1,3-Glucanase in Aerenchyma Development in Sugarcane Roots. ANNALS OF BOTANY. v. 137, p. 111-124, 2025. Qualis: A1
149.	SANCHEZ, ANGÉLICA BIANCHINI ; LEMES, CAMILA GRACYELLE DE CARVALHO ; CORDEIRO, ISABELLA FERREIRA ; CANESCHI, WASHINGTON LUIZ ; BARBOSA, ÉRICA FELESTRINO ; DE PAULA, CAMILA HENRIQUES ; DA SILVA, ANA KARLA ; RIBEIRO, DILSON FAGUNDES ; DE MATOS, ROSILENE CRISTINA ; DE MATOS, JÉSSICA PEREIRA ; ROCHA, LORRANA CACHUITE MENDES ; DAMASCENO, MARIA ROSILENE ALVES ; GARCIA, CAMILA CARRIÃO MACHADO ; SETUBAL, JOÃO CARLOS ; DE MELLO VARANI, ALESSANDRO ; ALMEIDA, NALVO FRANCO ; MOREIRA, LEANDRO MARCIO. Genomic characterization of Staphylococcus epidermidis Se252 isolated from the rhizosphere of a Brazilian endemic plant. BMC GENOMICS. v. 1, p. s12864-025-1221, 2025. Qualis: A2
150.	Setubal, João C.; PACCANARO, ALBERTO. Editorial: Expert opinions in genomic analysis. Frontiers In Bioinformatics. v. 5, p. 1641083, 2025. Qualis: Não identificado (FRONTIERS IN BIOINFORMATICS)
151.	SILVA, DENNIS J. ; KOSINKA, JI'Í ; HASHIMOTO, RONALDO F. ; ROERDINK, JOS B.T.M. ; MORIMITSU, ALEXANDRE ; ALVES, WONDER A.L.. Incremental component tree contour computation. PATTERN RECOGNITION LETTERS. v. 187, p. 115-121, 2025. Qualis: A2
152.	SILVA, DENNIS J. ; MIRANDA, PAULO A. V. ; ALVES, WONDER A. L. ; HASHIMOTO, RONALDO F. ; KOSINKA, JI'Í ; Roerdink, Jos B. T. M.. Efficient Maximum Euclidean Distance Transform Computation in Component Trees Using the Differential Image Foresting Transform. JOURNAL OF MATHEMATICAL IMAGING AND VISION. v. 67, p. 31, 2025. Qualis: A1
153.	SILVA, R. L. C. G. ; WANG, N. ; Barroso da Silva, Fernando L. ; PETRI, D. F. S.. The role of charge regulation on casein-chitosan complexation at low pH. RCS. 2025. Artigo submetido
154.	SILVA-SOUSA, THAYNA ; NAKANISHI USUDA, JÚLIA ; AL-ARAWE, NADA ; HINTERSEHER, IRENE ; CATAR, RUSAN ; LUECHT, CHRISTIAN ; VALLECILLO GARCIA, PEDRO ; RIESNER, KATARINA ; HACKEL, ALEXANDER ; SCHIMKE, LENA F ; DUTRA DIAS, HAROLDO ; SALERNO FILGUEIRAS, IGOR ; Nakaya, Helder I ; CAMARA, NIELS OLSEN SARAIVA ; FISCHER, STEFAN ; RIEMEKASTEN, GABRIELA ; RINGDÉN, OLLE ; PENACK, OLAF ; WINKLER, TOBIAS ; DUDA, GEORG ; et.al. Artificial intelligence and systems biology analysis in stem cell research and therapeutics development. Stem Cells Translational Medicine. v. 14, p. 1, 2025. Qualis: A1
155.	TAHIRA, ANA C. ; GOMES, MARIANA P. B. ; FREIRE, MARIA HELOISA ; MUXFELDT, MARCELLY ; PROSDOCIMI, FRANCISCO ; PASSOS, YULLI M. ; SENA AMARAL, MURILO ; FELIX VALADÃO, LETICIA P. ; RANGEL, LUCIANA P. ; SILVA, JERSON L. ; Verjovski-Almeida, Sergio ; CORDEIRO, YRAIMA. RNA-seq analyses reveal the relevance of RNAs involved in ribosomal complex to induce mammalian prion protein aggregation and phase separation. RNA Biology. v. 22, p. 1-16, 2025. Qualis: A2
156.	TRIBET, C. ; BRASSART, P. ; Barroso da Silva, Fernando L.. Anomalous binding Affinity of Poly(glutamate)-Monoclonal Antibody Complexes at acidic pH: Insights from comparison between Experiments and Theoretical Modeling. ACS. 2025. Artigo submetido
157.	TULLUME-VERGARA, PERCY OMAR ; LUDWIG, ADRIANA ; YURCHENKO, VYACHESLAV ; COELHO, ADRIANO CAPPELLAZZO ; COSER, ELIZABETH MAGIOLO ; KRIEGER, MARCO AURÉLIO ; TEIXEIRA, MARTA M.G. ; SHAW, JEFFREY JON ; ALVES, JOAO M.P.. Comparative analysis of the mobilome yields new insights into its diversity, dynamics and evolution in parasites of the Trypanosomatidae family. PARASITOLOGY. v. 152, p. 1-16, 2025. Qualis: A2
158.	VALOTTO, R. S. ; LYRA JUNIOR, P. C. M. ; AVILA, R. A. M. ; CAMPOS, F. V. ; COSTA, D. S. ; GUIMARAES, M. C. C. ; Barroso da Silva, Fernando L.. Consensus-Based Computational Mapping of NS1 Antigenic Determinants in Dengue and Zika Viruses to Improve Diagnostic Specificity. Bmc Infectious Diseases. 2025. Qualis: A3
159.	Van Sluys MA. A evolução dos organismos fotossintetizantes. 2025. Apresentação de Trabalho/Simpósio
160.	Van Sluys, M. A. CIÊNCIA ABERTA: COMO AVANÇAR? UM OLHAR DA PRÁTICA DA CIÊNCIA. 2025. Apresentação de Trabalho/Simpósio
161.	Van Sluys, Marie Anne. Introduction to TE Biology: dynamics and fucntions. 2025. Apresentação de Trabalho/Conferência ou palestra
162.	VERAS, M. ; Van Sluys M.A. ; SALDIVA, P.. Climate change and Health: an urban approach. Em: MCTI. (Org.). Climate Change and Brazil. 1ed.BrasiliaI. : IBICT. 2025.v. 1, p. 358-364.
163.	VISNARDI, ALINE BIAZOLA ; RIBEIRO, RODOLFO ALVARENGA ; DE SOUZA, ANACLETO SILVA ; CHURASACARI VINCES, TANIA GERALDINE ; LLONTOP, EDGAR E. ; DE ALMEIDA FERRARI, ANIELLE SALVIANO ; FRANÇA HENRIQUE, PEDRO ANTÔNIO ; VALDIVIESO, DANIELA ; SÁNCHEZ-LIMACHE, DANIEL ENRIQUE ; SILVA, GABRIELA ROBERTO ; SOARES, EDUARDO PEREIRA ; SANTOS, THOMAS WITTMANN CEZAR ; FARAH, CHUCK SHAKER ; SASSONIA, ROGERIO CORTE ; SALINAS, ROBERTO K. ; GUZZO, CRISTIANE RODRIGUES ; de SOUZA, Robson Francisco. Insertion of a Divergent GAF-like Domain Defines a Novel Family of YcgR Homologues That Bind c-di-GMP in Leptospirales. ACS Omega. v. 10, p. 3988-4006, 2025. Qualis: A3
164.	WANG, TAOJUN ; AHMAD, SAEED ; CRUZ-LEBRÓN, ANGÉLICA ; ERNST, SARAH E. ; OLIVOS CAICEDO, KELLY YOVANI ; JEONG, YOON ; BINION, BRIAWNA ; MBUVI, PAULINE ; DUTTA, DEBAPRIYA ; FERNANDEZ-MATERAN, FRANCELYS V. ; BREISTER, ADAM M. ; TANG, ELIZABETH ; LEE, JAE WON ; KANG, JASON D. ; HARRIS, SPENCER C. ; IKEGAWA, SHIGEO ; GASKINS, H. REX ; ERDMAN, JOHN W. ; YANG, GLEN ; ALVES, J. M. P. ; et.al. An expanded metabolic pathway for androgen production by commensal bacteria. Nature Microbiology. v. 10, p. 1084-1098, 2025. Qualis: A1
165.	WILEY, KYLE S. ; GOUVEIA, GISELE ; CAMILO, CAROLINE ; EUCLYDES, VERÔNICA ; PANTER'BRICK, CATHERINE ; MATIJASEVICH, ALICIA ; FERRARO, ALEXANDRE ARCHANJO ; FRACOLLI, LISLAINE APARECIDA ; CHIESA, ANNA MARIA ; MIGUEL, EURIPEDES CONSTANTINO ; POLANCZYK, GUILHERME V. ; BRENTANI, HELENA. A Preliminary Investigation of Associations Between Traumatic Events Experienced During Pregnancy and Salivary Diurnal Cortisol Levels of Brazilian Adolescent Mothers and Infants. AMERICAN JOURNAL OF HUMAN BIOLOGY. v. 37, p. e70004, 2025. Qualis: A1
166.	ZAMUNÉR, CAIO FELIPE CAVICCHIA ; Carhuaricra-Huaman, Dennis ; RAGUPATHY, ROOBINIDEVI ; REDFERN, JAMES ; RODRIGUEZ-CUEVA, CARMEN L. ; Behlau, Franklin ; ENRIGHT, MARK C. ; FERREIRA, HENRIQUE ; Setubal, João C.. Evolution and spread of Xanthomonas citri subsp. citri in the São Paulo, Brazil, citrus belt inferred from 758 novel genomes. Microbial Genomics. v. 11, p. 1338, 2025. Qualis: B2

2024

1.	ABRAHÃO, MARIANA ; Buckeridge, Marcos S. ; MISSAGIA, CAIO CÉSAR CORRÊA ; DE SOUZA, AMANDA P. ; Alves, Maria Alice S.. Influence of crop size and sugar content on bird fruit feeding patterns on two sympatric Miconia (Melastomataceae) species on a continental island in the Brazilian Atlantic Forest domain. Ornithology Research. v. 32, p. 310, 2024. Qualis: Não identificado (ORNITHOLOGY RESEARCH)
2.	ALABI, AYODELE ; KOKOU, KOSSIWA ; MAHMOUDOU, SAIDOU ; KAVISHNA, RANMALI ; NAKKA, SRAVYA S. ; ROTHENBERGER, SYLVIA ; MUSANGOMUNEI, FUNGAI P. ; OLUBIYI, BISOLA F. ; BIE-ONDO, JUSTE C. ; KABWENDE, ANITA L. ; VELAVAN, THIRUMALAISAMY P. ; MEDAGLINI, DONATA ; Nakaya, Helder I. ; ENGLER, OLIVIER ; HARANDI, ALI M. ; SIEGRIST, CLAIRE-ANNE ; KREMSNER, PETER G. ; AGNANDJI, SELIDJI T.. Replication, safety and immunogenicity of the vectored Ebola vaccine rVSV--G-ZEBOV-GP in a sub-Saharan African paediatric population: A randomised controlled, open-label trial in children aged 1-12 years living in Lambaréné, Gabon. JOURNAL OF INFECTION. v. 89, p. 106237, 2024. Qualis: A2 (THE JOURNAL OF INFECTION)
3.	ALMEIDA, I. ; BRUNO, H. A. ; PINHEIRO, M. M. L. S. ; CARVALHO, A. B. ; VIBRANOVSKI, M. D.. OligoY pipeline allows full Y chromosome painting assays. 2024. Apresentação de Trabalho/Conferência ou palestra
4.	ALVES, L. B. ; FARES, A. S. ; GIULIATTI, S.. Analyzing HLA-DRB1 alleles in susceptibility to multiple sclerosis through molecular dynamics simulations. Em: 20º Congresso Brasileiro de Bioinformática: X-Meeting 2024, 2024, Salvador. 20º Congresso Brasileiro de Bioinformática: X-Meeting 2024, 2024.
5.	ALVES, L. B. ; GIULIATTI, S.. Impact of Point Variations in HLA-DRB1 on the Stability of pHLA Complexes and Susceptibility to Multiple Sclerosis. Em: o ISCB-LATAM SoIBio CCBCOL 2024, 2024, Medellin. o ISCB-LATAM SoIBio CCBCOL 2024, 2024.
6.	ALVES, LEVY B. ; FARES, A. S. ; GIULIATTI, S.. Combinin Molecular Dynamics and Machine Learnin to investiate HLA-DRB1 Alleles in Multiple Sclerosis Susceptibility. Em: 21st IEEE Conerence on Computational Intellience in Bioinormatics and Computational Bioloy, 2024.Qualis: Não identificado (21st IEEE Conerence on Computational Intellience in Bioinormatics and Computational Bioloy)
7.	AMORIM, VITOR MARTINS DE FREITAS ; SOARES, EDUARDO PEREIRA ; FERRARI, ANIELLE SALVIANO DE ALMEIDA ; MERIGHI, DAVI GABRIEL SALUSTIANO ; de SOUZA, Robson Francisco ; GUZZO, CRISTIANE RODRIGUES ; SOUZA, ANACLETO SILVA DE. 3-Chymotrypsin-like Protease (3CLpro) of SARS-CoV-2: Validation as a Molecular Target, Proposal of a Novel Catalytic Mechanism, and Inhibitors in Preclinical and Clinical Trials. Viruses-Basel. v. 16, p. 844, 2024. Qualis: Não identificado (VIRUSES-BASEL)
8.	ARAUJO, S. M. ; ALVES, L. B. ; Guiliatti, S.. Explorando o Antienvelhecimento: Screening Virtual na Busca por Candidatos a Cosmecêuticos Naturais. Em: 32º Simpósio Internacional de Iniciação Científica e Tecnológica da USP - SIICUSP, 2024, Ribeirão Preto, SP. Resumos, v. 32, p. 1-2, 2024.
9.	BARONI, LARA NARDI ; CANJANI, RAFAELA BARBERIS ; BRITO, SAMANTHA CARVALHO MAIA ; ARMELLINI, BARBARA RODRIGUES CINTRA ; OGUSKU, BRUNA SAYURI CARDOSO ; SOUZA, ROBSON FRANCISCO DE ; MORENO, ANA CAROLINA RAMOS ; FERREIRA, RITA DE CÁSSIA CAFÉ. Escherichia coli as a model for evaluating the progress of learning undergraduate students in microbiology. POLÍTICA E GESTÃO EDUCACIONAL (ONLINE). v. 28, p. e023022, 2024. Qualis: A4
10.	BARREIRO, RODRIGO ARAUJO SEQUEIRA ; DE ALMEIDA, TATIANA FERREIRA ; GOMES, CATARINA DOS SANTOS ; MONFARDINI, FREDERICO ; DE FARIAS, ALLYSSON ALLAN ; TUNES, GABRIELA CHIUFFA ; DE SOUZA, GABRIEL MESQUITA ; DUIM, ETIENNE ; DE SÁ CORREIA, JAQUELINE ; CAMPOS COELHO, ANTONIO VICTOR ; CARACIOLO, MARCEL PINHEIRO ; OLIVEIRA DUARTE, YEDA APARECIDA ; ZATZ, MAYANA ; Amaro, Edson ; OLIVEIRA, JOÃO BOSCO ; BITARELLO, BÁRBARA DOMINGUES ; BRENTANI, HELENA ; NASLAVSKY, MICHEL SATYA. Assessing the Risk Stratification of Breast Cancer Polygenic Risk Scores in a Brazilian Cohort. JOURNAL OF MOLECULAR DIAGNOSTICS. v. 26, p. 825-831, 2024. Qualis: Não identificado (JOURNAL OF MOLECULAR DIAGNOSTICS)
11.	barroso da silva, f l. Painel: Computational Approaches, Pitfalls, and Strategies Towards an Optimal Monoclonal Antibody with Enhanced Binding Affinity. 2024. Apresentação de Trabalho/Simpósio
12.	barroso da silva, f l. Palestra convidada: Unlocking the molecular aspects of Zika and SARS-CoV-2 for therapeutical binders: An exploration through computer simulations. 2024. Apresentação de Trabalho/Conferência ou palestra
13.	Barroso da Silva, Fernando L. Palestra convidada - Combining physical-based simulation methods and machine learning approaches for antibody engineering. 2024. Apresentação de Trabalho/Simpósio
14.	Barroso da Silva, Fernando L. Palestra convidada: From Protein Electrostatics to the Computational Modeling of Viruses and Antibody Design in the Era of Machine Learning. 2024. Apresentação de Trabalho/Conferência ou palestra
15.	Barroso da Silva, Fernando L. Palestra convidada: Developing and applying bioinformatic methods with a biophysical approach: from food, biomaterials to virus and antibody design ? v.3.0. 2024. Apresentação de Trabalho/Simpósio
16.	Barroso da Silva, Fernando L. Palestra convidada: Advances in protein electrostatics and computational modeling of viruses and antibody development. 2024. Apresentação de Trabalho/Conferência ou palestra
17.	Barroso da Silva, Fernando L.; ETCHEBEST, CATHERINE ; SANTISO, ERIK ; CORRÊA GIRON, CAROLINA ; GRANDGUILLAUME, I. ; MARQUES, R. B. ; CUEVAS, S. A. P.. The Barroso Research lab: biomolecular interactions, computing, and data-driven science to understand and engineer biological and pharmaceutical systems in a global academic partnership. Journal of Information and Data Management - JIDM. v. 15, p. 242-254., 2024. Qualis: B3
18.	Barroso da Silva, Fernando L.; NEAMTU, A. ; MOCCI, F. ; LAAKSONEN, AATTO. Palestra convidada: Computational Insights and New Strategies for Advanced Antibody Engineering. 2024. Apresentação de Trabalho/Simpósio
19.	BATISTA, BIANCA B. ; DE LIMA, VINICIUS M. ; PICINATO, BEATRIZ A. ; Koide, Tie ; DA SILVA NETO, JOSÉ F.. A quorum-sensing regulatory cascade for siderophore-mediated iron homeostasis in Chromobacterium violaceum. mSystems. v. 9, p. e0139723, 2024. Qualis: A1
20.	BLUME, M. ; WALDMAN, E. A. ; LINDOSO, A. A. B. P. ; RUJULA, M. J. P. ; ORLANDI, G. M. ; OLIVEIRA, M. L. V. ; Guimaraes, A.M.S.. The impact of the SARS-CoV-2 pandemic on tuberculosis notifications and deaths in the state of São Paulo, Brazil: a cross-sectional study. Lancet Regional Health-Americas. v. 35, p. accepted, 2024.Qualis: Não identificado (LANCET REGIONAL HEALTH-AMERICAS)
21.	BLUME, M. ; WALDMAN, E. A. ; LINDOSO, A. A. B. P. ; RUJULA, M. J. P. ; ORLANDI, G. M. ; OLIVEIRA, M. L. V. ; GUIMARÃES, ANA M. S.. O impacto da pandemia de SAR-CoV-2 nas notificações e mortes por tuberculose no estado de São Paulo: um estudo transversal. Em: 59 Congresso Brasileiro de Medicina Tropical (MedTrop), 2024. Resumos do MedTrop2024, 2024.
22.	BORDINI, DANIELA ; MOYA, ANA CLÁUDIA ; ASEVEDO, GRACCIELLE RODRIGUES DA CUNHA ; PAULA, CRISTIANE SILVESTRE ; BRUNONI, DÉCIO ; BRENTANI, HELENA ; CAETANO, SHEILA CAVALCANTE ; MARI, JAIR DE JESUS ; BAGAIOLO, LEILA. Exploring the Acquisition of Social Communication Skills in Children with Autism: Preliminary Findings from Applied Behavior Analysis (ABA), Parent Training, and Video Modeling. BRAIN SCIENCES. v. 14, p. 172, 2024. Qualis: Não identificado (BRAIN SCIENCES)
23.	BRITO, ANITA ; TOCANTINS, FERNANDO RIBEIRO ; BRENTANI, HELENA ; FUJITA, ANDRÉ ; TADDEI, CARLA ROMANO ; BELTRÃO'BRAGA, PATRICIA CRISTINA BALEEIRO. Autism Spectrum and gastrointestinal health: Screening on the influence of environmental factors on gastrointestinal problems. Autism Research. v. 17, p. 2535-2546, 2024. Qualis: Não identificado (AUTISM RESEARCH)
24.	Buckeridge, Marcos S.; PHILIPPI JÚNIOR, ARLINDO. Como ser um eleitor exigente e um candidato ideal. ESTUDOS AVANÇADOS (ONLINE). v. 38, p. 355-366, 2024. Qualis: A1
25.	BUCKERIDGE, MS; PHILIPPI JUNIOR, A.. Agendas para políticas públicas brasileiras: uma contribuição da USP para a sociedade. 1 ed. São Paulo: EDUSP, 2024. v. 1, p. 173.
26.	CAMARGO, N. C. S. ; SILVA-PEREIRA, T. T. ; SANTOS, D. P. ; BRANDAO, A. P. ; PINHATA, J. M. W. ; OLIVEIRA, R. S. ; SILVA, E. C. ; SACCHI, C. T. ; CAMPOS, K. R. ; FERRAZOLI, L. ; Guimaraes, Ana M.S.. BrasSeqTB: A Genomic Pipeline for the Detection of Tuberculosis Drug Resistance in Brazil. Em: X Meeting, 2024, Natal, RN. Resumos - X Meeting, 2024.
27.	CAMARGO, N. C. S. ; SILVA-PEREIRA, T. T. ; SANTOS, D. P. ; BRANDAO, A. P. ; PINHATA, J. M. W. ; OLIVEIRA, R. S. ; SILVA, E. C. ; SACCHI, C. T. ; CAMPOS, K. R. ; GUIMARÃES, A. M. S. ; FERRAZOLI, L.. Resistência antimicrobiana, estrutura populacional e dinâmica da transmissão de isolados de Mycobacterium tuberculosis do estado de São Paulo: um estudo genômico. Em: 59 Congresso Brasileiro de Medicina Tropical (MedTrop), 2024, São Paulo. Resumos do MedTrop2024, 2024.
28.	CARHUARICRA-HUAMAN, DENNIS ; GONZALEZ, IRYS H.L. ; RAMOS, PATRICIA L. ; da Silva, Aline M. ; SETUBAL, JOAO C.. Analysis of twelve genomes of the bacterium from brown-throated sloths ( ), the first from a non-human host. PeerJ. v. 12, p. e17206, 2024. Qualis: A2
29.	Carhuaricra-Huaman, Dennis ; GONZALEZ, IRYS H.L. ; RAMOS, PATRICIA L. ; DA SILVA, ALINE M. ; Setubal, Joao C.. Analysis of twelve genomes of the bacterium Kerstersia gyiorum from brown-throated sloths ( Bradypus variegatus ), the first from a non-human host. PeerJ. v. 12, p. e17206, 2024. Qualis: A2
30.	Carhuaricra-Huaman, Dennis ; SETUBAL, JOÃO CARLOS. Step-by-Step Bacterial Genome Comparison. Methods in Molecular Biology. 1ed. Em: . : Springer US. 2024.v. 2801, p. 107-134.
31.	Carhuaricra-Huaman, Dennis ; SETUBAL, JOÃO CARLOS. Protein-Coding Gene Families in Prokaryote Genome Comparisons. Methods in Molecular Biology. 1ed. Em: . : Springer US. 2024.v. 2802, p. 33-55.
32.	CARVALHO, SYLVESTRE A. ; LAZARO, LIRA L. B. ; YOUNG, ANDREA F. ; COELHO, ROONEY R. A. ; ORTEGA, FÁBIO J. M. ; HECKSHER, CAROLINA B. M. C. ; CARDOSO, JOSÉ R. ; FERREIRA, JOÃO S. W. ; JACOBI, PEDRO R. ; JUNIOR, ARLINDO P. ; Buckeridge, Marcos S.. Assessing the Alignment of Brazilian Local Government Plans with the United Nations’ Sustainable Development Goals. Sustainability. v. 16, p. 10672, 2024. Qualis: A1
33.	CASTILLO-ORDONEZ1, W. O. ; ARISTIZABAL-PACHON, A. F. ; ALVES, L. B. ; Giuliatti, Silvana. Epigenetic regulation exerted byCaliphruria subedentataand galantamine: anin vitroandin silicoapproach for mimic Alzheimer?s disease. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. v. 42, p. 11215-11230, 2024. Qualis: A3
34.	CASTRO GUZMAN, GROVER E. ; FATORI, DANIEL ; FUJITA, A.. Análise de redes. Em: Clarice Gorenstein; Wang Yuan-Pang. (Org.). Instrumentos de Avaliação em Saúde Mental. 2ed.Porto Alegre. : Artmed. 2024.v. 1, p. 73-84.
35.	CATARUCI, AMALIA C. S. ; KAWAMOTO, DIONE ; SHIMABUKURO, NATALI ; ISHIKAWA, KARIN H. ; ANDO-SUGUIMOTO, ELLEN S. ; RIBEIRO, RODOLFO A. ; NICASTRO, GIANLUCCA G. ; ALBUQUERQUE-SOUZA, EMANUEL ; de Souza, Robson F. ; MAYER, MARCIA P. A.. Oral Administration of Lactobacillus acidophilus LA5 Prevents Alveolar Bone Loss and Alters Oral and Gut Microbiomes in a Murine Periodontitis Experimental Model. Microorganisms. v. 12, p. 1057, 2024. Qualis: B1
36.	Cerqueira, Andressa ; ZUANETTI, DAIANE A ; SOLER, JÚLIA MARIA PAVAN. MINICURSO: Análise Estatística de Dados Genômicos. 2024. Apresentação de Trabalho/Congresso
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91.	LUBIANA, TIAGO ; Nakaya, Helder I.. A reasonable request for true data sharing. Lancet Regional Health-Americas. v. 35, p. 100795, 2024. Qualis: Não identificado (LANCET REGIONAL HEALTH-AMERICAS)
92.	LUZ, KLEBER G. ; BEZERRA, FERNANDA R.O. ; SICOLO, MIGUEL A. ; SILVA, ANUSKA A.R.S. ; EGITO, ANDRÉA A. ; SUNIGA, PAULA A.P. ; MORIYA, JÉSSICA C.K. ; SANTOS, MARIA G. ; MANTOVANI, CYNTHIA ; SILVA, JULIA S. ; ALMEIDA, NALVO F. ; GUIMARÃES, ANA MÁRCIA S. ; DÁVILA, ALBERTO M.R. ; JARDIM, RODRIGO ; SANTOS, LENITA R. ; ARAÚJO, FLÁBIO R.. Clinical and Molecular Characterization of Human Burkholderia mallei Infection, Brazil. EMERGING INFECTIOUS DISEASES. v. 30, p. 1-1, 2024. Qualis: A1
93.	MARCOS, ALLEXYA AFFONSO ANTUNES ; FREITAS, DENISE ; HAZARBASSANOV, ROSSEN MIHAYLOV ; FERNANDES, ARTHUR GUSTAVO ; CASTRO, LIGIA PEREIRA ; MELO, DANILO BATISTA VIEIRA DE ; MENCK, CARLOS F. MARTINS ; MORALES, MELINA CORREIA ; GOMES, JOSÉ ÁLVARO PEREIRA ; BELFORT NETO, RUBENS ; SINGH, ARUN D.. Evaluation of Meibomian gland dysfunction using meibography in patients with xeroderma pigmentosum. ARQUIVOS BRASILEIROS DE OFTALMOLOGIA. v. 87, p. e20220319, 2024. Qualis: B1
94.	MARTINS, DAVI JARDIM ; SINGH, JENNY KAUR ; JAHJAH, TIYA ; VESSONI, ALEXANDRE TEIXEIRA ; LEANDRO, GIOVANA DA SILVA ; SILVA, MATHEUS MOLINA ; BIARD, DENIS SERGE FRANÇOIS ; QUINET, ANNABEL ; Menck, Carlos Frederico Martins. Polymerase iota plays a key role during translesion synthesis ofUV-induced lesions in the absence of polymerase eta. PHOTOCHEMISTRY AND PHOTOBIOLOGY. v. 100, p. 4-18, 2024. Qualis: A4
95.	MARTINS, FELIPE DE MELLO ; VIDAL, ALESSANDRA PINHEIRO ; GIDDALURU, JEEVAN ; DA SILVA, BERNARDO MAIA ; LEE, EVA K. ; ZHANG, PEIJUE ; CARDOZO, LUCAS ESTEVES ; PRETE, CARLOS AUGUSTO ; DOMINGUES, HELVES HUMBERTO ; SABINO, ESTER CERDEIRA ; SAMPAIO, VANDERSON DE SOUZA ; MONTEIRO, WUELTON MARCELO ; Nakaya, Helder I. Temporal and spatial analysis of over 7,000 measles cases outbreak from 2018 to 2019 in the Brazilian Amazon. EINSTEIN (SÃO PAULO). v. 22, p. 1, 2024. Qualis: B1
96.	Menck, C. F. M.; M.A. VanSluys. O último ancestral comum: LUCA e a ávore da vida. Em: Carlos F. M. Menck. (Org.). A Evolução é fato. 1ed.Rio de Janeiro. : Academia Brasileira de Ciências. 2024.v. 1, p. 82-89.
97.	Menck, C. F. M.; VAL, A. L.. Introdução: a teoria da evolução é um fato. Em: Carlos F. M. Menck. (Org.). A Evolução é Fato. 1ed.Rio de Janeiro. : Academia Brasileira de Ciências. 2024.v. 1, p. 10-17.
98.	MENCK, C.F.M.; GALHARDO, R.S. ; QUINET, A.. The accurate bypass of pyrimidine dimers by DNA polymerase eta contributes to ultraviolet-induced mutagenesis. MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS. v. 828, p. 111840, 2024. Qualis: Não identificado (MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS)
99.	MENCK, Carlos Frederico Martins ; Val AL ; PENA, S. D. J. ; KELNER, A. W. A. ; DAMINELLI, A. ; CORDANI, U. G. ; FAIRCHILD, T. R. ; BABINSKI, M. ; CUCCOVIA, I. ; CHAIMOVICH, H. ; FARIA, S. T. ; PORFIRIO-SOUSA, A. L. ; LAHR, D. G. ; VAN SLUYS, M A ; OLIVEIRA, Mariana Cabral de ; VERCESI, A. ; RIBEIRO, G. M. ; WINTER, L. ; COLLI, W. ; SOUZA, S. J. ; et.al. A Evolução é fato. 1 ed. Academia Brasileira de Ciências, 2024. v. 1, p. 222.
100.	MENDES, ISABELA CECILIA ; DOS REIS BERTOLDO, WILLIAN ; MIRANDA-JUNIOR, ADALBERTO SALES ; ASSIS, ANTÔNIO VINÍCIUS DE ; REPOLÊS, BRUNO MARÇAL ; FERREIRA, WESLEY ROGER RODRIGUES ; CHAME, DANIELA FERREIRA ; SOUZA, DANIELA DE LAET ; PAVANI, RAPHAEL SOUZA ; MACEDO, ANDREA MARA ; FRANCO, GLÓRIA REGINA ; SERRA, ESTEBAN ; PERDOMO, VIRGINIA ; Menck, Carlos Frederico Martins ; DA SILVA LEANDRO, GIOVANA ; FRAGOSO, STENIO PERDIGÃO ; BARBOSA ELIAS, MARIA CAROLINA QUARTIM ; MACHADO, CARLOS RENATO. DNA lesions that block transcription induce the death of Trypanosoma cruzi via ATR activation, which is dependent on the presence of R-loops. DNA REPAIR. v. 141, p. 103726, 2024. Qualis: A1
101.	MONTEIRO, CÍNTIA J. ; DUARTE, MAX J. ; MACHADO, MAYARA CRISTINA V. ; MASCARENHAS, ROMÁRIO S. ; PALMA, PATRÍCIA V. BONINI ; GARCÍA, HENRY D. MOGOLLÓN ; Nakaya, Helder I. ; CUNHA, THIAGO M. ; DONADI, EDUARDO A. ; PASSOS, GERALDO A.. The single-cell transcriptome of mTECs and CD4+ thymocytes under adhesion revealed heterogeneity of mTECs and a network controlled by Aire and lncRNAs. Frontiers in Immunology. v. 15, p. 1, 2024. Qualis: A1
102.	MORALES-VICENTE, DAVID A ; Tahira, Ana C ; WOELLNER-SANTOS, DAISY ; AMARAL, MURILO S ; BERZOTI-COELHO, MARIA G ; Verjovski-Almeida, Sergio. The human developing cerebral cortex is characterized by an elevated de novo expression of lncRNAs in excitatory neurons. MOLECULAR BIOLOGY AND EVOLUTION. v. 41, p. msae123, 2024. Qualis: A1
103.	MUNER, K. ; KILGOUR, J. ; OMETTO, T. ; BRANDAO, A. P. D. ; DOS SANTOS, A. P. ; Guimaraes, A.M.S.. Cross-sectional study of personal protective equipment use, training and biosafety preparedness among healthcare workers during the first months of the SARS-CoV-2 pandemic in Brazil. BMJ Public Health. v. 2, p. e000654, 2024. Qualis: A2 (BMC PUBLIC HEALTH)
104.	NACHTIGALL, PEDRO G ; DURHAM, ALAN M ; ROKYTA, DARIN R ; JUNQUEIRA-DE-AZEVEDO, INÁCIO L M. ToxCodAn-Genome: an automated pipeline for toxin-gene annotation in genome assembly of venomous lineages. GigaScience. v. 13, p. giad116, 2024. Qualis: A1
105.	NACIMENTO, RAFAEL ARAUJO ; REZENDE, VANESSA THEODORO ; ORTEGA, FÁBIO JOSÉ MUNERATTI ; CARVALHO, SYLVESTRE AURELIANO ; BUCKERIDGE, MARCOS SILVEIRA ; GAMEIRO, AUGUSTO HAUBER ; RENNÓ, FRANCISCO PALMA. Sustainability and Brazilian Agricultural Production: A Bibliometric Analysis. Sustainability. v. 16, p. 1833, 2024. Qualis: A1
106.	NAGAI, ALICE ; LEMES, RENAN BARBOSA ; MILL, JOSÉ GERALDO ; PEREIRA, ALEXANDRE COSTA ; MARQUES, RAFAEL ELIAS ; Hünemeier, Tábita. The seroconversion history to SARS-CoV-2 in Indigenous people from Brazil - the interplay between exposure, vaccination, and tuberculosis. Frontiers in Immunology. v. 15, p. 000-000, 2024. Qualis: A1
107.	NAKAYA, HELDER T. I. IV Simpósio da Pós-Graduação em Biologia de Sistemas @ ICB-USP. Inteligência Artificial - modelos preditivos em câncer. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
108.	NAKAYA, HELDER T. I. Aula Magna do Programa de Pós-graduação em Biotecnologia da Funed @ Belo Horizonte, MG. 2024. Apresentação de Trabalho/Seminário
109.	NAKAYA, HELDER T. I. Sessão especial do Centro de Estudos do IOC @ FioCruz, RJ. SEMANA DE ABERTURA DO ANO ACADÊMICO. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
110.	NAKAYA, HELDER T. I. Nobel Prize Dialogue - evento Academia Brasileira de Ciências @ UERJ, RJ. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
111.	NAKAYA, HELDER T. I. IA e a Revolução Iminente na Pesquisa e Educação @ FCF-USP. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
112.	NAKAYA, HELDER T. I. Centro de Tecnologia em Vacinas (CT Vacinas) @ UFMG. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
113.	NAKAYA, HELDER T. I. Desafios para os Jovens Doutores na Consolidação de suas Carreiras. Conferência de Juventudes e Ciência @ Academia Brasileira de Ciências. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
114.	NAKAYA, HELDER T. I. Ferramentas de dados e IA para pesquisa em Big Data @ Hospital Israelita Albert Einstein. 2024. Apresentação de Trabalho/Seminário
115.	NAKAYA, HELDER T. I. Seminários em Biologia Parasitária @ IOC/Fiocruz-UFRN. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
116.	NAKAYA, HELDER T. I. AI-Bioscience Collaborative Summit @ National Academies of Science, Engineering, and Medicine, Washington, D.C. Palestrante e representante brasileiro convidado. 2024. Apresentação de Trabalho/Simpósio
117.	NAKAYA, HELDER T. I. Learning and Data Privacy. La circulation globale des données de santé @ Lyon, França. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
118.	NAKAYA, HELDER T. I. Impact of Generative AI on Medical Data. La circulation globale des données de santé @ Lyon, França. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
119.	NAKAYA, HELDER T. I. chatGPT na academia e pesquisa @ Institut Pasteur São Paulo, SP. 2024. Apresentação de Trabalho/Seminário
120.	NAKAYA, HELDER T. I. chatGPT na academia e pesquisa @ CT Vacinas, BH, MG. 2024. Apresentação de Trabalho/Seminário
121.	NAKAYA, HELDER T. I. V International Course on Theoretical and Applied Aspects of Systems Biology @ UFRJ, RJ. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
122.	NAKAYA, HELDER T. I. Jovens Pesquisadores e a Ciência no Brasil da ACIESP @ FAPESP. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
123.	NAKAYA, HELDER T. I. 3ª Semana de Ciencia de Dados @ Insper. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
124.	NAKAYA, HELDER T. I. 1st NEUROSCIENCE exploring the frontiers of neurological disorders @ BH, MG. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
125.	NAKAYA, HELDER T. I. Human Cell Atlas Latin America Symposium @ RJ. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
126.	NAKAYA, HELDER T. I. I ENCONTRO DE PESQUISA ASSISTENCIAL E II ENCONTRO DE PRÁTICA BASEADA E EVIDÊNCIAS (PBE) @ HOSPITAL SAMARITANO HIGIENOPOLIS. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
127.	NAKAYA, HELDER T. I. International Centre for Genetic Engineering and Biotechnology (ICGEB) @ South Africa. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
128.	NAKAYA, HELDER T. I. IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology @ Natal, RN. Keynote speaker. 2024. Apresentação de Trabalho/Simpósio
129.	NAKAYA, HELDER T. I. Palestra de abertura. II Brazilian Entomology Editors Meeting. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
130.	NAKAYA, HELDER T. I. São Paulo Innovation and Science Diplomacy School InnSciD SP. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
131.	NAKAYA, HELDER T. I. ISCB-Latin America SoIBio CCBCOL Conference @ Medellin, Columbia. Keynote speaker. 2024. Apresentação de Trabalho/Congresso
132.	NAKAYA, HELDER T. I. Knowledge Exchange - Artificial intelligence applied to biosciences in Latin America @ CABANA, EMBL-EBI, UK. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
133.	NAKAYA, HELDER T. I. Chilean Society for Biochemistry and Molecular Biology Conference @ La Serena, Chile. Keynote speaker. 2024. Apresentação de Trabalho/Congresso
134.	NAKAYA, HELDER T. I. 59º Congresso da Sociedade Brasileira de Medicina Tropical @ MEDTROP, SP. Palestrante convidado. 2024. Apresentação de Trabalho/Congresso
135.	NAKAYA, HELDER T. I. II Fiocruz-NIAID Symposium: Global Health Threats in a Changing Environment @ Belém, PA. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
136.	NAKAYA, HELDER T. I. Leiden University Center for Infectious Diseases @ Leiden University Medical Center, Holanda. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
137.	NAKAYA, HELDER T. I. IV Simpósio Araucária em Biologia Celular e Molecular @ Curitiba, PR. Keynote speaker. 2024. Apresentação de Trabalho/Simpósio
138.	NAKAYA, HELDER T. I. II Encontro de Novos Conhecimentos, Inovações e Melhorias em Enfermagem@ Hospital Israelita Albert Einstein. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
139.	NAKAYA, HELDER T. I. Inteligência Artificial Aplicada à Farmacologia @ SIG-Farmaco (Farmacologia e Terapêutica). Palestrante convidado. 2024. Apresentação de Trabalho/Conferência ou palestra
140.	NAKAYA, HELDER T. I. AI-Driven Network Medicine: Revolutionizing Global Health @ Pan-African PGS Education and Research, Egito. Palestrante convidado. 2024. Apresentação de Trabalho/Conferência ou palestra
141.	NAKAYA, HELDER T. I. Semana Franco-Uspiana de Cooperação Científica 2024 @ Institut Pasteur de São Paulo. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
142.	NAKAYA, HELDER T. I. Programa de Pós-graduação em Microbiologia e Imunologia @ UNIFESP. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
143.	NAKAYA, HELDER T. I. Simpósio dos Pós-Graduandos do Departamento de Bioquímica @ IQ-USP. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
144.	NAKAYA, HELDER T. I. Departamento de Genética e Biologia Evolutiva @ IB-USP. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
145.	NAKAYA, HELDER T. I. VIII Workshop de Pós-docs do Instituto de Biofísica Carlos Chagas Filho @ UFRJ, RJ. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
146.	NAKAYA, HELDER T. I. II Alumni ? O retorno de nossos egressos @ UNESP, Araraquara. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
147.	NAKAYA, HELDER T. I. XXIII Workshop do Programa Interunidades de Pós-Graduação em Bioinformática @ USP. ncRNAs: Biologia e Aplicações. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
148.	NAKAYA, HELDER T. I. 10ª reunião anual do RePORT-Internacional: Uma Década de Cooperação Internacional na Luta contra a Tuberculose @ Bahia. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
149.	NAKAYA, HELDER T. I. 1st Workshop in Mechanisms of Microbiota-Host Interaction @ São Sebastião, SP. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
150.	NAKAYA, HELDER T. I. 27° edição do Encontro Nacional de Biomedicina @ UNESP-Botucatu. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
151.	NAKAYA, HELDER T. I. Seminários internos do Institut Pasteur de São Paulo. Palestrante convidado. 2024. Apresentação de Trabalho/Seminário
152.	NAKAYA, HELDER T. I. XXII Meeting of Brazilian Society for Cell Biology @ São Paulo. Palestrante convidado. 2024. Apresentação de Trabalho/Congresso
153.	NAKAYA, HELDER T. I. XI Encontro do Instituto Adolfo Lutz 'Desafios do Laboratório de Saúde Pública: conhecer, monitorar e responder'. Palestrante convidado. 2024. Apresentação de Trabalho/Simpósio
154.	NAKAYA, HELDER TAKASHI IMOTO. Synamics meeting@Dinamarca. 2024. Apresentação de Trabalho/Seminário
155.	NASCIMENTO FILHO, EDSON G. ; VIEIRA, MÔNICA L. ; DIAS, MERIELLEN ; MENDES, MARIA A. ; SANCHEZ, FABIO B. ; Setubal, João C. ; HEINEMANN, MARCOS B. ; SOUZA, GISELE O. ; PIMENTA, DANIEL C. ; NASCIMENTO, ANA L.T.O.. Global proteome of the saprophytic strain Leptospira biflexa and comparative analysis with pathogenic strain Leptospira interrogans uncover new pathogenesis mechanisms. Journal of Proteomics. v. 297, p. 105125, 2024. Qualis: A1
156.	NASPOLINI, NATHALIA FERRAZZO ; VANZELE, PEDRO A. R. ; TÓTOLO, PEDRO ; SCHÜROFF, PAULO ALFONSO ; FATORI, DANIEL ; VICENTINI NETO, SANTOS ALVES ; BARATA-SILVA, CRISTIANE ; DOS SANTOS, LISIA MARIA GOBBO ; Fujita, André ; PASSOS-BUENO, MARIA RITA ; BELTRÃO-BRAGA, PATRICIA C. B. ; CAMPOS, ALLINE C. ; CARVALHO, ANDRÉ C. P. L. F. ; POLANCZYK, GUILHERME V. ; MOREIRA, JOSINO COSTA ; TADDEI, CARLA R.. Lead contamination in human milk affects infants? language trajectory: results from a prospective cohort study. FRONTIERS IN PUBLIC HEALTH. v. 12, p. 1-6, 2024. Qualis: A3
157.	Patané, José S. L. ; MARTINS, JOAQUIM ; SETUBAL, JOÃO CARLOS. A Guide to Phylogenomic Inference. Methods in Molecular Biology. 1ed. Em: . : Springer US. 2024.v. 2802, p. 267-345.
158.	PEREIRA VASCONCELOS, AMANDA ; SANTOS E SILVA, JUAN CARLO ; SIMIZO, ADRIANA ; PEÑA AVILA, JONATHAN ; NASSAR REICH GOLDSTEIN, GABRIEL ; PRADO DE OLIVEIRA, PEDRO HENRIQUE ; MOGOLLÓN GARCÍA, HENRY ; DE CARVALHO FRAGA, CARLOS ALBERTO ; NAKAYA, HELDER. Sex-Based Differences in Thyroid Plasma B Cell Infiltration: Implications for Autoimmune Disease Susceptibility. Endocrinology. v. 1, p. 1, 2024. Qualis: A2
159.	PEREIRA, JAQUELINE L. ; Andrade, Maiara Borges ; Cerqueira, Andressa ; ZUANETTI, DAIANE A ; SOLER, JÚLIA MARIA PAVAN. Mapeamento de Genes: Impacto da natureza da Resposta, da Estrutura da Amostra e do Modelo Genético. 2024. Apresentação de Trabalho/Congresso
160.	PEREIRA, JAQUELINE L. ; DE SOUZA, CAMILA A. ; NEYRA, JENNYFER E. M. ; LEITE, JEAN M. R. S. ; CERQUEIRA, ANDRESSA ; MINGRONI-NETTO, REGINA C. ; SOLER, JULIA M. P. ; ROGERO, MARCELO M. ; SARTI, FLAVIA M. ; FISBERG, REGINA M.. Genetic Ancestry and Self-Reported -Skin Color/Race- in the Urban Admixed Population of São Paulo City, Brazil. Genes. v. 15, p. 917, 2024. Qualis: A2
161.	PEREIRA, L. M. A. ; GIULIATTI, S.. Analysis of the Impact of LILRB2 Mutations on Interaction with SHP2 through Molecular Docking. Em: ISCB-LATAM SoIBio CCBCOL 2024, 2024, Medellin. ISCB-LATAM SoIBio CCBCOL 2024, 2024.
162.	PICINATO, BEATRIZ A. ; Santos, VHF ; ZARAMELA, LIVIA S. ; Vencio, R. Z. N. ; KOIDE, T.. Archaea express circular isoforms of IS200/IS605-associated ωRNAs. 2024. Apresentação de Trabalho/Congresso
163.	PORTOLESE, JOANA ; GOMES, CATARINA SANTOS ; DAGUANO GASTALDI, VINICIUS ; PAULA, CRISTIANE SILVESTRE ; CAETANO, SHEILA C. ; BORDINI, DANIELA ; BRUNONI, DÉCIO ; MARI, JAIR DE JESUS ; VÊNCIO, RICARDO Z. N. ; BRENTANI, HELENA. A Normative Model Representing Autistic Individuals Amidst Autism Spectrum Phenotypic Heterogeneity. BRAIN SCIENCES. v. 14, p. 1254, 2024. Qualis: Não identificado (BRAIN SCIENCES)
164.	PRADO, MARIANA B. ; COELHO, BÁRBARA P. ; IGLESIA, REBECA P. ; ALVES, RODRIGO N. ; BOCCACINO, JACQUELINE M. ; FERNANDES, CAMILA F. L. ; MELO-ESCOBAR, MARIA ISABEL ; AYYADHURY, SHAMINI ; CRUZ, MARIO C. ; SANTOS, TIAGO G. ; BERALDO, FLÁVIO H. ; FAN, JUE ; FERREIRA, FREDERICO M. ; Nakaya, Helder I. ; PRADO, MARCO A. M. ; PRADO, VANIA F. ; DUENNWALD, MARTIN L. ; LOPES, MARILENE H.. Prion protein regulates invasiveness in glioblastoma stem cells. BMC CANCER. v. 24, p. 1, 2024. Qualis: A2
165.	RAMOS, E. M. ; ARAUJO, E. L. L. ; DUARTE, V. H. S. ; CARVALHO, A. M. A. ; SILVA, V. O. ; BISPO, A. B. ; LACERDA, E. C. ; GUIMARÃES, A. M. S.. Incidência de Tuberculose em casos novos de pacientes com COVID-19 por gênero na pandemia: Uma análise em Campo Grande/MS (2020 ? 2021) utilizando Machine Learning. Em: 59 Congresso Brasileiro de Medicina Tropical (MedTrop), 2024, São Paulo. Resumos do MedTrop2024, 2024.
166.	RAMOS, E. M. ; ARAUJO, E. L. L. ; SILVA, V. O. ; BISPO, A. B. ; GUIMARÃES, A. M. S.. Desenvolvimento de uma Ferramenta Baseada em Inteligência Artificial para Apoio na Análise Cienciométrica e Revisões Sistemáticas de Literatura na Tuberculose. Em: 59 Congresso Brasileiro de Medicina Tropical (MedTrop), 2024, São Paulo. Resumos do MedTrop2024, 2024.
167.	REIS, EM. Unraveling long noncoding RNAs with oncogenic roles in pancreatic cancer. 2024. Apresentação de Trabalho/Congresso
168.	REIS, EM. Annotation and functional characterization of oncogenic long noncoding RNAs deregulated in pancreatic cancer. 2024. Apresentação de Trabalho/Congresso
169.	RIBEIRO, D. L. ; LATANCIA, MARCELA T. ; de Souza, I ; ARIWOOLA, A. A. ; MENDES, DAVI ; ROCHA, CLARISSA R.R. ; LENGERT, A. V. H. ; MENCK, CARLOS FM. Temozolomide resistance mechanisms: unveiling the role of translesion DNA polymerase kappa in glioblastoma spheroids in vitro. BIOSCIENCE REPORTS. v. 44, p. BSR20230667, 2024. Qualis: A3
170.	RIBEIRO, DILSON FAGUNDES ; DE MATOS, JÉSSICA PEREIRA ; ROCHA, LORRANA CACHUITE MENDES ; DA SILVA, ANA KARLA ; DE PAULA, CAMILA HENRIQUES ; CORDEIRO, ISABELLA FERREIRA ; DE CARVALHO LEMES, CAMILA GRACYELLE ; SANCHEZ, ANGÉLICA BIANCHINI ; GARCIA, CAMILA CARRIÃO MACHADO ; SETUBAL, JOÃO CARLOS ; de SOUZA, Robson Francisco ; DE MELLO VARANI, ALESSANDRO ; ALMEIDA, NALVO FRANCO ; MOREIRA, LEANDRO MARCIO. From cactus to crop: genomic insights of a beneficial and non-pathogenic Curtobacterium flaccumfaciens strain and the evolution of its pathosystem. MOLECULAR GENETICS AND GENOMICS. v. 299, p. 105, 2024. Qualis: A4
171.	ROSSI, FERNANDO PACHECO NOBRE ; Flores, Vinicius Sousa ; UCEDA-CAMPOS, GUILLERMO ; Amgarten, Deyvid Emanuel ; SETUBAL, JOÃO CARLOS ; Da Silva, Aline Maria. Comparative Analyses of Bacteriophage Genomes. Em: Setubal, J.C.; Stadler, P.F. ; Stoye, J.. (Org.). Methods in Molecular Biology. 1ed.New York. : Springer US. 2024.v. 2802, p. 427-453.
172.	ROSSI, FERNANDO PACHECO NOBRE ; Flores, Vinicius Sousa ; UCEDA-CAMPOS, GUILLERMO ; Amgarten, Deyvid Emanuel ; SETUBAL, JOÃO CARLOS ; DA SILVA, ALINE MARIA. Comparative Analyses of Bacteriophage Genomes. Methods in Molecular Biology. 1ed. Em: . : Springer US. 2024.v. 2802, p. 427-453.
173.	SANCHEZ, FABIO BELTRAME ; Sato Guima, Suzana Eiko ; SETUBAL, JOÃO CARLOS. How to Obtain and Compare Metagenome-Assembled Genomes. Methods in Molecular Biology. 1ed. Em: . : Springer US. 2024.v. 2802, p. 135-163.
174.	SCARAMBONI, CAROLINE ; FARIAS, CAMILA NOVAIS ; DE CASTRO VASCONCELLOS, PÉROLA ; LEVI, MICHAEL ; SADIKTSIS, IOANNIS ; POZZA, SIMONE ANDRÉA ; DE ARAGÃO UMBUZEIRO, GISELA ; WATANABE, TETSUSHI ; DE OLIVEIRA RODRIGUES, POLIANY CRISTINY ; GRANDIS, Adriana ; PAGLIUSO, DÉBORA ; BUCKERIDGE, MARCOS SILVEIRA ; CAMPOS, MARIA LUCIA ARRUDA MOURA ; KIPPLER, MARIA ; DREIJ, KRISTIAN ; DE OLIVEIRA GALVÃO, MARCOS FELIPE. Characterization of cross-continental PM2.5: Insights into emissions and chemical composition. ATMOSPHERIC RESEARCH. v. 305, p. 107423, 2024. Qualis: A1
175.	SCORSOLINI FARES, ARTHUR ; DE ALMEIDA VASQUEZ, FELIPE JAMES ; ALVES, LEVY B. ; GIULIATTI, S.. Applications of Explainable Artificial Intelligence in Molecular Modeling and Docking. Em: ISCB-LATAM SoIBio CCBCOL 2024, 2024, Medellin. ISCB-LATAM SoIBio CCBCOL 2024, 2024.
176.	Setubal, Joao Carlos; Stadler, Peter F. (Org.) ; Stoye, Jens (Org.). Comparative Genomics. 1 ed. New York: Humana Press, 2024. p. 600.
177.	SILVA, DENNIS J. ; Miranda, Paulo André Vechiatto ; ALVES, WONDER A. L. ; HASHIMOTO, RONALDO F. ; Kosinka, Ji¿í ; Roerdink, Jos B. T. M.. Differential Maximum Euclidean Distance Transform Computation in Component Trees. Lecture Notes in Computer Science. 1ed. Em: . : Springer Nature Switzerland. 2024.v. 14605, p. 67-79.
178.	SILVA, J. F. L. ; CANTARELLA, H. ; NOGUEIRA, L. A. H. ; ROSSETTO, R. ; MACIEL FILHO, R. ; SOUZA, GLAUCIA MENDES. Biofuels in Emerging Markets of Africa and Asia. IEA Bioenergy. 2024. Relatório Internacional
179.	SILVA, J. V. C. ; CASTILLO-ORDOÑEZ, WILLIAN O. ; GIULIATTI, S.. Potencial terapêutico de compostos aromáticos da Lippia alba contra a doença de Alzheimer. Em: 32º Simpósio Internacional de Iniciação Científica e Tecnológica da USP - SIICUSP, 2024, Ribeirão Preto, SP. Resumos, v. 32, p. 1-2, 2024.
180.	SILVA, JOÃO PAULO L. ; DONAIRES, FLÁVIA S. ; GUTIERREZ-RODRIGUES, FERNANDA ; MARTINS, DAVI J. ; CARVALHO, VINICIUS S. ; SANTANA, BARBARA A. ; CUNHA, RENATO L. G. ; KAJIGAYA, SACHIKO ; MENCK, CARLOS F. M. ; YOUNG, NEAL S. ; KJELDSEN, EIGIL ; CALADO, RODRIGO T.. RecQ helicase expression in patients with telomeropathies. MOLECULAR BIOLOGY REPORTS. v. 51, p. 754, 2024. Qualis: B1
181.	SILVA-PEREIRA, T. T. ; ARAUJO, M. V. ; SOUZA, A. F. ; SOUZA, A. ; BRANDAO, P. ; SA, L. R. M. ; FONSECA, D. M. ; HEINEMANN, MARCOS BRYAN ; GUIMARÃES, A. M. S.. The impact of vaccination immunity on viral quasispecies in Golden Syrian hamsters experimentally infected with SARS-CoV-2. Em: X Meeting, 2024, Natal, RN. Resumos - X Meeting, 2024.
182.	SILVA-PEREIRA, TAIANA TAINÁ ; CAMARGO, N. C. S. ; GUIMARÃES, A. M. S.. Diversification of gene content in the Mycobacterium tuberculosis complex is determined by phylogenetic and ecological signatures. MICROBIOLOGY SPECTRUM. v. 1, p. 1, 2024. Qualis: A2
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184.	SOUZA, ALEX JUNIOR SOUZA DE ; SOUZA FILHO, ANTÔNIO FRANCISCO DE ; ZIMPEL, CRISTINA KRAEMER ; AYUPE, MARINA CAÇADOR ; ARAÚJO, MARCELO VALDEMIR DE ; MACHADO, RAFAEL RAHAL GUARAGNA ; SALLES, ERIKA ; SALGADO, CAIO LOUREIRO ; TAVARES, MARIANA SILVA ; SILVA-PEREIRA, TAIANA TAINÁ ; SOUZA, PAULA CAROLINA DE ; DURIGON, EDISON LUIZ ; HEINEMANN, MARCOS BRYAN ; BRANDÃO, PAULO EDUARDO ; FONSECA, DENISE MORAIS DA ; GUIMARÃES, ANA MARCIA DE SÁ ; SÁ, LILIAN ROSE MARQUES DE. Hepatic endotheliitis in Golden Syrian hamsters (Mesocricetus auratus) experimentally infected with SARS-CoV-2. REVISTA DO INSTITUTO DE MEDICINA TROPICAL DE SÃO PAULO. v. 66, p. 1, 2024. Qualis: B1
185.	SOUZA, DIEGO TRINDADE DE ; Vibranovski, Maria Dulcetti ; MATIOLI, SERGIO RUSSO. Como nascem os genes?. Genética na Escola (on line). v. 19, p. 89-101, 2024. Qualis: B3
186.	SOUZA, G.M. IEA BIOENERGY T39 BIOFUEL NEWS. IEA Bioenergy TCP Task 39. 2024. Relatório Internacional
187.	SOUZA, GLAUCIA. Biofuels in Emerging Markets ? Key Findings. IEA Bioenergy TCP ? Task 39. 2024. Relatório Internacional
188.	SOUZA, GLAUCIA MENDES. Biofuels production and development in New Zealand. IEA Bioenergy TCP Task 39. 2024. Relatório Internacional
189.	SOUZA, GM. Evaluation of the Brazilian RenovaBio conversion-free criteria on land use change emissions. IEA Bioenergy. 2024. Relatório Internacional
190.	SÁ, RAFAELA OLIVEIRA DA SILVA ; MICHELASSI, GABRIEL DE CASTRO ; BUTRICO, DIEGO DOS SANTOS ; FRANCO, FELIPE DE OLIVEIRA ; SUMIYA, FERNANDO MITSUO ; PORTOLESE, JOANA ; BRENTANI, HELENA ; NUNES, FÁTIMA L.S. ; MACHADO-LIMA, ARIANE. Enhancing ensemble classifiers utilizing gaze tracking data for autism spectrum disorder diagnosis. COMPUTERS IN BIOLOGY AND MEDICINE. v. 182, p. 109184, 2024. Qualis: A2
191.	TIETZE, ETHAN ; BARBOSA, ANDRE ROCHA ; ARAUJO, BRUNO ; EUCLYDES, VERONICA ; SPIEGELBERG, BAILEY ; CHO, HYEON JIN ; LEE, YONG KYU ; WANG, YANHONG ; MCCORD, ALEJANDRA ; LORENZETTI, ALAN ; FELTRIN, ARTHUR ; VAN DE LEEMPUT, JOYCE ; DI CARLO, PASQUALE ; URSINI, GIANLUCA ; BENJAMIN, KYNON J. ; BRENTANI, HELENA ; KLEINMAN, JOEL E. ; HYDE, THOMAS M. ; WEINBERGER, DANIEL R. ; MCKAY, RONALD ; et.al. Human archetypal pluripotent stem cells differentiate into trophoblast stem cells via endogenous BMP5/7 induction without transitioning through naive state. Scientific Reports. v. 14, p. 3291, 2024. Qualis: A2
192.	TORRES'OBREQUE, KARIN ; GONÇALVES, FELIPE GOBBI ; FERRARO, RAFAEL BERTELLI ; FUENTES'LEÓN, FABIANA ; Menck, Carlos Frederico Martins ; COSTA'SILVA, TALES ALEXANDRE ; MONTEIRO, GISELE ; PEREGO, PATRIZIA ; RANGEL'YAGUI, CARLOTA DE OLIVEIRA. Recombinant production of a highly efficient photolyase fromThermus thermophilus. Biotechnology Journal. v. 19, p. e2300325, 2024. Qualis: A2
193.	URBAN, BRITTA C. ; GONÇALVES, ANDRÉ N.A. ; LOUKOV, DESSI ; PASSOS, FERNANDO M. ; REINÉ, JESÚS ; GONZALEZ-DIAS, PATRÍCIA ; SOLÓRZANO, CARLA ; MITSI, ELENA ; NIKOLAOU, ELISSAVET ; O?CONNOR, DANIEL ; COLLINS, ANDREA M. ; ADLER, HUGH ; POLLARD, ANDREW ; RYLANCE, JAMIE ; GORDON, STEPHEN B. ; JOCHEMS, SIMON P. ; Nakaya, Helder I. ; FERREIRA, DANIELA M.. Inflammation of the nasal mucosa is associated with susceptibility to experimental pneumococcal challenge in older adults. Mucosal Immunology. v. 1, p. 1, 2024. Qualis: A1
194.	URBANSKI, ALYSSON HENRIQUE ; MASO, VANESSA E. ; MARTINS, FELIPE M. ; DA COSTA-MARTINS, ANDRÉ GUILHERME ; DO NASCIMENTO OLIVEIRA, ANA PAULA B. ; Nakaya, Helder I.. Chikungunya-Driven Gene Expression Linked to Osteoclast Survival and Chronic Arthralgia. INFECTIOUS DISEASE REPORTS. v. 16, p. 914-922, 2024. Qualis: Não identificado (INFECTIOUS DISEASE REPORTS)
195.	VASQUEZ, F. J. A. ; FARES, A. S. ; Giuliatti, S. Machine Learning-Enhanced Molecular Dynamics Analysis of Residue Variant Effects on Human ACE2 and Furin Protein Interactions with SARS-CoV-2 Spike. IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology (CIBCB). v. 1, p. 1-8, 2024.Qualis: Não identificado (IEEE CONFERENCE ON COMPUTATIONAL INTELLIGENCE IN BIOINFORMATICS AND COMPUTATIONAL BIOLOGY)
196.	VIBRANOVSKI, M. D. Development of Oligopaint probes for chromosomes with high frequency of repetitive sequences. 2024. Apresentação de Trabalho/Conferência ou palestra
197.	VIBRANOVSKI, M. D. Inativação meiótica do cromossomo X. 2024. Apresentação de Trabalho/Conferência ou palestra
198.	VINCES, TANIA CHURASACARI ; DE SOUZA, ANACLETO SILVA ; CARVALHO, CECÍLIA F. ; VISNARDI, ALINE BIAZOLA ; TEIXEIRA, RAPHAEL D. ; LLONTOP, EDGAR E. ; BISMARA, BEATRIZ APARECIDA PASSOS ; VICENTE, ELISABETE J. ; PEREIRA, JOSÉ O. ; de SOUZA, Robson Francisco ; YONAMINE, MAURICIO ; MARANA, SANDRO ROBERTO ; FARAH, CHUCK SHAKER ; GUZZO, CRISTIANE R.. Monomeric Esterase: Insights into Cooperative Behavior, Hysteresis/Allokairy. BIOCHEMISTRY. v. 63, p. 1178-1193, 2024. Qualis: A3
199.	WOELLNER-SANTOS, DAISY ; TAHIRA, ANA C. ; MALVEZZI, JOÃO V. M. ; MESEL, VINICIUS ; MORALES-VICENTE, DAVID A. ; TRENTINI, MONALISA M. ; MARQUES-NETO, LÁZARO M. ; MATOS, ISAAC A. ; KANNO, ALEX I. ; PEREIRA, ADRIANA S. A. ; TEIXEIRA, ANDRÉ A. R. ; GIORDANO, RICARDO J. ; LEITE, LUCIANA C. C. ; PEREIRA, CARLOS A. B. ; DEMARCO, Ricardo ; AMARAL, MURILO S. ; Verjovski-Almeida, Sergio. Schistosoma mansoni vaccine candidates identified by unbiased phage display screening in self-cured rhesus macaques. npj Vaccines. v. 9, p. 5, 2024. Qualis: Não identificado (NPJ VACCINES)
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2023

1.	ALNOCH, ROBSON C. ; SALGADO, JOSE C. S. ; ALVES, GABRIELA S. ; DE ANDRADES, DIANDRA ; MELEIRO, LUANA P. ; SEGATO, FERNANDO ; BERTO, GABRIELA LEILA ; WARD, RICHARD J. ; Buckeridge, Marcos S. ; Polizeli, Maria de Lourdes T. M.. Biochemical Characterization of an Endoglucanase GH7 from Thermophile Thermothielavioides terrestris Expressed on Aspergillus nidulans. Catalysts. v. 13, p. 582, 2023. Qualis: A2
2.	ALVES, EDUARDO ; NAKAYA, HELDER ; GUIMARÃES, EUZÉBIO ; GARCIA, CÉLIA R.S.. Combining IP3 affinity chromatography and bioinformatics reveals a novel protein-IP3 binding site on Plasmodium falciparum MDR1 transporter. Current Research in Microbial Sciences. v. 4, p. 100179, 2023. Qualis: Não identificado (CURRENT RESEARCH IN MICROBIAL SCIENCES)
3.	ALVES, L. B. ; GIULIATTI, S.. Modeling of the pHLA-DRA*01:01/DRB1*15:01 complex embedded in the plasma membrane. Em: X- Meeting / BSB 2023, 2023, Curitibs. X Meeting / BSB 2023, 2023.
4.	ALVES, LEVY B. ; GIULIATTI, S.. Modeling the pHLA/TCR Complex in a Lipid Bilayer Environment. Em: XXII Workshop do Programa Interunidades de Pós-Graduação em Bioinformática - USP | 2023,, 2023, São Paulo. XXII Workshop do Programa Interunidades de Pós-Graduação em Bioinformática - USP | 2023, 2023.
5.	ANTONELLO, P. C. ; LEITE JR, J. N. ; CIRINO, H. ; TURRINI, P. ; ZERILLO, MARCELO M. ; ISHIDA, JULIANE K. ; RODY, HUGO V. S. ; VITORELLO, C. B. M. ; SEVERO, R. ; CAMARGO, L. E. A. ; BINI, ANDRESSA P. ; CRESTE, SILVANA ; Van Sluys, M. A.. Gene co-expression networks based on tolerant and susceptible transcriptome enable a broad view of plant responses to differing pathogens. 2023. Apresentação de Trabalho/Outra
6.	AVILA, A. L. R. ; GIULIATTI, S.. Analysis of the Dynamic Behavior at the Interface between Host Polymorphisms and SARS-CoV2 Variants. Em: X-Meeting / BSB 2023, 2023, Curitiba. X-Meeting / BSB 2023, 2023.
7.	BARRETO, ESTER A. ; CRUZ, AMANDA S. ; VERAS, FLAVIO P. ; MARTINS, RONALDO ; BERNARDELLI, RAFAELLA S. ; PAIVA, ISADORA M. ; LIMA, THAIS M. ; SINGH, YOUVIKA ; GUIMARÃES, RAPHAEL C. ; DAMASCENO, SAMARA ; PEREIRA, NAYARA ; ALVES, JOÃO MANOEL ; GONÇALVES, TIAGO T. ; FORATO, JULIA ; MURARO, STÉFANIE P. ; SOUZA, GABRIELA F. ; BATAH, SABRINA SETEMBRE ; PROENCA-MODENA, JOSÉ L. ; MORI, MARCELO A. ; NAKAYA, H. I. ; et.al. COVID-19-related hyperglycemia is associated with infection of hepatocytes and stimulation of gluconeogenesis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 120, p. 1-1, 2023. Qualis: A1
8.	BARRETO, MATHEUS QUINTANA ; GARBELOTTI, CAROLINA VICTAL ; DE MOURA SOARES, JÉSSICA ; GRANDIS, Adriana ; BUCKERIDGE, MARCOS SILVEIRA ; LEONE, FRANCISCO ASSIS ; WARD, RICHARD JOHN. Xylose isomerase from Piromyces sp. E2 is a promiscuous enzyme with epimerase activity. ENZYME AND MICROBIAL TECHNOLOGY. v. 166, p. 110230, 2023. Qualis: A2
9.	barroso da silva, f l. Palestra convidada: 'Bioinformática Estrutural aplicada ao desenvolvimento otimizado de anticorpos e identificação de alvos vacinais'. 2023. Apresentação de Trabalho/Simpósio
10.	Barroso da Silva, Fernando L. Constant-pH Simulation Methods for Biomolecular Systems. Constant-pH Simulation Methods for Biomolecular Systems. 1ed. Em: . : Elsevier. 2023.p. 1.
11.	Barroso da Silva, Fernando L. Palestra convidada: '*Developing and Applying Fast constant-pH Simulation Methods in Biological Systems: From biomaterials to virus*. 2023. Apresentação de Trabalho/Conferência ou palestra
12.	Barroso da Silva, Fernando L. Palestra convidada: 'Unlocking the molecular aspects of Zika and SARS-CoV-2: An exploration through computer simulations'. 2023. Apresentação de Trabalho/Conferência ou palestra
13.	Barroso da Silva, Fernando L. Palestra convidada: 'Unlocking the molecular aspects of Zika and SARS-CoV-2: An exploration through computer simulations'. 2023. Apresentação de Trabalho/Conferência ou palestra
14.	Barroso da Silva, Fernando L. Palestra convidada: Developing and applying bioinformatic methods with a biophysical approach: from food, biomaterials to virus and antibody design. 2023. Apresentação de Trabalho/Conferência ou palestra
15.	Barroso da Silva, Fernando L. Palestra convidada: 'Advances in Protein Electrostatics and Computational Modeling of Viruses and Antibody Development'. 2023. Apresentação de Trabalho/Simpósio
16.	Barroso da Silva, Fernando Luís. Palestra convidada: From Protein Electrostatics to the Computational Modeling of Viruses and Antibody Design. 2023. Apresentação de Trabalho/Conferência ou palestra
17.	BASSO, MARCOS FERNANDO ; LOURENÇO-TESSUTTI, ISABELA TRISTAN ; MOREIRA-PINTO, CLIDIA EDUARDA ; MENDES, RENEIDA APARECIDA GODINHO ; PEREIRA, DEBORA GONÇALVES ; GRANDIS, Adriana ; MACEDO, LEONARDO LIMA PEPINO ; MACEDO, AMANDA FERREIRA ; GOMES, ANA CRISTINA MENESES MENDES ; ARRAES, FABRÍCIO BARBOSA MONTEIRO ; TOGAWA, ROBERTO COITI ; DO CARMO COSTA, MARCOS MOTA ; MARCELINO-GUIMARAES, FRANCISMAR CORRÊA ; SILVA, MARIA CRISTINA MATTAR ; FLOH, ENY IOCHEVET SEGAL ; BUCKERIDGE, MARCOS SILVEIRA ; DE ALMEIDA ENGLER, JANICE ; GROSSI-DE-SA, MARIA FATIMA. Overexpression of the GmEXPA1 gene reduces plant susceptibility to Meloidogyne incognita. PLANT CELL REPORTS. v. 42, p. 137-152, 2023. Qualis: A1
18.	BIAZZI, R. B. ; FUJITA, A. ; TAKAHASHI, D. Y.. Convergent evolution in silico reveals shape and dynamic principles of directed locomotion. eLife. v. 12, p. 1-33, 2023.Qualis: A1
19.	BINI, ANDRESSA PERES ; ROSSI, GUILHERME DUARTE ; POESCHL, YVONNE ; SERRA, MARINA CARNAZ DUARTE ; CAMARGO, Luis Eduardo Aranha ; Monteiro-Vitorello, Claudia Barros ; Van Sluys, Marie-Anne ; VAN DAM, NICOLE M. ; UTHE, HENRIETTE ; CRESTE, SILVANA. Molecular, biochemical and metabolomics analyses reveal constitutive and pathogen-induced defense responses of two sugarcane contrasting genotypes against leaf scald disease. PLANT PHYSIOLOGY AND BIOCHEMISTRY. v. 203, p. 108033, 2023. Qualis: A1
20.	BINI, ANDRESSA PERES ; SERRA, MARINA CARNAZ DUARTE ; PASTORE, IZADORA FARINA ; BRONDI, CAROLINA VELUCI ; CAMARGO, Luis Eduardo Aranha ; Monteiro-Vitorello, Claudia Barros ; Van Sluys, Marie-Anne ; ROSSI, GUILHERME DUARTE ; CRESTE, SILVANA. Transmission of Xanthomonas albilineans by the spittlebug, Mahanarva fimbriolata (Hemiptera: Cercopidae), in Brazil: first report of an insect vector for the causal agent of sugarcane leaf scald. JOURNAL OF INSECT SCIENCE. v. 23, p. 116, 2023. Qualis: C
21.	BOETTGER, BRUNO C. ; PIROUPO, CARLOS M. ; Setubal, João C. ; GIRARDELLO, RAQUEL ; PIGNATARI, ANTÔNIO C. C.. Co-carriage of Plasmid NDM and Chromosomal KPC in Klebsiella pneumoniae ST255 Human Wound Isolate in Brazil. CURRENT MICROBIOLOGY. v. 80, p. 394, 2023. Qualis: B1
22.	BORGES, JÉSSICA BASSANI ; OLIVEIRA, VICTOR FERNANDES ; DAGLI-HERNANDEZ, CAROLINA ; FERREIRA, GLAUCIO MONTEIRO ; BARBOSA, THAIS KRISTINI ALMENDROS AFONSO ; DA SILVA RODRIGUES MARÇAL, ELISANGELA ; LOS, BRUNA ; MALAQUIAS, VANESSA BARBOSA ; BORTOLIN, RAUL HERNANDES ; FREITAS, RENATA CAROLINE COSTA ; MORI, AUGUSTO AKIRA ; BASTOS, GISELE MEDEIROS ; GONÇALVES, RODRIGO MARQUES ; ARAÚJO, DANIEL BRANCO ; ZATZ, HENRY ; BERTOLAMI, ADRIANA ; FALUDI, ANDRÉ ARPAD ; BERTOLAMI, MARCELO CHIARA ; DE MORAES REGO SOUZA, AMANDA GUERRA ; NAKAYA, H. I. ; et.al. Identification of pathogenic variants in the Brazilian cohort with Familial hypercholesterolemia using exon-targeted gene sequencing. GENE. v. 875, p. 147501-1, 2023. Qualis: A4
23.	BRITO, ANITA ; FRANCO, FELIPE ; BRENTANI, HELENA ; BELTRÃO-BRAGA, PATRÍCIA CRISTINA BALEEIRO. Assessment of vulnerability dimensions considering Family History and environmental interplay in Autism Spectrum Disorder. BMC Psychiatry. v. 23, p. 254, 2023. Qualis: A3
24.	BRUNO, H. A. ; ALMEIDA, I. ; PINHEIRO, MARA M. L. S. ; VIBRANOVSKI, M. D.. Single and repetitive oligopaints probes label specifically neo-Y chromosome of Drosophila miranda. 2023. Apresentação de Trabalho/Conferência ou palestra
25.	Buckerdge, M.S. Inteligência, uma propriedade biológica ? Cognição no mundo microscópico. Jornal da USP, 10 jul. 2023.
26.	BUCKERIDGE, M.S. Chapter 3 - The diversity of plant carbohydrate hydrolysis in nature and technology. Em: GOLDBECK, R.; POLETTO, P.. (Org.). Polysaccharide-Degrading Biocatalysts. 1ed. : Academic Press. 2023.v. 1, p. 55-74.
27.	BUCKERIDGE, M.S. Inteligência, uma propriedade biológica ? A inteligência coletiva. Jornal da USP, 24 jul. 2023.
28.	BUCKERIDGE, M.S. Inteligência, uma propriedade biológica ? Cognição no mundo vegetal. Jornal da USP, 18 jul. 2023.
29.	BUCKERIDGE, M.S. O etanol brasileiro precisa de uma rota tecnológica. Jornal da USP, São Paulo, 29 maio 2023.
30.	BUCKERIDGE, M.S. Carro elétrico, uma boa opção. Porém?. Jornal da USP, São Paulo, p. 1, 05 abr. 2023.
31.	BUCKERIDGE, M.S. Cidades, crise climática e o pacto federativo brasileiro. Jornal da USP, São Paulo, p. 1, 14 mar. 2023.
32.	BUCKERIDGE, M.S. O retorno dos polímatas. Jornal da USP, p. 1, 24 jan. 2023.
33.	BUCKERIDGE, MS. COP 28: a barreira da distância entre a ciência e os outros domínios do conhecimento. Jornal da USP, São Paulo, p. online, 12 dez. 2023.
34.	BUZZO, B. B. ; Giuliatti, Silvana ; PEREIRA, P. A. M. ; GOMES-PEPE, E. S. ; LEMOS, E. G. M.. Molecular Docking of Lac_CB10: Highlighting the Great Potential for Bioremediation of Recalcitrant Chemical Compounds by One Predicted Bacteroidetes CopA-Laccase. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 24, p. 9785, 2023. Qualis: A2
35.	CANABARRO, N.I. ; SILVA-ORTIZ, P. ; NOGUEIRA, L.A.H. ; CANTARELLA, H. ; MACIEL-FILHO, R. ; SOUZA, G.M.. Sustainability assessment of ethanol and biodiesel production in Argentina, Brazil, Colombia, and Guatemala. RENEWABLE & SUSTAINABLE ENERGY REVIEWS. v. 171, p. 113019, 2023. Qualis: A1
36.	CANTARELLA, H. ; SOUZA, GLAUCIA ; NOGUEIRA, L. H. ; MACIEL FILHO, R. ; PAIVA, G. C. ; CANABARRO, N. I. ; ORTIZ, P. S. ; EKBOM, T. ; SILVA, J. F. L.. Assessment of successes and lessons learned for biofuels deployment. IEA Bioenergy. 2023. Relatório Internacional
37.	CANTARELLA, HEITOR ; LEAL SILVA, JEAN FELIPE ; Nogueira, Luiz Augusto Horta ; MACIEL FILHO, RUBENS ; ROSSETTO, RAFFAELLA ; EKBOM, TOMAS ; SOUZA, GLAUCIA MENDES ; MUELLER'LANGER, FRANZISKA. Biofuel technologies: Lessons learned and pathways to decarbonization. Global Change Biology Bioenergy. v. 2023, p. 1-14, 2023. Qualis: A1 (GLOBAL CHANGE BIOLOGY. BIOENERGY)
38.	CARRAU, ANALÍA ; TANO, JOSEFINA ; MOYANO, LAURA ; RIPA, MARÍA BELÉN ; PETROCELLI, SILVANA ; PISKULIC, LAURA ; MOREIRA, LEANDRO MARCIO ; PATANÉ, JOSÉ SALVATORE LEISTER ; SETUBAL, JOÃO CARLOS ; ORELLANO, ELENA GRACIELA. A novel BLUF photoreceptor modulates the Xanthomonas citri subsp. citri-host plant interaction. PHOTOCHEMICAL SCIENCES (ONLINE). v. 1, p. 1, 2023. Qualis: A3
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90.	HUTTNER, ANGELA ; ENGLER, OLIVIER ; HOOPER, JAY W. ; KWILAS, STEVE ; RICKS, KEERSTEN ; CLEMENTS, TAMARA L. ; JONSDOTTIR, HULDA R. ; NAKKA, SRAVYA SOWDAMINI ; ROTHENBERGER, SYLVIA ; KREMSNER, PETER ; ZÜST, ROLAND ; MEDAGLINI, DONATA ; OTTENHOFF, TOM ; HARANDI, ALI M. ; SIEGRIST, CLAIRE-ANNE ; AGNANDJI, SELIDJI TODAGBE ; KRISHNA, SANJEEV ; KREMSNER, PETER G. ; NAKAYA, H. I. ; et.al. Antibody responses to recombinant vesicular stomatitis virus-Zaire Ebolavirus vaccination for Ebola virus disease across doses and continents: 5-year durability. CLINICAL MICROBIOLOGY AND INFECTION. v. 29, p. 1587-1594, 2023. Qualis: A1
91.	IM, SE JIN ; OBENG, REBECCA C. ; NASTI, TAHSEEN H. ; MCMANUS, DANIEL ; KAMPHORST, ALICE O. ; GUNISETTY, SIVARAM ; PROKHNEVSKA, NATALIYA ; CARLISLE, JENNIFER W. ; YU, KE ; SICA, GABRIEL L. ; CARDOZO, LUCAS E. ; GONÇALVES, ANDRÉ N. A. ; KISSICK, HAYDN T. ; Nakaya, Helder I. ; RAMALINGAM, SURESH S. ; Ahmed, Rafi. Characteristics and anatomic location of PD-1 TCF1 stem-like CD8 T cells in chronic viral infection and cancer. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 120, p. 1-1, 2023. Qualis: A1
92.	INAGUE, ALEX ; ALECRIM, LILIAN COSTA ; MONTEIRO, JHONATAS SIRINO ; YOSHINAGA, MARCOS YUKIO ; SETUBAL, JOÃO CARLOS ; MIYAMOTO, SAYURI ; GIORDANO, RICARDO JOSÉ. Oxygen-induced pathological angiogenesis promotes intense lipid synthesis and remodeling in the retina. Iscience. v. 26, p. 106777, 2023. Qualis: Não identificado (ISCIENCE)
93.	João C. Setubal. MetaSUB explorations: phages and bacteria. 2023. Apresentação de Trabalho/Conferência ou palestra
94.	LAUX, MARCELE ; PIROUPO, CARLOS MORAIS ; SETUBAL, JOÃO CARLOS ; GIANI, ALESSANDRA. The Raphidiopsis (= Cylindrospermopsis) raciborskii pangenome updated: Two new metagenome-assembled genomes from the South American clade. HARMFUL ALGAE. v. 129, p. 102518, 2023. Qualis: A1
95.	LEITE, JEAN MICHEL R.S. ; PEREIRA, JAQUELINE L. ; DAMASCENO, NÁGILA R.T. ; SOLER, JÚLIA M. PAVAN ; FISBERG, REGINA M. ; ROGERO, MARCELO M. ; SARTI, FLAVIA M.. Association of dyslipidemia with single nucleotide polymorphisms of the cholesteryl ester transfer protein gene and cardiovascular disease risk factors in a highly admixed population. CLINICAL NUTRITION ESPEN. v. 58, p. 242-252, 2023. Qualis: B2
96.	LEVIN, ANNA S. ; COSTA, SILVIA F. ; RAZZOLINI, MARIA TEREZA P. ; PADOVEZE, MARIA CLARA ; NUNES, FATIMA L.S. ; OLIVEIRA, MAURA S. ; FREIRE, MARISTELA P. ; TAVARES, BRUNO M. ; ASSIS, DENISE B. ; DE OLIVEIRA, VITOR F. ; LEAL, FABIO E. ; MARCONDES, MARTA A. ; DROPA, MILENA ; CONDE, MÔNICA T.R.P. ; OIKAWA, MARCIO K. ; Ferreira, João E. ; SABINO, ESTER ; MANULI, ERIKA R. ; RAYMUNDO, SUELI F.. Launch of the São Paulo Wellcome Trust-funded multidisciplinary research program on optimising antimicrobial use in highly populated urban environments. Lancet Regional Health-Americas. v. 25, p. 100574, 2023. Qualis: Não identificado (LANCET REGIONAL HEALTH-AMERICAS)
97.	LI, QING ; CHEN, JIEYI ; FAUX, PIERRE ; DELGADO, MIGUEL EDUARDO ; BONFANTE, BETTY ; FUENTES-GUAJARDO, MACARENA ; MENDOZA-REVILLA, JAVIER ; CHACÓN-DUQUE, J. CAMILO ; HURTADO, MALENA ; VILLEGAS, VALERIA ; GRANJA, VANESSA ; JARAMILLO, CLAUDIA ; ARIAS, WILLIAM ; BARQUERA, RODRIGO ; EVERARDO-MARTÍNEZ, PAOLA ; SÁNCHEZ-QUINTO, MIRSHA ; GÓMEZ-VALDÉS, JORGE ; VILLAMIL-RAMÍREZ, HUGO ; SILVA DE CERQUEIRA, CAIO C. ; Hünemeier, Tábita ; et.al. Automatic landmarking identifies new loci associated with face morphology and implicates Neanderthal introgression in human nasal shape. Communications Biology. v. 6, p. 000-000, 2023. Qualis: C
98.	LOCOSSELLI, GIULIANO MASELLI ; BUCKERIDGE, MARCOS SILVEIRA. The science of urban trees to promote well-being. TREES-STRUCTURE AND FUNCTION. v. 1, p. 1, 2023. Qualis: Não identificado (TREES-STRUCTURE AND FUNCTION)
99.	LORENZETTI, ALAN P. R. ; KUSEBAUCH, ULRIKE ; ZARAMELA, LÍVIA S. ; WU, WEI-JU ; DE ALMEIDA, JOÃO P. P. ; TURKARSLAN, SERDAR ; L. G. DE LOMANA, ADRIÁN ; GOMES-FILHO, JOSÉ V. ; VÊNCIO, RICARDO Z. N. ; MORITZ, ROBERT L. ; Koide, Tie ; BALIGA, NITIN S.. A Genome-Scale Atlas Reveals Complex Interplay of Transcription and Translation in an Archaeon. mSystems. v. Mar13, p. e0081622, 2023. Qualis: A1
100.	LUBIANA, TIAGO ; LOPES, RAFAEL ; MEDEIROS, PEDRO ; SILVA, JUAN CARLO ; GONCALVES, ANDRE NICOLAU AQUIME ; MARACAJA-COUTINHO, VINICIUS ; Nakaya, Helder I.. Ten quick tips for harnessing the power of ChatGPT in computational biology. PLOS COMPUTATIONAL BIOLOGY (ONLINE). v. 19, p. e1011319, 2023. Qualis: A1
101.	LÁZARI, CAROLINA DOS SANTOS ; RAMUNDO, MARIANA SEVERO ; TEN-CATEN, FELIPE ; BRESSAN, CLARISSE S. ; DE FILIPPIS, ANA MARIA BISPO ; MANULI, ERIKA REGINA ; DE MORAES, ISABELLA ; PEREIRA, GEOVANA MARIA ; CÔRTES, MARINA FARREL ; CANDIDO, DARLAN DA SILVA ; GERBER, ALEXANDRA L. ; GUIMARÃES, ANA PAULA ; FARIA, NUNO RODRIGUES ; Nakaya, Helder I. ; VASCONCELOS, ANA TEREZA R. ; BRASIL, PATRÍCIA ; PARANHOS-BACCALÀ, GLÁUCIA ; SABINO, ESTER CERDEIRA. Clinical markers of post-Chikungunya chronic inflammatory joint disease: A Brazilian cohort. PLoS Neglected Tropical Diseases. v. 17, p. e0011037, 2023. Qualis: A1
102.	MACIEIRA, BERNARDO PRETTI BECACICI ; LOCOSSELLI, GIULIANO MASELLI ; BUCKERIDGE, MARCOS SILVEIRA ; HARTMANN, HENRIK ; CUZZUOL, GERALDO ROGÉRIO FAUSTINI. Climatic regulation of the non-structural and structural carbon in the pioneer Senna multijuga and non-pioneer Hymenaea aurea trees of a humid tropical rainforest. TREES-STRUCTURE AND FUNCTION. v. 1, p. 1, 2023. Qualis: Não identificado (TREES-STRUCTURE AND FUNCTION)
103.	MAGRINO, JOSEPH ; MUNFORD, VERIDIANA ; MARTINS, DAVI JARDIM ; HOMMA, THAIS K. ; PAGE, BRENDAN ; GAUBITZ, CHRISTL ; FREIRE, BRUNA L. ; LERARIO, ANTONIO M. ; VILAR, JULIANA BRANDSTETTER ; AMORIN, ANTONIO ; LEÃO, EMÍLIA K.E. ; KOK, FERNANDO ; MENCK, CARLOS FM. ; JORGE, ALEXANDER AL. ; KELCH, BRIAN A.. A thermosensitive PCNA allele underlies an ataxia-telangiectasia-like disorder. JOURNAL OF BIOLOGICAL CHEMISTRY. v. 299, p. 104656, 2023. Qualis: A1
104.	MANFRERE, KELLY CRISTINA GOMES ; TORREALBA, MARINA PASSOS ; FERREIRA, FREDERICO MORAES ; DE SOUSA, EMANUELLA SARMENTO ALHO ; MIYASHIRO, DENIS ; TEIXEIRA, FRANCIANE MOURADIAN EMIDIO ; CUSTÓDIO, RICARDO WESLEY ALBERCA ; Nakaya, Helder I. ; RAMOS, YASMIN ALEFE LEUZZI ; SOTTO, MIRIAN NACAGAMI ; WOETMANN, ANDERS ; ØDUM, NIELS ; DUARTE, ALBERTO JOSÉ DA SILVA ; SANCHES, JOSÉ ANTONIO ; SATO, MARIA NOTOMI. Imbalanced IL-1B and IL-18 Expression in Sézary Syndrome. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 24, p. 4674, 2023. Qualis: A2
105.	Marcos Buckeridge. Plant Cell Wall. 1 ed. Boca Raton: CRC Press, 2023. v. 1, p. 516.
106.	MARTINS, JULIANA R. ; PINHEIRO, DANIEL G. ; AHMED, AMY C. C. ; Giuliatti, Silvana ; MIZZEN, CRAIG A. ; BITONDI, MÁRCIA M. G.. Genome¿wide analysis of the chromatin sites targeted by HEX 70a storage protein in the honeybee brain and fat body. INSECT MOLECULAR BIOLOGY. v. n/a, p. 1-28, 2023. Qualis: A1
107.	MARTÍN-ADRADOS, BEATRIZ ; WCULEK, STEFANIE K. ; FERNÁNDEZ-BRAVO, SERGIO ; TORRES-RUIZ, RAÚL ; VALLE-NOGUERA, ANA ; GOMEZ-SÁNCHEZ, MARIA JOSÉ ; HERNÁNDEZ-WALIAS, JOSÉ CARLOS ; FERREIRA, FREDERICO MORAES ; CORRALIZA, ANA MARÍA ; SANCHO, DAVID ; ESTEBAN, VANESA ; RODRIGUEZ-PERALES, SANDRA ; CRUZ-ADALIA, ARÁNZAZU ; Nakaya, Helder I. ; SALAS, AZUCENA ; BERNARDO, DAVID ; CAMPOS-MARTÍN, YOLANDA ; MARTÍNEZ-ZAMORANO, ELENA ; MUÑOZ-LÓPEZ, DIEGO ; GÓMEZ DEL MORAL, MANUEL ; et.al. Expression of HMGCS2 in intestinal epithelial cells is downregulated in inflammatory bowel disease associated with endoplasmic reticulum stress. Frontiers in Immunology. v. 14, p. 1, 2023. Qualis: A1
108.	MELO, GUILHERME A. ; XU, TIANHAO ; CALÔBA, CAROLINA ; SCHUTTE, ALEXANDER ; PASSOS, THAÍS O. ; NETO, MOISÉS A.N. ; BRUM, GABRIELLE ; OLIVEIRA-VIEIRA, BÁRBARA ; HIGA, LUIZA ; MONTEIRO, FÁBIO L.L. ; BERBERT, LUIZ ; GONÇALVES, ANDRÉ N.A. ; TANURI, AMILCAR ; VIOLA, JOÃO P.B. ; WERNECK, MIRIAM B.F. ; Nakaya, Helder I. ; PIPKIN, MATTHEW E. ; MARTINEZ, GUSTAVO J. ; PEREIRA, RENATA M.. Cutting Edge: Polycomb Repressive Complex 1 Subunit Cbx4 Positively Regulates Effector Responses in CD8 T Cells. JOURNAL OF IMMUNOLOGY. v. 211, p. 721-726, 2023. Qualis: C
109.	MENEZES, PATRICIA REGINA ; TRUFEN, CARLOS EDUARDO MADUREIRA ; LICHTENSTEIN, FLAVIO ; PELLEGRINA, DIOGO VIEIRA DA SILVA ; REIS, EDUARDO MORAES ; ONUKI, JANICE. Transcriptome profile analysis reveals putative molecular mechanisms of 5-aminolevulinic acid toxicity. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS. v. 1, p. 109540, 2023. Qualis: A2
110.	MERCURI, RAFAEL L. V. ; CONCEIÇÃO, HELENA B. ; GUARDIA, GABRIELA D. A. ; GOLDSTEIN, GABRIEL ; VIBRANOVSKI, MARIA D. ; HINSKE, LUDWIG C. ; GALANTE, PEDRO A. F.. Retro-miRs: novel and functional miRNAs originating from mRNA retrotransposition. Mobile DNA. v. 14, p. 12, 2023. Qualis: A1
111.	Michelassi, Gabriel C. ; Bortoletti, Henrique S. ; Pinheiro, Tuany D. ; Nobayashi, Thiago ; de Barros, Fabio R. D. ; Testa, Rafael L. ; SILVA, ANDRÉIA F. ; REVERS, MIRIAN C. ; PORTOLESE, JOANA ; Pedrini, Helio ; BRENTANI, HELENA ; Nunes, Fatima L. S. ; MACHADO-LIMA, ARIANE. Classification of Facial Images to Assist in the Diagnosis of Autism Spectrum Disorder: A Study on the Effect of Face Detection and Landmark Identification Algorithms. Em: Naldi, M.C.; Bianchi, R.A.C.. (Org.). Intelligent Systems. BRACIS 2023. Lecture Notes in Computer Science. 1ed. 2023.v. 14196, p. 261-275.
112.	MIRANDA, RAQUEL P. ; TURRINI, PAULA C. G. ; BONADIO, DORA T. ; ZERILLO, MARCELO M. ; BERSELLI, ARTHUR P. ; CRESTE, SILVANA ; Van Sluys, Marie-Anne. Genome Organization of Four Brazilian Xanthomonas albilineans Strains Does Not Correlate with Aggressiveness. MICROBIOLOGY SPECTRUM. v. XX, p. 1-17, 2023. Qualis: A2
113.	MORETTI, EDUARDO H ; RODRIGUES, ABNER C ; MARQUES, BRUNO V ; TOTOLA, LEONARDO T ; FERREIRA, CAROLINE B ; BRITO, CAMILA F ; MATOS, CAROLINE M ; DA SILVA, FILIPE A ; SANTOS, ROBSON A S ; LOPES, LUCIANA B ; MOREIRA, THIAGO S ; AKAMINE, ELIANA H ; BACCALA, LUIZ A ; Fujita, André ; STEINER, ALEXANDRE A. Autoregulation of blood flow drives early hypotension in a rat model of systemic inflammation induced by bacterial lipopolysaccharide. PNAS Nexus. v. 2, p. pgad014, 2023. Qualis: Não identificado (PNAS NEXUS)
114.	MOURA DIAS, HENRIQUE ; VIEIRA, ANDREIA PRATA ; DE JESUS, ERIKA MARIA ; de Setta, Nathalia ; BARROS, GESIELE ; Van Sluys, Marie-Anne. Functional and comparative analysis of THI1 gene in grasses with a focus on sugarcane. PeerJ. v. 11, p. e14973-27, 2023. Qualis: A2
115.	NAKAYA, HELDER T. I. (UNIFESP) Encontro Anual de Riscos Globais. Palestrante convidado. 2023. Apresentação de Trabalho/Simpósio
116.	NAKAYA, HELDER T. I. (Ciudad de México) Seminarios Bioinformatica-Genomica México UNAM. Palestrante convidado. 2023. Apresentação de Trabalho/Seminário
117.	NAKAYA, HELDER TAKASHI IMOTO. Summer School on Data Science 2023@FGV RJ. 2023. Apresentação de Trabalho/Simpósio
118.	NAKAYA, HELDER TAKASHI IMOTO. Systems biology of vaccinology TRANSVAC2 M13 training course@Italy. 2023. Apresentação de Trabalho/Seminário
119.	NAKAYA, HELDER TAKASHI IMOTO. Webinar on Global Catastrophic Biological Risks@Condor Initiative. 2023. Apresentação de Trabalho/Seminário
120.	NAKAYA, HELDER TAKASHI IMOTO. Seminários do IEP Einstein. 2023. Apresentação de Trabalho/Seminário
121.	NAKAYA, HELDER TAKASHI IMOTO. Overview of integrative approaches in vaccinology - VSV EBOPLUS meeting@Italy. 2023. Apresentação de Trabalho/Seminário
122.	NAKAYA, HELDER TAKASHI IMOTO. Challenges on Data Integration - VSV EBOPLUS meeting@Italy. 2023. Apresentação de Trabalho/Simpósio
123.	NAKAYA, HELDER TAKASHI IMOTO. Bioinformatics Forum@Natal. 2023. Apresentação de Trabalho/Simpósio
124.	NAKAYA, HELDER TAKASHI IMOTO. Convidado IMPA - Instituto de Matemática Pura e Aplicada @RJ. 2023. Apresentação de Trabalho/Simpósio
125.	NAKAYA, HELDER TAKASHI IMOTO. Palestrante convidado @ Centro de Biotecnologia da UFRGS. 2023. Apresentação de Trabalho/Seminário
126.	NAKAYA, HELDER TAKASHI IMOTO. Institut Pasteur America regional meeting. 2023. Apresentação de Trabalho/Simpósio
127.	NAKAYA, HELDER TAKASHI IMOTO. CÊPODE@Centro de Estudos Sobre o Genoma Humano e Células-Tronco da Universidade de São Paulo. 2023. Apresentação de Trabalho/Simpósio
128.	NAKAYA, HELDER TAKASHI IMOTO. Course Single Cell Genomics - Latin America and the Caribbean@RJ. 2023. Apresentação de Trabalho/Simpósio
129.	NAKAYA, HELDER TAKASHI IMOTO. São Paulo Innovation and Science Diplomacy School, InnSciD@SP. 2023. Apresentação de Trabalho/Simpósio
130.	NAKAYA, HELDER TAKASHI IMOTO. V Simpósio Nacional em Ciências Farmacêuticas (V SINCIFAR)@BH. 2023. Apresentação de Trabalho/Simpósio
131.	NAKAYA, HELDER TAKASHI IMOTO. MedTrop Congress Mesa-redonda: Big Data em Medicina Tropical@Salvador. 2023. Apresentação de Trabalho/Congresso
132.	NAKAYA, HELDER TAKASHI IMOTO. MedTrop Congress Mesa-redonda: Epidemiologia Digital@Salvador. 2023. Apresentação de Trabalho/Congresso
133.	NAKAYA, HELDER TAKASHI IMOTO. MedTrop Congress Miniconferência: Relações entre microbiota e imunidade@Salvador. 2023. Apresentação de Trabalho/Congresso
134.	NAKAYA, HELDER TAKASHI IMOTO. 8º Congresso do Centro-Oeste sobre Doenças Infecciosas Emergentes, Reemergentes e Negligenciadas (DIERN)@Campo Grande. 2023. Apresentação de Trabalho/Congresso
135.	NAKAYA, HELDER TAKASHI IMOTO. Centro de Investigação Translacional em Oncologia (CTO)@ICESP. 2023. Apresentação de Trabalho/Seminário
136.	NAKAYA, HELDER TAKASHI IMOTO. 34º Congresso Brasileiro de Virologia@Ouro Preto, MG. 2023. Apresentação de Trabalho/Congresso
137.	NAKAYA, HELDER TAKASHI IMOTO. III Simpósio Internacional Einstein de Medicina de Precisão@SP. 2023. Apresentação de Trabalho/Simpósio
138.	NAKAYA, HELDER TAKASHI IMOTO. XIV Simpósio Sul de Imunologia@Porto Alegre. 2023. Apresentação de Trabalho/Simpósio
139.	NAKAYA, HELDER TAKASHI IMOTO. 47th Congress of the Brazilian Society of Immunology@Ouro Preto. 2023. Apresentação de Trabalho/Congresso
140.	NAKAYA, HELDER TAKASHI IMOTO. Advancing Neglected Diseases Drug Discovery in Endemic Areas LOLA10@UNICAMP. 2023. Apresentação de Trabalho/Simpósio
141.	NAKAYA, HELDER TAKASHI IMOTO. XXII Workshop do Programa Interunidades de Pós-Graduação em Bioinformática@USP. 2023. Apresentação de Trabalho/Seminário
142.	NAKAYA, HELDER TAKASHI IMOTO. LVII SUPFAB Semana Paulista de Farmácia e Bioquímica@USP. 2023. Apresentação de Trabalho/Simpósio
143.	NAKAYA, HELDER TAKASHI IMOTO. Congresso Brasileiro de Hematologia, Hemoterapia e Terapia Celular (HEMO 2023)@SP. 2023. Apresentação de Trabalho/Congresso
144.	NAKAYA, HELDER TAKASHI IMOTO. 50 anos do curso de Bacharelado em Química@IQSC. 2023. Apresentação de Trabalho/Simpósio
145.	NAKAYA, HELDER TAKASHI IMOTO. XVII Jornada de Iniciação Científica e XII Jornada de Pós-graduação (PPGO) do INCA@RJ. 2023. Apresentação de Trabalho/Simpósio
146.	NAKAYA, HELDER TAKASHI IMOTO. International Union of Immunological Societies IUIS 2023 Congress@Cape Town, África do Sul. 2023. Apresentação de Trabalho/Congresso
147.	NAKAYA, HELDER TAKASHI IMOTO. ConBio 26º Congresso de Biólogos do CRBio-01@SP. 2023. Apresentação de Trabalho/Congresso
148.	NAKAYA, HELDER TAKASHI IMOTO. Inteligência Artificial na vida dos farmacêuticos - 0909018 ? Farmacoterapia II@USP. 2023. Apresentação de Trabalho/Seminário
149.	NAKAYA, HELDER TAKASHI IMOTO. Curso Ciências Moleculares USP. 2023. Apresentação de Trabalho/Seminário
150.	NASCIMENTO, CAMILA ; KYUNGHEE KIM, HELENA ; VILLELA NUNES, PAULA ; PARAISO LEITE, RENATA ELAINE ; KATIA CRISTINA, DE OLIVEIRA ; BARBOSA, ANDRÉ ; BERNARDI BERTONHA, FERNANDA ; Moreira-Filho, Carlos Alberto ; JACOB-FILHO, WILSON ; NITRINI, RICARDO ; PASQUALUCCI, CARLOS A. ; TENENHOLZ GRINBERG, LEA ; KIMIE SUEMOTO, CLAUDIA ; Brentani, Helena Paula ; LAFER, BENY. Gene expression alterations in the postmortem hippocampus from older patients with bipolar disorder - A hypothesis generating study. JOURNAL OF PSYCHIATRIC RESEARCH. v. 164, p. 329-334, 2023. Qualis: A1
151.	NEAMTU, A. ; MOCCI, F. ; LAAKSONEN, A. ; barroso da silva, f l. Towards an optimal monoclonal antibody with higher binding affinity to the receptor-binding domain of SARS-CoV-2 spike proteins from different variants. COLLOIDS AND SURFACES B-BIOINTERFACES. v. 221, p. 112986, 2023. Qualis: A1 (COLLOIDS AND SURFACES. B, BIOINTERFACES)
152.	OLIVEIRA, JAMILLE RAMOS ; RUIZ, CESAR MANUEL REMUZGO ; MACHADO, RAFAEL RAHAL GUARAGNA ; MAGAWA, JHOSIENE YUKARI ; DAHER, ISABELA PAZOTTI ; URBANSKI, ALYSSON HENRIQUE ; SCHMITZ, GABRIELA JUSTAMANTE HÄNDEL ; ARCURI, HELEN ANDRADE ; FERREIRA, MARCELO ALVES ; SASAHARA, GREYCE LURI ; DE MEDEIROS, GIULIANA XAVIER ; JÚNIOR, ROBERTO CARLOS VIEIRA SILVA ; DURIGON, EDISON LUIZ ; BOSCARDIN, SILVIA BEATRIZ ; ROSA, DANIELA SANTORO ; SCHECHTMAN, DEBORAH ; Nakaya, Helder I. ; CUNHA-NETO, EDECIO ; GADERMAIER, GABRIELE ; KALIL, JORGE ; et.al. Immunodominant antibody responses directed to SARS-CoV-2 hotspot mutation sites and risk of immune escape. Frontiers in Immunology. v. 13, p. 1, 2023. Qualis: A1
153.	OLIVEIRA, M. L. G. ; VEIGA-CASTELLI, L. C. ; CASTELLI, E. C. ; SOUZA, A. S. ; CARDILI, R. N. ; DONADI, EDUARDO A. ; Guiliatti, S. ; SABBAGH, A. ; MENDES-JUNIOR, C.. Evidence for Epistatic Interaction between HLA-G and LILRB1 in the Pathogenesis of Nonsegmental Vitiligo. Cells. v. 12, p. 630, 2023. Qualis: A1
154.	OLIVOS CAICEDO, KELLY YOVANI ; FERNANDEZ-MATERAN, FRANCELYS V. ; HERNANDEZ, ALVARO G. ; DANIEL, STEVEN L. ; ALVES, JOAO M. P. ; RIDLON, JASON M.. Complete genome sequence of the archetype bile acid 7α-dehydroxylating bacterium, VPI12708, isolated from human feces, circa 1980. Microbiology Resource Announcements. v. 8, p. 10.1128/MRA.00, 2023. Qualis: C
155.	PAGLIUSO, DÉBORA ; PEDRO DE JESUS PEREIRA, JOÃO ; ULRICH, JOÃO CRISTIANO ; BARBOSA COTRIM, MARYCEL ELENA ; Buckeridge, Marcos S. ; GRANDIS, Adriana. Carbon allocation of Spirodela polyrhiza under boron toxicity. Frontiers in Plant Science. v. 14, p. 1208888, 2023. Qualis: A1
156.	PICINATO, BEATRIZ A. ; Santos, VHF ; ZARAMELA, LIVIA S. ; Vencio, R. Z. N. ; KOIDE, T.. Comparative transcriptomics reveals circular RNAs are conserved among archaea. 2023. Apresentação de Trabalho/Congresso
157.	PILLAT, MICHELI MAINARDI ; AYUPE, ANA CAROLINA ; JUVENAL, GUILHERME ; MEINERZ, CARINE ; GLASER, TALITA ; DA SILVA PELLEGRINA, DIOGO VIEIRA ; PAIVA, DAISYLEA SOUZA ; MELLO, CARLOS FERNANDO ; LONGO, BEATRIZ MONTEIRO ; REIS, EDUARDO MORAES ; ULRICH, HENNING. Differentiated Embryonic Neurospheres from Familial Alzheimer?s Disease Model Show Innate Immune and Glial Cell Responses. STEM CELL REVIEWS AND REPORTS. v. 1, p. 1, 2023. Qualis: Não identificado (STEM CELL REVIEWS AND REPORTS)
158.	PINHEIRO DA SILVA, FABIANO ; GONÇALVES, ANDRÉ NICOLAU AQUIME ; DUARTE'NETO, AMARO NUNES ; DIAS, THOMAZ LÜSCHER ; BARBEIRO, HERMES VIEIRA ; BREDA, CRISTIANE NAFFAH SOUZA ; BREDA, LEANDRO CARVALHO DANTAS ; CÂMARA, NIELS OLSEN SARAIVA ; Nakaya, Helder I.. Transcriptome analysis of six tissues obtained post-mortem from sepsis patients. JOURNAL OF CELLULAR AND MOLECULAR MEDICINE (PRINT). v. 27, p. 3157-3167, 2023. Qualis: A2
159.	PRADO, CAROLINE ALIANE DE SOUZA ; FONSECA, DENNYSON LEANDRO M. ; SINGH, YOUVIKA ; FILGUEIRAS, IGOR SALERNO ; BAIOCCHI, GABRIELA CRISPIM ; PLAÇA, DESIRÉE RODRIGUES ; MARQUES, ALEXANDRE H. C. ; DANTAS'KOMATSU, RAQUEL COSTA SILVA ; USUDA, JÚLIA N. ; FREIRE, PAULA PACCIELLI ; SALGADO, RANIERI COELHO ; NAPOLEAO, SARAH MARIA DA SILVA ; RAMOS, RODRIGO NALIO ; ROCHA, VANDERSON ; ZHOU, GUANGYAN ; CATAR, RUSAN ; MOLL, GUIDO ; CAMARA, NIELS OLSEN SARAIVA ; DE MIRANDA, GUSTAVO CABRAL ; NAKAYA, H. I. ; et.al. Integrative systems immunology uncovers molecular networks of the cell cycle that stratify COVID-19 severity. JOURNAL OF MEDICAL VIROLOGY. v. 95, p. 1, 2023. Qualis: B1
160.	PRAMIO, DIMITRIUS TANSINI ; VIECELI, FELIPE MONTELEONE ; VARELLA-BRANCO, ELISA ; GOES, CAROLINA PURCELL ; KOBAYASHI, GERSON SHIGERU ; DA SILVA PELEGRINA, DIOGO VIEIRA ; DE MORAES, BEATRIZ CAROLINE ; EL ALLAM, AICHA ; DE KUMAR, BONY ; JARA, GABRIEL ; FARFEL, JOSÉ MARCELO ; BENNETT, DAVID ALAN ; KUNDU, SOMANATH ; VIAPIANO, MARIANO S. ; REIS, EDUARDO MORAES REGO ; DE OLIVEIRA, PAULO SERGIO LOPES ; DOS SANTOS E PASSOS-BUENO, MARIA RITA ; ROTHLIN, CARLA V. ; GHOSH, SOURAV ; SCHECHTMAN, DEBORAH ; et.al. DNA methylation of the promoter region at the CREB1 binding site is a mechanism for the epigenetic regulation of brain specific PKMζ. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms. v. 1, p. 194909, 2023. Qualis: A1 (BIOCHIMICA ET BIOPHYSICA ACTA. GENE REGULATORY MECHANISMS)
161.	PRATES, L. ; LEMES, R. ; HÜNEMEIER, T. ; LEOMARDI, F.. Population-based change-point detection for the identification of homozygosity islands. BIOINFORMATICS. 2023. Qualis: A1
162.	Pu, Calton ; SUPREM, ABHIJIT ; Musaev, Aibek ; EDUARDO FERREIRA, J OAO. Evolution of Knowledge in Social Media and Their Relationship to an Evolving Real World. Em: 2023 IEEE 5th International Conference on Cognitive Machine Intelligence (CogMI), p. 18, 2023. Qualis: Não identificado (2023 IEEE 5th International Conference on Cognitive Machine Intelligence (CogMI))
163.	RAMOS, TAIANE COELHO ; Mourão-Miranda, Janaina ; Fujita, André. Spectral density-based clustering algorithms for complex networks. Frontiers in Neuroscience. v. 17, p. 926321, 2023. Qualis: A2
164.	REINKE, P. Y. ; SOUZA, E. E. ; GUNTHER, S. ; FALKE, S. ; LIESKE, J. ; EWERT, W. ; LOBODA, J. ; HERRMANN, A. ; MASHHOUR, A. R. ; KARNIČ ; USENIK, A. ; LINDIČ ; SEKIRNIK, A. ; BOTOSSO, V. F. ; SANTELLI, G. M. M. ; KAPRONEZAI, J. ; ARAUJO, M. V. ; SILVA-PEREIRA, T. T. ; FRANCISCO DE SOUZA FILHO, ANTÔNIO ; GUIMARAES, A. M. S. ; et.al. Calpeptin is a potent cathepsin inhibitor and drug candidate for SARS-CoV-2 infections. Communications Biology. v. x, p. x, 2023.Qualis: C
165.	RELVAS, CARLOS E. M. ; NAKATA, ASUKA ; CHEN, GUOAN ; BEER, DAVID G. ; Gotoh, Noriko ; Fujita, Andre. A model-based clustering algorithm with covariates adjustment and its application to lung cancer stratification. Journal of Bioinformatics and Computational Biology. v. 21, p. 2350019, 2023. Qualis: B1
166.	ROCHA, LÍLIAN KELLY FARIA LICARIÃO ; FERREIRA, PAULA ; GIANOTTI, MARCELO A. ; AVANCINI, JOÃO ; MENCK, CARLOS F. M. ; CASTRO, LIGIA P. ; DE OLIVEIRA, ZILDA NAJJAR PRADO ; RIVITTI, MARIA C. ; SAMORANO, LUCIANA P. ; PEREIRA, NAIURA VIEIRA ; FESTA NETO, CYRO. Imiquimod chemoprophylaxis for field cancerization in xeroderma pigmentosum patients-A prospective study. AUSTRALASIAN JOURNAL OF DERMATOLOGY. v. 64, p. 435-438, 2023. Qualis: Não identificado (AUSTRALASIAN JOURNAL OF DERMATOLOGY)
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185.	THEMOTEO, RAFAEL M. ; DE PAULA, VANESSA J. R. ; ROCHA, NICOLE K. R. ; BRENTANI, HELENA ; FORLENZA, ORESTES V.. Lithium Prevents Telomere Shortening in Cortical Neurons in Amyloid-Beta Induced Toxicity. NeuroSci. v. 4, p. 1-8, 2023. Qualis: Não identificado (NEUROSCI)
186.	TULLUME-VERGARA, PERCY O. ; CAICEDO, KELLY Y. O. ; TANTALEAN, JOSE F. C. ; Serrano, Myrna G. ; Buck, Gregory A. ; Teixeira, Marta M. G. ; SHAW, JEFFREY J. ; ALVES, JOAO M. P.. Genomes of Endotrypanum monterogeii from Panama and Zelonia costaricensis from Brazil: Expansion of Multigene Families in Leishmaniinae Parasites That Are Close Relatives of Leishmania spp.. PATHOGENS. v. 12, p. 1409, 2023. Qualis: A2
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2022

1.	A. M. Durham. Alinhamento de Sequências. 2022. Apresentação de Trabalho/Conferência ou palestra
2.	ABJAUDE, WALASON ; PRATI, BRUNA ; MUNFORD, VERIDIANA ; MONTENEGRO, ALINE ; LINO, VANESCA ; HERBSTER, SUELLEN ; RABACHINI, TATIANA ; TERMINI, LARA ; Menck, Carlos Frederico Martins ; BOCCARDO, ENRIQUE. ATM Pathway Is Essential for HPV-Positive Human Cervical Cancer-Derived Cell Lines Viability and Proliferation. PATHOGENS. v. 11, p. 637, 2022. Qualis: A2
3.	AKIO LUCCHEZI MIYAHARA, AUGUSTO ; WILD, TOM ; AFONSO SANDRE, ADRIANA ; MESQUITA PELLEGRINO, PAULO RENATO ; DA SILVA FILHO, CARLOS ALBERTO ; SILVEIRA BUCKERIDGE, MARCOS ; MASELLI LOCOSSELLI, GIULIANO. Developing and classifying urban biomes as a basis for nature-based solutions. URBAN CLIMATE. v. 45, p. 101251, 2022. Qualis: A1
4.	ALNOCH, ROBSON C. ; ALVES, GABRIELA S. ; SALGADO, JOSE C. S. ; DE ANDRADES, DIANDRA ; FREITAS, EMANUELLE N. DE ; NOGUEIRA, KAROLINE M. V. ; VICI, ANA C. ; OLIVEIRA, DOUGLAS P. ; CARVALHO-JR, VALDEMIRO P. ; SILVA, ROBERTO N. ; Buckeridge, Marcos S. ; MICHELIN, MICHELE ; TEIXEIRA, JOSÉ A. ; Polizeli, Maria de Lourdes T. M.. Immobilization and Application of the Recombinant Xylanase GH10 of Malbranchea pulchella in the Production of Xylooligosaccharides from Hydrothermal Liquor of the Eucalyptus (Eucalyptus grandis) Wood Chips. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 23, p. 13329, 2022. Qualis: A2
5.	Alves, Levy Bueno ; CASTILLO-ORDOÑEZ, WILLIAN ORLANDO ; Giuliatti, Silvana. Virtual screening and molecular dynamics study of natural products against Rab10 for the treatment of Alzheimer?s disease. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. v. 42, p. 1-21, 2022. Qualis: A3
6.	AMGARTEN, DEYVID ; IHA, BRUNO KOSHIN VÁZQUEZ ; PIROUPO, CARLOS MORAIS ; DA SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS. vHULK, a New Tool for Bacteriophage Host Prediction Based on Annotated Genomic Features and Neural Networks. Phage-Therapy Applications And Research. v. 00, p. phage.2021.0016, 2022. Qualis: Não identificado (PHAGE-THERAPY APPLICATIONS AND RESEARCH)
7.	ANTUNES, KRIST H. ; STEIN, RENATO T. ; FRANCESCHINA, CAROLINE ; DA SILVA, EMANUELLE F. ; DE FREITAS, DEISE N. ; SILVEIRA, JOSIANE ; MOCELLIN, MAGÁLI ; LEITÃO, LIDIANE ; FACHI, JOSÉ L. ; PRAL, LAÍS P. ; GONZALEZ, AMANDA ; OLIVEIRA, SARAH ; DUARTE, LEONARDO ; CASSÃO, GISELE ; GONÇALVES, JOÃO I.B. ; REIS, TATIANE M. ; ABBADI, BRUNO L ; DORNELLES, MAIELE ; SPEROTTO, NATHÁLIA D.M. ; SETUBAL, J. C. ; et.al. Short-chain fatty acid acetate triggers antiviral response mediated by RIG-I in cells from infants with respiratory syncytial virus bronchiolitis. EBIOMEDICINE. v. 77, p. 103891, 2022. Qualis: A1
8.	ARAUJO, C. ; SILVA, F. ; MELO, F. M. ; ZERPA, M. C. S. ; ARAUJO, M. V. ; GUIMARÃES, A. M. S.. As bactérias do complexo Mycobacterium tuberculosis escapam do fagossomo em diferentes períodos temporais e não necessitam da acidificação fagossomal. Em: II Host-Pathogen Interaction Meeting, 2022, São Paulo. Proceedings of the II Host-Pathogen Interaction Meeting, v. 1, p. 1, 2022.
9.	ARAUJO, JOSÉ DENEY ; SANTOS-E-SILVA, JUAN CARLO ; COSTA-MARTINS, ANDRÉ GUILHERME ; SAMPAIO, VANDERSON ; DE CASTRO, DANIEL BARROS ; de Souza, Robson F. ; GIDDALURU, JEEVAN ; RAMOS, PABLO IVAN P. ; PITA, ROBESPIERRE ; BARRETO, MAURICIO L. ; BARRAL-NETTO, MANOEL ; NAKAYA, HELDER I.. Tucuxi-BLAST: Enabling fast and accurate record linkage of large-scale health-related administrative databases through a DNA-encoded approach. PeerJ. v. 10, p. e13507, 2022. Qualis: A2
10.	BALCÃO, VICTOR M ; BASU, AAKASH ; CIEZA, BASILIO ; ROSSI, FERNANDO N ; PEREIRA, CARLA ; VILA, MARTA MDC ; Setubal, João C ; HA, TAEKJIP ; da Silva, Aline M. Pseudomonas -tailed lytic phages: genome mechanical analysis and putative correlation with virion morphogenesis yield. Future Microbiology. v. 17, p. 10.2217/fmb-202, 2022. Qualis: A3
11.	BALCÃO, VICTOR M. ; MORELI, FERNANDA C. ; SILVA, ERICA C. ; BELLINE, BIANCA G. ; MARTINS, LAYLA F. ; ROSSI, FERNANDO P. N. ; PEREIRA, CARLA ; VILA, MARTA M. D. C. ; da Silva, Aline M.. Isolation and Molecular Characterization of a Novel Lytic Bacteriophage that Inactivates MDR Klebsiella Pneumoniae Strains. PHARMACEUTICS. v. 14, p. 1421, 2022. Qualis: A1
12.	BARRERA, JUNIOR ; HASHIMOTO, RONALDO F. ; HIRATA, Nina S. T. ; HIRATA, R. ; REIS, MARCELO S.. From Mathematical Morphology to machine learning of image operators. SÃO PAULO JOURNAL OF MATHEMATICAL SCIENCES. v. 16, p. 616-657, 2022. Qualis: B3
13.	Barroso da Silva, Fernando L. Palestra convidada: Fenômenos físicos peculiares em interações biomoleculares dependentes de pH. 2022. Apresentação de Trabalho/Conferência ou palestra
14.	Barroso da Silva, Fernando L. Palestra convidada: Developing and applying bioinformatic methods with a biophysical approach: from food, biomaterials to virus and antibody design. 2022. Apresentação de Trabalho/Conferência ou palestra
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32.	CASTRO E SILVA, MARCOS ARAÚJO ; FERRAZ, TIAGO ; COUTO-SILVA, CAINÃ M ; LEMES, RENAN B ; NUNES, KELLY ; COMAS, DAVID ; Hünemeier, Tábita. Population Histories and Genomic Diversity of South American Natives. MOLECULAR BIOLOGY AND EVOLUTION. v. 39, p. 000-000, 2022. Qualis: A1
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35.	CONTATO, ALEX GRAÇA ; VICI, ANA CLAUDIA ; PINHEIRO, VANESSA ELISA ; OLIVEIRA, TÁSSIO BRITO DE ; FREITAS, EMANUELLE NEIVERTH DE ; ARANHA, GUILHERME MAURO ; VALVASSORA JUNIOR, ALMIR LUIZ APARECIDO ; RECHIA, CAREM GLEDES VARGAS ; BUCKERIDGE, MARCOS SILVEIRA ; POLIZELI, MARIA DE LOURDES TEIXEIRA DE MORAES. Comparison of Trichoderma longibrachiatum Xyloglucanase Production Using Tamarind (Tamarindus indica) and Jatoba (Hymenaea courbaril) Seeds: Factorial Design and Immobilization on Ionic Supports. Fermentation-Basel. v. 8, p. 510, 2022. Qualis: Não identificado (FERMENTATION-BASEL)
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37.	CRUNFLI, FERNANDA ; CARREGARI, VICTOR C. ; VERAS, FLAVIO P. ; SILVA, LUCAS S. ; NOGUEIRA, MATEUS HENRIQUE ; ANTUNES, ANDRÉ SARAIVA LEÃO MARCELO ; VENDRAMINI, PEDRO HENRIQUE ; VALENÇA, ALINE GAZZOLA FRAGNANI ; BRANDÃO-TELES, CAROLINE ; ZUCCOLI, GIULIANA DA SILVA ; REIS-DE-OLIVEIRA, GUILHERME ; SILVA-COSTA, LÍCIA C. ; SAIA-CEREDA, VERÔNICA MONTEIRO ; SMITH, BRADLEY J. ; CODO, ANA CAMPOS ; DE SOUZA, GABRIELA F ; MURARO, STÉFANIE P. ; PARISE, PIERINA LORENCINI ; TOLEDO-TEIXEIRA, DANIEL A. ; NAKAYA, H. I. ; et.al. Morphological, cellular, and molecular basis of brain infection in COVID-19 patients. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA. v. 119, p. 1, 2022. Qualis: A1
38.	CRUZ, JOSIANE VIANA ; ROSA, JOAQUÍN MARÍA CAMPOS ; KIMANI, NJOGU MARK ; Giuliatti, Silvana ; DOS SANTOS, CLEYDSON BRENO RODRIGUES. The Role of Celecoxib as a Potential Inhibitor in the Treatment ofInflammatory Diseases - A Review. CURRENT MEDICINAL CHEMISTRY. v. 29, p. 3028-3049, 2022. Qualis: A2
39.	CUNHA, MATEUS TRINCONI ; DE SOUZA BORGES, ANA PAULA ; CARVALHO JARDIM, VINICIUS ; Fujita, André ; DE CASTRO, GILBERTO. Predicting survival in metastatic non-small cell lung cancer patients with poor ECOG-PS: A single-arm prospective study. Cancer Medicine. v. 1, p. 1-11, 2022. Qualis: A3
40.	DA COSTA, DIOGO RICARDO ; Fujita, André ; BATISTA, ANTONIO MARCOS ; SALES, MATHEUS ROLIM ; SZEZECH JR, JOSÉ DANILO. Conservative generalized bifurcation diagrams and phase space properties for oval-like billiards. CHAOS SOLITONS & FRACTALS. v. 155, p. 111707, 2022. Qualis: A3 (CHAOS, SOLITONS & FRACTALS)
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114.	LIMA, LÍDIA DOS PASSOS ; PEREIRA, JULIANA BIAR ; FLORES, ANTHONY JHOAO FASABI ; LORENZETTI, ALAN PÉRICLES RODRIGUES ; BOECHAT, ANA LAURA ; PEREDA, MARIA CLAUDIA ; GUALTIERI, SOPHIA ; DO PRADO, DANIELE FERREIRA ; ROCHA, DIEGO ; CESETI, LUCAS DE MORAES ; BALDINI, REGINA LÚCIA ; FARAH, CHUCK S. ; Koide, Tie ; BENEDETTI, CELSO EDUARDO ; ALVAREZ-MARTINEZ, CRISTINA E.. An Extracytoplasmic Function Sigma Factor Required for Full Virulence in Xanthomonas citri pv. citri. JOURNAL OF BACTERIOLOGY. v. 204, p. e0062421, 2022. Qualis: A3
115.	LOPES-JUNIOR, E. H. ; BERTEVELLO, C. R. ; SILVEIRA, GILBERT O. ; GUEDES, C. B. ; RODRIGUES, G. D. ; RIBEIRO, V. S. ; AMARAL, M. S. ; KANAMURA, C. T. ; PINTO, P. L. S. ; KRUGER, R. F. ; Verjovski-Almeida, S. ; Oliveira, Katia C.. Human tumor necrosis factor alpha affects the egg-laying dynamics and glucose metabolism of Schistosoma mansoni adult worms in vitro. Parasites & Vectors. v. 15, p. 176, 2022. Qualis: A1
116.	LOUSA, D. ; SOARES, C. M. ; Barroso da Silva, Fernando L.. Computational approaches to foster innovation in the treatment and diagnosis of infectious diseases. Frontiers in Medical Technology. v. 4, p. 841088, 2022. Qualis: Não identificado (FRONTIERS IN MEDICAL TECHNOLOGY)
117.	LUNKAD, R. ; Barroso da Silva, Fernando L. ; KO?OVAN, P.. Both Charge-Regulation and Charge-Patch Distribution Can Drive Adsorption on the Wrong Side of the Isoelectric Point. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY. v. 144, p. 1813-1825, 2022. Qualis: A1
118.	LÜSCHER-DIAS, THOMAZ ; SIQUEIRA DALMOLIN, RODRIGO JULIANI ; DE PAIVA AMARAL, PAULO ; ALVES, TIAGO LUBIANA ; SCHUCH, VIVIANE ; FRANCO, GLÓRIA REGINA ; Nakaya, Helder I.. The evolution of knowledge on genes associated with human diseases. Iscience. v. 25, p. 103610, 2022. Qualis: Não identificado (ISCIENCE)
119.	MARQUIONI, VINÍCIUS ; ROSSI, FERNANDO PACHECO NOBRE ; MENDONÇA, DEBORAH CEZAR ; MARTINS, LAYLA FARAGE ; Behlau, Franklin ; SETUBAL, JOÃO CARLOS ; DA SILVA, ALINE MARIA ; NOVO-MANSUR, MARIA TERESA MARQUES. Isolation and characterization of vB_XciM_LucasX, a new jumbo phage that infects Xanthomonas citri and Xanthomonas fuscans. PLoS One. v. 17, p. e0266891, 2022. Qualis: A1
120.	MARTINS, DAVI J. ; TIRMAN, STEPHANIE ; QUINET, ANNABEL ; MENCK, CARLOS F. M.. Detection of Post-Replicative Gaps Accumulation and Repair in Human Cells Using the DNA Fiber Assay. Jove-Journal of Visualized Experiments. v. 180, p. 63448, 2022. Qualis: B1 (JOURNAL OF VISUALIZED EXPERIMENTS)
121.	MARUYAMA, SANDRA REGINA ; FUZO, CARLOS ALESSANDRO ; OLIVEIRA, ANTONIO EDSON R. ; ROGERIO, LUANA APARECIDA ; TAKAMIYA, NAYORE TAMIE ; PESSENDA, GABRIELA ; DE MELO, ENALDO VIEIRA ; DA SILVA, ANGELA MARIA ; JESUS, AMÉLIA RIBEIRO ; CARREGARO, VANESSA ; Nakaya, Helder I. ; ALMEIDA, ROQUE PACHECO ; DA SILVA, JOÃO SANTANA. Insight Into the Long Noncoding RNA and mRNA Coexpression Profile in the Human Blood Transcriptome Upon Leishmania infantum Infection. Frontiers in Immunology. v. 13, p. 1, 2022. Qualis: A1
122.	MELLO-ANDRADE, FRANCYELLI ; GUEDES, ADRIANA P.M. ; PIRES, WANESSA C. ; VELOZO-SÁ, VIVIANNE S. ; DELMOND, KEZIA A. ; MENDES, DAVI ; MOLINA, MATHEUS S. ; MATUDA, LARISSA ; DE SOUSA, MARIA ALICE MONTES ; MELO-REIS, PAULO ; GOMES, CLEVER C. ; CASTRO, CARLOS HENRIQUE ; ALMEIDA, MÁRCIO AURÉLIO P. ; Menck, Carlos F.M. ; BATISTA, ALZIR A. ; BURIKHANOV, RAVSHAN ; RANGNEKAR, VIVEK M. ; SILVEIRA-LACERDA, ELISÂNGELA. Ru(II)/amino acid complexes inhibit the progression of breast cancer cells through multiple mechanism-induced apoptosis. JOURNAL OF INORGANIC BIOCHEMISTRY. v. 226, p. 111625, 2022. Qualis: A2
123.	MENDES DE OLIVEIRA, EDSON ; SILVA, JACQUELINE C. ; ASCAR, THAIS P. ; SANDRI, SILVANA ; MARCHI, ALEXANDRE F. ; MIGLIORINI, SILENE ; NAKAYA, HELDER T. I. ; FOCK, RICARDO A. ; CAMPA, ANA. Acute Inflammation Is a Predisposing Factor for Weight Gain and Insulin Resistance. PHARMACEUTICS. v. 14, p. 623, 2022. Qualis: A1
124.	MENDOZA-REVILLA, JAVIER ; CHACÓN-DUQUE, J. CAMILO ; FUENTES-GUAJARDO, MACARENA ; ORMOND, LOUISE ; WANG, KE ; HURTADO, MALENA ; VILLEGAS, VALERIA ; GRANJA, VANESSA ; ACUÑA-ALONZO, VICTOR ; JARAMILLO, CLAUDIA ; ARIAS, WILLIAM ; BARQUERA, RODRIGO ; GÓMEZ-VALDÉS, JORGE ; VILLAMIL-RAMÍREZ, HUGO ; SILVA DE CERQUEIRA, CAIO C. ; BADILLO RIVERA, KEYLA M. ; NIEVES-COLÓN, MARIA A. ; GIGNOUX, CHRISTOPHER R. ; WOJCIK, GENEVIEVE L. ; HÜNEMEIER, T. ; et.al. Disentangling Signatures of Selection Before and After European Colonization in Latin Americans. MOLECULAR BIOLOGY AND EVOLUTION. v. 39, p. 000-000, 2022. Qualis: A1
125.	MORAIS, MAURO CÉSAR CAFUNDÓ ; SILVA, DIOGO ; MILAGRE, MATHEUS MARQUES ; OLIVEIRA, MAYKON TAVARES DE ; PEREIRA, THAÍS ; SILVA, JOÃO SANTANA ; COSTA, LUCIANO DA F. ; MINOPRIO, PAOLA ; JUNIOR, ROBERTO MARCONDES CESAR ; GAZZINELLI, RICARDO ; DE LANA, MARTA ; Nakaya, Helder I.. Automatic detection of the parasite Trypanosoma cruzi in blood smears using a machine learning approach applied to mobile phone images. PeerJ. v. 10, p. e13470, 2022. Qualis: A2
126.	MORALES-VICENTE, D. A. ; ZHAO, L. ; SILVEIRA, GILBERT O. ; TAHIRA, A. C. ; AMARAL, MURILO S ; COLLINSIII, J. J. ; Verjovski-Almeida, S.. Single-cell RNA-seq analyses show that long non-coding RNAs are conspicuously expressed in Schistosoma mansoni gamete and tegument progenitor cell populations. Frontiers in Genetics. v. 13, p. 924877, 2022. Qualis: A2
127.	NAKAMURA­GOUVEA, NATALIA ; ALVES­LIMA, CICERO ; BENITES, L. FELIPE ; IHA, CINTIA ; MARACAJA­COUTINHO, VINICIUS ; ALIAGA­TOBAR, VICTOR ; AMARAL, MARCELLA ; YOKOYA, NAIR S ; MARINHO­SORIANO, ELIANE ; GRAMINHA, MARCIA A S ; COLLÉN, JONAS ; CABRAL OLIVEIRA, MARIANA ; Setubal, Joao Carlos ; COLEPICOLO, PIO. Insights into agar and secondary metabolite pathways from the genome of the red alga Gracilaria domingensis (Rhodophyta: Gracilariales). JOURNAL OF PHYCOLOGY. v. 1, p. 13238, 2022. Qualis: A1
128.	NAKAYA, HELDER I. Sociedade Brasileira de Virologia. 2022. Apresentação de Trabalho/Seminário
129.	NAKAYA, HELDER I. SBBq - palestrante convidado. 2022. Apresentação de Trabalho/Congresso
130.	NAKAYA, HELDER I. Genome Informatics @ Cambridge, UK. 2022. Apresentação de Trabalho/Simpósio
131.	NAKAYA, HELDER I. VSV-EBOPLUS @ Italia. 2022. Apresentação de Trabalho/Simpósio
132.	NAKAYA, HELDER I. CoV-IRT meeting. 2022. Apresentação de Trabalho/Seminário
133.	NAKAYA, HELDER I. Webinário FAPESP Computação: Ciência, Engenharia e Arte. 2022. Apresentação de Trabalho/Seminário
134.	NAKAYA, HELDER I. 2nd Human Cell Atlas Latin America Symposium. 2022. Apresentação de Trabalho/Simpósio
135.	NAKAYA, HELDER I. VI Congresso da ABCF @ Brasília. 2022. Apresentação de Trabalho/Congresso
136.	NAKAYA, HELDER I. International Centre for Genetic of Engineering and Biotechnology (ICGEB). 2022. Apresentação de Trabalho/Simpósio
137.	NAKAYA, HELDER I. Keynote speaker do I Congresso de Fisiologia e Patologia @ RJ. 2022. Apresentação de Trabalho/Simpósio
138.	NAKAYA, HELDER I. APHA Animal and Plant Health Agency @ Surrey, UK. 2022. Apresentação de Trabalho/Seminário
139.	NAKAYA, HELDER I. University of Oxford @ UK. 2022. Apresentação de Trabalho/Seminário
140.	NAKAYA, HELDER I. SPBCel @ UNIFESP. 2022. Apresentação de Trabalho/Seminário
141.	Nakaya, Helder Imoto. FioCruz Amazônia @ Manaus. 2022. Apresentação de Trabalho/Seminário
142.	NAKAYA, HELDER TAKASHI IMOTO. IX Curso de Férias em Imunologia @ ICB-USP. 2022. Apresentação de Trabalho/Seminário
143.	NAKAYA, HELDER TAKASHI IMOTO. I Curso de Verão on-line voltado para Bioinformática e Biologia Sintética @ UFBA. 2022. Apresentação de Trabalho/Seminário
144.	NAKAYA, HELDER TAKASHI IMOTO. II Fórum de Pesquisa Translacional: Conhecimento Transformado em Cuidado @ Instituto Sírio-Libanês de Ensino e Pesquisa. 2022. Apresentação de Trabalho/Simpósio
145.	NAKAYA, HELDER TAKASHI IMOTO. Simpósio Anual do CEPID-OCRC @ UNICAMP. 2022. Apresentação de Trabalho/Simpósio
146.	NAKAYA, HELDER TAKASHI IMOTO. Encontro em Modelagem Matemática e Computacional do Crescimento Tumoral @ LNCC. 2022. Apresentação de Trabalho/Simpósio
147.	NAKAYA, HELDER TAKASHI IMOTO. Computação: Ciência, Engenharia e Arte @ ACIESP-FAPESP. 2022. Apresentação de Trabalho/Seminário
148.	NAKAYA, HELDER TAKASHI IMOTO. GMA de Medicina de Precisão @ Hospital Israelita Albert Einstein. 2022. Apresentação de Trabalho/Seminário
149.	NAKAYA, HELDER TAKASHI IMOTO. Seminário para Instituto René Rachou @ Fiocruz-Minas. 2022. Apresentação de Trabalho/Seminário
150.	NAKAYA, HELDER TAKASHI IMOTO. Carreira e Comunicação Científica @ Fiocruz AM. 2022. Apresentação de Trabalho/Seminário
151.	NAKAYA, HELDER TAKASHI IMOTO. Emerging and Persistent Global Health Threats - NIH&FioCruz @ Rio de Janeiro. 2022. Apresentação de Trabalho/Congresso
152.	NAKAYA, HELDER TAKASHI IMOTO. Assuntos Médicos @ Daiichi Sankyo. 2022. Apresentação de Trabalho/Conferência ou palestra
153.	NAKAYA, HELDER TAKASHI IMOTO. World Smart Medication Day 2022 @ RedIF, ABCF, SBFTE. 2022. Apresentação de Trabalho/Congresso
154.	NAKAYA, HELDER TAKASHI IMOTO. kENUP Foundation @ Einstein. 2022. Apresentação de Trabalho/Seminário
155.	NAKAYA, HELDER TAKASHI IMOTO. XVIII Fórum Internacional de Sepse @ São Paulo. 2022. Apresentação de Trabalho/Congresso
156.	NAKAYA, HELDER TAKASHI IMOTO. 13th Latin American and Caribbean Congress of Immunology @ Cuba. 2022. Apresentação de Trabalho/Congresso
157.	NAKAYA, HELDER TAKASHI IMOTO. Symposium on Health Sciences in the State of São Paulo @ Scientific Platform Pasteur/USP. 2022. Apresentação de Trabalho/Simpósio
158.	NAKAYA, HELDER TAKASHI IMOTO. Live Comemorativa 50 anos SBI ? Imunologia do Amanhã @ SBI. 2022. Apresentação de Trabalho/Outra
159.	NAKAYA, HELDER TAKASHI IMOTO. XXI Congress of the Brazilian Society for Cell Biology @ SBBC. 2022. Apresentação de Trabalho/Congresso
160.	NAKAYA, HELDER TAKASHI IMOTO. Innovation and Science Diplomacy School @ InnScid. 2022. Apresentação de Trabalho/Congresso
161.	NAKAYA, HELDER TAKASHI IMOTO. 74ª Reunião Anual da SBPC - Mesa-redonda SBI @ UnB. 2022. Apresentação de Trabalho/Congresso
162.	NARDI, EDNILZA EVANGELISTA DA SILVA ; PADILHA, BRUNO ; KAMAURA, LEONARDO TADASHI ; Ferreira, João Eduardo. OpenImages Cyclists: Expandindo a Generalização na Detecção de Ciclistas em Câmeras de Segurança. Em: Simpósio Brasileiro de Banco de Dados, p. 229, 2022. Qualis: Não identificado (Simpósio Brasileiro de Banco de Dados)
163.	NASCIMENTO, CAMILA ; NUNES, PAULA V. ; KIM, HELENA K. ; LEITE, RENATA E. P. ; RODRIGUEZ, ROBERTA D. ; DE OLIVEIRA, KATIA CRISTINA ; BRENTANI, HELENA P. ; JACOB-FILHO, WILSON ; NITRINI, RICARDO ; PASQUALUCCI, CARLOS A. ; GRINBERG, LEA T. ; SUEMOTO, CLAUDIA K. ; LAFER, BENY. Increased levels of TAR DNA-binding protein 43 in the hippocampus of subjects with bipolar disorder: a postmortem study. JOURNAL OF NEURAL TRANSMISSION. v. 129, p. 95-103, 2022. Qualis: A3
164.	NAVARRO, BRUNO V. ; ELBL, PAULA ; DE OLIVEIRA, LEANDRO F. ; PIOVEZANI, AMANDA R. ; DOS SANTOS, ANDRÉ L. W. ; DE SOUZA, DIEGO T. ; DEMARCO, DIEGO ; Buckeridge, Marcos S. ; FLOH, ENY I. S.. Cell-to-cell trafficking patterns in cell lines of Araucaria angustifolia (Brazilian pine) with contrasting embryogenic potential. PLANT CELL TISSUE AND ORGAN CULTURE. v. 148, p. 81-93, 2022. Qualis: A1 (PLANT CELL, TISSUE AND ORGAN CULTURE)
165.	NEITZKE-MONTINELLI, VANESSA ; CALÔBA, CAROLINA ; MELO, GUILHERME ; FRADE, BIANCA B. ; CARAMEZ, ENZO ; MAZZOCCOLI, LUCIANO ; GONÇALVES, ANDRÉ N. A. ; Nakaya, Helder I. ; PEREIRA, RENATA M. ; WERNECK, MIRIAM B. F. ; VIOLA, JOÃO P. B.. Differentiation of Memory CD8 T Cells Unravel Gene Expression Pattern Common to Effector and Memory Precursors. Frontiers in Immunology. v. 13, p. 1, 2022. Qualis: A1
166.	OKU, AMANDA YUMI AMBRIOLA ; BARRETO, CANDIDA ; BRUNERI, GUILHERME ; BROCKINGTON, GUILHERME ; Fujita, Andre ; SATO, João Ricardo. Applications of graph theory to the analysis of fNIRS data in hyperscanning paradigms. Frontiers in Computational Neuroscience. v. 16, p. 975743, 2022. Qualis: A3
167.	OLIVEIRA, ARTUR ANDRÉ ; Buckeridge, Marcos S. ; HIRATA, ROBERTO. Detecting tree and wire entanglements with deep learning. TREES-STRUCTURE AND FUNCTION. v. 1, p. 1, 2022. Qualis: Não identificado (TREES-STRUCTURE AND FUNCTION)
168.	OLIVEIRA, L. G. ; ANGELO, Y. S. ; YAMAMOTO, P. ; CARREGARI, V. C. ; REIS-DE-OLIVEIRA, G. ; COSTA, L. ; DUQUE, E. A. ; SANTOS, N. B. ; ALMEIDA, G. M. ; FIRMINO, E. M. ; PAIVA, I. M. ; POLONIO, C. M. ; ZANLUQUI, N. G. ; OLIVEIRA, M. G. ; DAVANZO, G. G. ; AYUPE, M. C. ; SALGADO, C. L. ; SOUZA, A. F. ; ARAUJO, M. V. ; GUIMARAES, A. M. S. ; et.al. SARS-CoV -2 Infection Impacts Carbon Metabolism and Depends on Glutamine for Replication in Syrian Hamster Astrocytes. Journal of Neurochemistry,. p. 1, 2022. Qualis: A1 (JOURNAL OF NEUROCHEMISTRY)
169.	OLIVEIRA, M. L. G. ; Castelli, Erick C. ; Veiga-Castelli, Luciana Caricati ; PEREIRA, A. L. E. ; MARCORIN, L. ; CARRATTO, T. M. T. ; SOUZA, A. S. ; ANDRADE, H. S. ; SIMOES, A. L. ; DONADI, E. A. ; COURTIN, D. ; SABBAGH, A. ; GIULIATTI, S. ; MENDES-JUNIOR, C. T.. Genetic diversity of the LILRB1 and LILRB2 coding regions in an admixed Brazilian sample. New York: Cold Spring Harbor Laboratory. 2022. The Preprint Server for Biology
170.	OLIVEIRA, MARIA LUIZA GUIMARÃES ; Castelli, Erick C. ; VEIGA'CASTELLI, LUCIANA C. ; PEREIRA, ALISON LUIS E. ; MARCORIN, LETÍCIA ; CARRATTO, THÁSSIA M. T. ; SOUZA, ANDREIA S. ; ANDRADE, HELOISA S. ; SIMÕES, AGUINALDO L. ; DONADI, EDUARDO A. ; COURTIN, DAVID ; SABBAGH, AUDREY ; Giuliatti, Silvana ; MENDES'JUNIOR, CELSO TEIXEIRA. Genetic diversity of the LILRB1 and LILRB2 coding regions in an admixed Brazilian population sample. HLA. v. 100, p. 325-348, 2022. Qualis: Não identificado (HLA)
171.	OLIVEIRA, VALERIA MAIA ; ANDREOTE, FERNANDO DINI ; CORTELO, PATRICIA CARDOSO ; CASTRO-GAMBOA, IAN ; COSTA-LOTUFO, LETICIA V. ; POLIZELI, MARIA DE LOURDES T. M. ; THIEMANN, OTÁVIO H. ; SETUBAL, JOÃO CARLOS. Microorganisms: the secret agents of the biosphere, and their key roles in biotechnology. BIOTA NEOTROPICA (ONLINE. EDIÇÃO EM INGLÊS). v. 22, p. 22, 2022. Qualis: Não identificado (EDIÇÃO EM INGLÊS))
172.	ONGA, EVELYN AYUMI ; VÊNCIO, RICARDO Z. N. ; Koide, Tie. Low Salt Influences Archaellum-Based Motility, Glycerol Metabolism, and Gas Vesicles Biogenesis in Halobacterium salinarum. Microorganisms. v. 10, p. 2442, 2022. Qualis: B1
173.	PAGLIUSO, DÉBORA ; GRANDIS, Adriana ; FORTIRER, JANAINA SILVA ; CAMARGO, PLINIO ; FLOH, ENY IOCHEVET SEGAL ; BUCKERIDGE, MARCOS SILVEIRA. Duckweeds as Promising Food Feedstocks Globally. Agronomy-Basel. v. 12, p. 796, 2022. Qualis: Não identificado (AGRONOMY-BASEL)
174.	PAGLIUSO, DÉBORA ; NAVARRO, BRUNO VIANA ; Grandis, Adriana ; ZERILLO, MARCELO M. ; LAM, ERIC ; BUCKERIDGE, MARCOS SILVEIRA. NDP-Sugar Pathways Overview of Spirodela polyrhiza and Their Relevance for Bioenergy and Biorefinery. BioEnergy Research. v. 1, p. 1, 2022. Qualis: A1
175.	PALMEIRA, ONDINA ; MATOS, LARISSA R.B. ; NASLAVSKY, MICHEL S. ; BUENO, HELOISA M.S. ; SOLER, JÚLIA P. ; SETUBAL, JOÃO C. ; ZATZ, MAYANA. Longitudinal 16S rRNA gut microbiota data of infant triplets show partial susceptibility to host genetics. Iscience. v. 25, p. 103861, 2022. Qualis: Não identificado (ISCIENCE)
176.	PANNARAJ, PIA S. ; DA COSTA-MARTINS, ANDRÉ GUILHERME ; CERINI, CHIARA ; LI, FAN ; WONG, SOOK-SAN ; SINGH, YOUVIKA ; URBANSKI, ALYSSON H. ; GONZALEZ-DIAS, PATRÍCIA ; YANG, JULIANA ; WEBBY, RICHARD J. ; Nakaya, Helder I. ; ALDROVANDI, GRACE M.. Molecular alterations in human milk in simulated maternal nasal mucosal infection with live attenuated influenza vaccination. Mucosal Immunology. v. 1, p. 1, 2022. Qualis: A1
177.	PAPAIZ, DEBORA D?ANGELO ; RIUS, FLÁVIA EICHEMBERGER ; AYUB, ANA LUÍSA PEDROSO ; ORIGASSA, CLARICE S. ; GUJAR, HEMANT ; DE OLIVEIRA PESSOA, DIOGO ; MORAES REIS, EDUARDO ; NSENGIMANA, JÉRÉMIE ; NEWTON'BISHOP, JULIA ; MASON, CHRISTOPHER ; WEISENBERGER, DANIEL J. ; LIANG, GANGNING ; GALVONAS JASIULIONIS, MIRIAM. Genes regulated by DNA methylation are involved in distinct phenotypes during melanoma progression and are prognostic factors for patients. Molecular Oncology. v. 1, p. 1-1930, 2022. Qualis: A1 (MOLECULAR ECOLOGY)
178.	PATANÉ, JOSÉ S.L. ; Moreira, Leandro M. ; DE MELO TEIXEIRA, MARCUS ; MARTINS JR, JOAQUIM ; Setubal, João C. ; VARANI, ALESSANDRO M.. New insights into plant natriuretic peptide evolution: From the lysogenic conversion in Xanthomonas to the lateral transfer to the whitefly Bemisia tabaci. GENE. v. 821, p. 146326, 2022. Qualis: A4
179.	PETERSEN, VIVIAN ; SANTANA, MICAEL ; ALVES, J. MARCELO P. ; SUESDEK, LINCOLN. Genetic and morphological polymorphisms of Aedes scapularis (Diptera: Culicidae), vector of filariae and arboviruses. INFECTION GENETICS AND EVOLUTION. v. 97, p. 105193, 2022. Qualis: A2 (INFECTION, GENETICS AND EVOLUTION)
180.	PICINATO, BEATRIZ A. ; Santos, VHF ; Vencio, R. Z. N. ; ZARAMELA, LIVIA S. ; KOIDE, T.. Comparative transcriptomics among archaea to search for circular RNAs. 2022. Apresentação de Trabalho/Outra
181.	PICINATO, BEATRIZ A. ; Santos, VHF ; ZARAMELA, LIVIA S. ; Vencio, R. Z. N. ; KOIDE, T.. Comparative transcriptomics among archaea to search for circular RNAs. 2022. Apresentação de Trabalho/Conferência ou palestra
182.	PIMENTA-ZANON, M. H. ; de Souza, V.A ; HASHIMOTO, R. F. ; LOPES, F. M.. Biological Sequence Analysis Using Complex Networks and Entropy Maximization: A Case Study in SARS-CoV-2. Em: Swarnkar, T., Patnaik, S., Mitra, P., Misra, S., Mishra, M.. (Org.). Ambient Intelligence in Health Care. 1ed.Singapore. : Springer. 2022.v. 317, p. 459-469.
183.	POVEDA-CUEVAS, SERGIO A. ; ETCHEBEST, CATHERINE ; Barroso da Silva, Fernando L.. Self-association features of NS1 proteins from different flaviviruses. VIRUS RESEARCH. v. 318, p. 198838, 2022. Qualis: A3
184.	RIUS, FLÁVIA E. ; PAPAIZ, DEBORA D. ; AZEVEDO, HATYLAS F. Z. ; AYUB, ANA LUÍSA P. ; PESSOA, DIOGO O. ; OLIVEIRA, TIAGO F. ; LOUREIRO, ANA PAULA M. ; ANDRADE, FERNANDO ; Fujita, André ; REIS, EDUARDO M. ; MASON, CHRISTOPHER E. ; JASIULIONIS, MIRIAM G.. Genome-wide promoter methylation profiling in a cellular model of melanoma progression reveals markers of malignancy and metastasis that predict melanoma survival. Clinical Epigenetics. v. 14, p. 68, 2022. Qualis: A1
185.	ROCHA, BEATRIZ G. S. ; PICOLI, CAROLINE C. ; GONÇALVES, BRYAN O. P. ; SILVA, WALISON N. ; COSTA, ALINNE C. ; MORAES, MICHELE M. ; COSTA, PEDRO A. C. ; SANTOS, GABRYELLA S. P. ; ALMEIDA, MILLA R. ; SILVA, LUCIANA M. ; SINGH, YOUVIKA ; FALCHETTI, MARCELO ; GUARDIA, GABRIELA D. A. ; GUIMARÃES, PEDRO P. G. ; RUSSO, REMO C. ; RESENDE, RODRIGO R. ; PINTO, MAURO C. X. ; AMORIM, JAIME H. ; AZEVEDO, VASCO A. C. ; NAKAYA, H. I. ; et.al. Tissue-resident glial cells associate with tumoral vasculature and promote cancer progression. ANGIOGENESIS. v. 1, p. 1, 2022. Qualis: A1
186.	RODRIGUES, DAVI SILVA ; NASTRI, ANA CATHARINA S. ; MAGRI, MARCELLO M. ; OLIVEIRA, MAURA SALAROLI DE ; Sabino, Ester C. ; FIGUEIREDO, PEDRO H. M. F. ; LEVIN, ANNA S. ; FREIRE, MARISTELA P. ; HARIMA, LEILA S. ; NUNES, FÁTIMA L. S. ; Ferreira, João Eduardo ; BUSATTO, GERALDO ; BONFÁ, ELOISA ; UTIYAMA, EDIVALDO ; SEGURADO, ALUISIO ; PERONDI, BEATRIZ ; MORAIS, ANNA M. ; MONTAL, AMANDA ; FUSCO, SOLANGE ; FREGONESI, MARJORIE ; et.al. Predicting the outcome for COVID-19 patients by applying time series classification to electronic health records. BMC Medical Informatics and Decision Making. v. 22, p. 1, 2022. Qualis: A2
187.	RODRIGUES, TAMARA S ; SALINA, ANA CG ; DOS-SANTOS, DOUGLAS ; FORTES-ROCHA, MARLON ; FREITAS-FILHO, EDISMAURO G ; ALZAMORA-TERREL, DANIEL L ; CASTRO, ICARO MS ; FRAGA DA SILVA, THAIS FC ; DE LIMA, MIKHAEL HF ; NASCIMENTO, DANIELE C ; SILVA, CAMILA M ; TOLLER-KAWAHISA, JULIANA E ; BECERRA, AMANDA ; OLIVEIRA, SAMUEL ; CAETITÉ, DIEGO B ; ALMEIDA, LETICIA ; ISHIMOTO, ADRIENE Y ; LIMA, THAIS M ; MARTINS, RONALDO B ; NAKAYA, H. I. ; et.al. Efferocytosis of SARS-CoV-2-infected dying cells impairs macrophage anti-inflammatory functions and clearance of apoptotic cells. eLife. v. 11, p. 1, 2022. Qualis: A1
188.	ROMANO, G. E. ; SILVA-PEREIRA, T. T. ; MELO, F. M. ; ZERPA, M. C. S. ; BANARI, A. ; ZIMPEL, CRISTINA KRAEMER ; CAMARGO, N. C. S. ; GUIMARÃES, A. M. S.. Unraveling the metabolism of Mycobacterium caprae using comparative genomics. TUBERCULOSIS. v. 137, p. 1, 2022.Qualis: A3
189.	SANCHES, A. C. D. ; ALVES, LEVY B. ; GIULIATTI, S.. Aprendizagem de Máquinas na Identificação de Resíduos-Chave de Variantes na Interação das Proteínas ACE2 e TMPRSS2 com Spike do SARS-CoV2. Em: 30º Simpósio Internacional de Iniciação Científica e Tecnológica da USP - SIICUSP, 2022. 30º Simpósio Internacional de Iniciação Científica e Tecnológica da USP - SIICUSP, 2022.
190.	SANCHES, L. ; PATO, G. T. G. ; DA SILVA PELLEGRINA, DIOGO VIEIRA ; FERREIRA, J. E. ; Reis EM. LACEN: An R Package for Lncrna Functional Annotation Using Co-Expression Networks. Em: LI Reunião Anual da SBBq, 2022, 2022, Aguas de Lindoia, SP. LI Reunião Anual da SBBq, p. O-5, 2022.
191.	SANTINI, LUCIANE ; YOSHIDA, LEONARDO ; DE OLIVEIRA, KAIQUE DIAS ; LEMBKE, CAROLINA GIMILIANI ; DINIZ, AUGUSTO LIMA ; CANTELLI, GERALDO CESAR ; NISHIYAMA-JUNIOR, MILTON YUTAKA ; SOUZA, GLAUCIA MENDES. Antisense Transcription in Plants: A Systematic Review and an Update on cis-NATs of Sugarcane. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 23, p. 11603, 2022. Qualis: A2
192.	SANTOS, A. S. ; Giuliatti, Silvana ; BARRIOS-LEAL, D. Y. ; MANFRIN, M. H.. Molecular evolution of the GstD1 protein with alkaloid interaction in cactophilic Drosophila species. DROSOPHILA INFORMATION SERVICE. v. 105, p. 41-52, 2022.Qualis: C
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196.	SILVA, FABRICIO ALVES BARBOSA DA ; TUSZYNSKI, JACK ADAM ; NAKAYA, HELDER ; PALLER, CHANNING J.. Editorial: Big Data and machine learning in cancer theranostics. Frontiers in Big Data. v. 5, p. 1, 2022. Qualis: Não identificado (FRONTIERS IN BIG DATA)
197.	SILVA, JOSIANE FERNANDES ; BOLSONI, JULIANA A. ; COSTA, RAFAEL M. ; ALVES, JULIANO V. ; BRESSAN, ALECSANDER F. M. ; SILVA, LUIZ EDUARDO V. ; COSTA, TIAGO J. ; OLIVEIRA, ANTONIO E. R. ; MANZATO, CARLA P. ; AGUIAR, CARLOS A. ; FAZAN, RUBENS ; CUNHA, FERNANDO Q. ; Nakaya, Helder I. ; CARNEIRO, FERNANDO S. ; TOSTES, RITA C.. Aryl hydrocarbon receptor (AhR) activation contributes to high-fat diet-induced vascular dysfunction. BRITISH JOURNAL OF PHARMACOLOGY. v. 1, p. 1, 2022. Qualis: A1
198.	SILVA, MARCOS ARAÚJO CASTRO E ; FERRAZ, TIAGO ; Hünemeier, Tábita. A genomic perspective on South American human history. GENETICS AND MOLECULAR BIOLOGY (ONLINE VERSION). v. 45, p. 000-000, 2022. Qualis: A4
199.	SILVEIRA, GILBERT O. ; COELHO, HELENA S. ; AMARAL, MURILO S. ; Verjovski-Almeida, Sergio. Long non-coding RNAs as possible therapeutic targets in protozoa, and in Schistosoma and other helminths. PARASITOLOGY RESEARCH. v. 121, p. 1091-1115, 2022. Qualis: A1
200.	SOLER, JÚLIA MARIA PAVAN. Métodos de Enriquecimento e Particionamento na Estimação de Herdabilidade. 2022. Apresentação de Trabalho/Conferência ou palestra
201.	SOLER, JÚLIA MARIA PAVAN. A Estrutura Dual na Redução de Dimensionalidade: Aplicação em Dados Multiômicos. 2022. Apresentação de Trabalho/Conferência ou palestra
202.	SOLOMON, SUSHIL ; MENDES SOUZA, GLAUCIA ; ROSSETTO, RAFFAELLA ; AGUILAR-RIVERA, NOÉ. Innovation for Sustainability of the Sugar Agro-Industry. Sugar Tech. v. 24, p. 627-629, 2022. Qualis: A4
203.	SOUSA, A. B. ; VIEIRA, L. M. ; CAMILO, CAROLINE ; BRENTANI, HELENA. Avaliação da proteína 11BHSD2 como marcadorbiológico de exposição ao estresse gestacional. Em: 30º Simpósio Internacional de Iniciação Científica eTecnológica da USP - SIICUSP,, 2022, São Paulo. 30º Simpósio Internacional de Iniciação Científica eTecnológica da USP - SIICUSP, 2022.
204.	SOUZA, GLAUCIA M.; COSTA, A. O. ; GLORIA, C. M. F. ; MACHADO, G. V. ; Esteves, Heloisa Borges Bastos ; SANTOS, L. B. O. ; NOGUEIRA, L. A. H. ; JARDIM, M. A. ; OLIVEIRA, M. I. L. ; CANABARRO, N. I. ; HENRIQUES, R. M. ; ARAUJO, R. B. ; GODINHO, R. D. ; MACIEL FILHO, R. ; FERREIRA, T. V. B.. Implementation Agendas: Compare-and-Contrast Transport Biofuels Policies. IEA Bioenergy. 2022. Relatório Internacional
205.	SUN, S. S. ; ALVES, L. B. ; GIULIATTI, S.. Estudo do mecanismo de ativação e inativação da Rab7A por meio de simulações de dinâmica molecular. Em: 30º Simpósio Internacional de Iniciação Científica e Tecnológica da USP - SIICUSP, 2022. 30º Simpósio Internacional de Iniciação Científica e Tecnológica da USP - SIICUSP, 2022.
206.	SUPREM, A. ; VAIDYA, A. ; VENUGOPAL, A. ; Ferreira, João Eduardo ; Pu, Calton. EdnaML: A Declarative API and Framework for Reproducible Deep Learning. arxiv.org. 2022. Open access
207.	SUPREM, ABHIJIT ; SINGH, P. ; CHERKADI, S. ; VAIDYA, S. ; FERREIRA, J. E. ; Pu, Calton. ATEAM: Knowledge Integration from Federated Datasets for Vehicle Feature Extraction using Annotation Team of Experts. arxiv.org. 2022. Open access
208.	SUPREM, ABHIJIT ; VAIDYA, SANJYOT ; CHERKADI, SUMA ; SINGH, PURVA ; Ferreira, Joao Eduardo ; Pu, Calton. Constructive Interpretability with CoLabel: Corroborative Integration, Complementary Features, and Collaborative Learning. Em: 2022 IEEE 4th International Conference on Cognitive Machine Intelligence (CogMI), p. 74, 2022. Qualis: Não identificado (2022 IEEE 4th International Conference on Cognitive Machine Intelligence (CogMI))
209.	SUPREM, ABHIJIT ; VAIDYA, SANJYOT ; FERREIRA, J. E. ; Pu, Calton. Time-Aware Datasets are Adaptive Knowledgebases for the New Normal. arxiv.org. 2022. Open access
210.	TOLEDO, VICTOR HUGO CALEGARI DE ; FELTRIN, ARTHUR SANT'ANNA ; BARBOSA, ANDRÉ ROCHA ; TAHIRA, ANA CAROLINA ; BRENTANI, HELENA. Sex differences in gene regulatory networks during mid-gestational brain development. Frontiers in Human Neuroscience. v. 16, p. 955607, 2022. Qualis: A2
211.	UCEDA-CAMPOS, GUILLERMO ; FEITOSA-JUNIOR, OSEIAS R. ; SANTIAGO, CAIO R. N. ; PIERRY, PAULO M. ; ZAINI, PAULO A. ; DE SANTANA, WESLEY O. ; MARTINS-JUNIOR, JOAQUIM ; BARBOSA, DEIBS ; DIGIAMPIETRI, Luciano A. ; Setubal, João C. ; DA SILVA, ALINE M.. Comparative Genomics of Xylella fastidiosa Explores Candidate Host-Specificity Determinants and Expands the Known Repertoire of Mobile Genetic Elements and Immunity Systems. Microorganisms. v. 10, p. 914, 2022. Qualis: B1
212.	Van Sluys, M.-A.; MELLO, L. E. ; BOLZANI, V. S. ; ARTAXO, P. ; ANDRICOPULO, A. ; ZAGO, M. A.. FAPESP 60 anos: uma homenagem da ACIESP. Em: Adriano Andricopulo. (Org.). FAPESP 60 anos: a ciência no desenvolvimento nacional. 1ed.São Carlos. : Cubo. 2022.v. 1, p. 2-8.
213.	VERAS, FLÁVIO P. ; PUBLIO, GABRIEL A. ; MELO, BRUNO M. ; PRADO, DOUGLAS S. ; NORBIATO, THAINÁ ; CECILIO, NERRY T. ; HIROKI, CARLOS ; DAMASCENO, LUIS EDUARDO A. ; JUNG, REBECCA ; TOLLER-KAWAHISA, JULIANA E. ; MARTINS, TIMNA V. ; ASSUNÇÃO, STELLA F. ; LIMA, DIOGENES ; ALVES, MARCIA G. ; VIEIRA, GABRIEL V. ; TAVARES, LUCAS A. ; ALVES-REZENDE, ANA L.R. ; KARBACH, SUSANNE H. ; Nakaya, Helder I. ; CUNHA, THIAGO M. ; et.al. Pyruvate kinase M2 mediates IL-17 signaling in keratinocytes driving psoriatic skin inflammation. Cell Reports. v. 41, p. 111897, 2022. Qualis: A1
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2021

1.	ALARCÃO, FERNANDA SPEGGIORIN PEREIRA ; SHEPHARD, ELIZABETH ; FATORI, DANIEL ; AMÁVEL, RENATA ; CHIESA, ANNA ; FRACOLLI, LISLAINE ; MATIJASEVICH, ALICIA ; BRENTANI, HELENA ; NELSON, CHARLES A. ; LECKMAN, JAMES ; Miguel, Eurípedes Constantino ; POLANCZYK, GUILHERME V.. Promoting mother¿infant relationships and underlying neural correlates: Results from a randomized controlled trial of a home¿visiting program for adolescent mothers in Brazil. DEVELOPMENTAL SCIENCE. v. 24, p. 13113, 2021. Qualis: Não identificado (DEVELOPMENTAL SCIENCE)
2.	ALVES, C. C. ; DONADI, E. A. ; GIULIATTI, S.. In silico Analysis of HIF1-HRE Interaction at the -964G/A Single Nucleotide Polymorphism of the HLA-G Promoter Region. Em: XXXII Congresso Brasileiro de Genética Médica (CBGM 2021), 2021, Evento Online. Anais. Porto Alegre, RS: SBGM, v. XXXII, p. 1-1, 2021.
3.	ALVES, CINTHIA C. ; DONADI, EDUARDO A. ; Giuliatti, Silvana. Structural Characterization of the Interaction of Hypoxia Inducible Factor-1 with Its Hypoxia Responsive Element at the −964G > A Variation Site of the HLA-G Promoter Region. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. v. 22, p. 13046, 2021. Qualis: A2
4.	ALVES, JÚLIA A. ; PREVIATO-MELLO, MARISTELA ; BARROSO, KELLY C. M. ; Koide, Tie ; DA SILVA NETO, JOSÉ F.. The MarR family regulator OsbR controls oxidative stress response, anaerobic nitrate respiration, and biofilm formation in Chromobacterium violaceum. BMC MICROBIOLOGY. v. 21, p. 304, 2021. Qualis: A2
5.	ALVES, L. B. ; CASTILLO, W. O. ; GIULIATTI, S.. Virtual Screening de Pequenas Moléculas Naturais contra a RAB10 para o Tratamento da Doença de Alzheimer. Em: XXXII Congresso Brasileiro de Genética Médica (CBGM 2021), 2021, Evento Online. Anais. Porto Alegre, RS: SBGM, v. XXXII, p. 1-1, 2021.
6.	Alves, Levy Bueno ; CASTILLO, W. O. ; GIULIATTI, S.. Identification of potential HDAC3 inhibitors for the treatment of Alzheimer's disease. Em: 13th Internacional Congress of Pharmaceutical Sciences (CIFARP), 2021, Evento On-Line. Abstracts, v. 13, p. 1-1, 2021.
7.	ALZATE-MARIN, ANA LILIA ; RIVAS, PRISCILA MARLYS SÁ ; GALASCHI-TEIXEIRA, JULIANA S. ; BONIFÁCIO-ANACLETO, FERNANDO ; SILVA, CAROLINA COSTA ; SCHUSTER, IVAN ; NAZARENO, ALISON GONÇALVES ; Giuliatti, Silvana ; DA ROCHA FILHO, LÉO CORREIA ; GARÓFALO, CARLOS A. ; MARTINEZ, CARLOS A.. Warming and elevated CO2 induces changes in the reproductive dynamics of a tropical plant species. SCIENCE OF THE TOTAL ENVIRONMENT. v. 768, p. 1-11, 2021. Qualis: A1
8.	Amaral, Murilo Sena ; SANTOS, DAISY WOELLNER ; PEREIRA, ADRIANA S. A. ; TAHIRA, ANA CAROLINA ; MALVEZZI, JOÃO V. M. ; MIYASATO, PATRÍCIA AOKI ; FREITAS, RAFAELA DE PAULA ; KALIL, JORGE ; TJON KON FAT, ELISA M. ; DE DOOD, CLAUDIA J. ; CORSTJENS, PAUL L. A. M. ; VAN DAM, GOVERT J. ; NAKANO, ELIANA ; CASTRO, SIMONE DE OLIVEIRA ; MATTARAIA, VÂNIA GOMES DE MOURA ; AUGUSTO, RONALDO DE CARVALHO ; GRUNAU, CHRISTOPH ; Wilson, R. Alan ; Verjovski-Almeida, Sergio. Rhesus macaques self-curing from a schistosome infection can display complete immunity to challenge. Nature Communications. v. 12, p. 6181, 2021. Qualis: A1
9.	Amgarten, D. ; IHA, B. K. ; PIROUPO, C. M. ; DA SILVA, ALINE MARIA ; SETUBAL, J. C.. vHULK, a new tool for bacteriophage host prediction based on annotated genomic features and deep neural networks. BioRxiv. 2021. Artigo completo - preprint
10.	AOKI, MATEUS NÓBREGA ; DE OLIVEIRA COELHO, BRUNA ; GÓES, LUIZ GUSTAVO BENTIM ; MINOPRIO, PAOLA ; DURIGON, EDISON LUIZ ; MORELLO, LUIS GUSTAVO ; MARCHINI, FABRICIO KLERYNTON ; RIEDIGER, IRINA NATASSJA ; DO CARMO DEBUR, MARIA ; Nakaya, Helder I. ; BLANES, LUCAS. Colorimetric RT-LAMP SARS-CoV-2 diagnostic sensitivity relies on color interpretation and viral load. Scientific Reports. v. 11, p. 1, 2021. Qualis: A2
11.	ARIAS-CARRASCO, RAÚL ; GIDDALURU, JEEVAN ; CARDOZO, LUCAS E. ; MARTINS, FELIPE ; MARACAJA-COUTINHO, VINICIUS ; Nakaya, Helder I.. OUTBREAK: a user-friendly georeferencing online tool for disease surveillance. BIOLOGICAL RESEARCH (ONLINE). v. 54, p. 20, 2021. Qualis: A3
12.	ASSIS, RENATA A.B. ; VARANI, ALESSANDRO M. ; SAGAWA, CINTIA H.D. ; PATANÉ, JOSÉ S.L. ; SETUBAL, JOÃO CARLOS ; UCEDA-CAMPOS, GUILLERMO ; DA SILVA, ALINE MARIA ; ZAINI, PAULO A. ; Almeida, Nalvo F. ; MOREIRA, LEANDRO MARCIO ; DANDEKAR, ABHAYA M.. A comparative genomic analysis of Xanthomonas arboricola pv. juglandis strains reveal hallmarks of mobile genetic elements in the adaptation and accelerated evolution of virulence. GENOMICS. v. 113, p. 2513-2525, 2021. Qualis: A3
13.	AVILA, A. L. R. ; ALVES, L. B. ; GIULIATTI, S.. Análise Conformacional das Isoformas HLA-E *01:01 e *01:03 por Simulações de Dinâmica Molecular. Em: XXXII Congresso Brasileiro de Genética Médica (CBGM 2021), 2021, Evento Online. Anais. Porto Alegre, RS: SBGM, v. XXXII, p. 1-1, 2021.
14.	Barroso da Silva, Fernando L. Palestra convidada: Developing and applying fast constant-pH simulation methods in biological systems: from biomaterials to virus. 2021. Apresentação de Trabalho/Congresso
15.	Barroso da Silva, Fernando L. Palestra convidada: Developing and applying fast constant pH simulation methods in Biological systems: from biomaterials to virus. 2021. Apresentação de Trabalho/Outra
16.	Barroso da Silva, Fernando L. Palestra convidada: Bases moleculares para o entendimento de doenças inflamatórias e o desenvolvimento de novo. 2021. Apresentação de Trabalho/Seminário
17.	Barroso da Silva, Fernando L. Palestra convidada: Developing and applying bioinformatic methods with a biophysical approach: from food, biomaterials to virus and antibody design. 2021. Apresentação de Trabalho/Conferência ou palestra
18.	Barroso da Silva, Fernando L. Palestra convidada: Bioinformática estrutural para o desenho de anticorpos e peptídeos para vacinas. 2021. Apresentação de Trabalho/Simpósio
19.	Barroso da Silva, Fernando L. Palestra convidada: 1. Desarrollo y Aplicación de Métodos Bioinformáticos con Enfoque Biofísico: Desde Alimentos y Biomateriales hasta el Diseño de Anticuerpos Virales. 2021. Apresentação de Trabalho/Congresso
20.	Barroso da Silva, Fernando Luís. Palestra convidada: Developing and applying bioinformatic methods with a biophysical approach: from food, biomaterials to virus and antibody design. 2021. Apresentação de Trabalho/Conferência ou palestra
21.	BENEDÉ'UBIETO, RAQUEL ; ESTÉVEZ'VÁZQUEZ, OLGA ; GUO, FEIFEI ; CHEN, CHAOBO ; SINGH, YOUVIKA ; Nakaya, Helder I. ; GÓMEZ DEL MORAL, MANUEL ; LAMAS'PAZ, ARANTZA ; MORÁN, LAURA ; LÓPEZ'ALCÁNTARA, NURIA ; REISSING, JOHANNA ; BRUNS, TONY ; AVILA, MATÍAS A. ; SANTAMARÍA, EVA ; MAZARIEGOS, MARINA S. ; WOITOK, MARIUS MAXIMILIAN ; HAAS, UTE ; ZHENG, KANG ; JUÁREZ, IGNACIO ; MARTÍN'VILLA, JOSÉ MANUEL ; et.al. An Experimental DUAL Model of Advanced Liver Damage. Hepatology Communications. v. 1, p. 1, 2021. Qualis: C
22.	BOROVINA JOSKO, JOÃO MARCELO ; Ferreira, João Eduardo. Using visual-interactive properties to support data quality visual assessment on abstract and timeless data. Journal of Information and Data Management - JIDM. v. 12, p. 1, 2021. Qualis: B3
23.	BRAGA, LUCAS P. P. ; COUTINHO, FELIPE H. ; AMGARTEN, DEYVID E. ; KOT, WITOLD ; HANSEN, LARS ; Setubal, João C. ; PHILIPPOT, LAURENT. Novel virocell metabolic potential revealed in agricultural soils by virus-enriched soil metagenome analysis. Environmental Microbiology Reports. v. 13, p. 348-354, 2021. Qualis: A2
24.	BRAGA, LUCAS PALMA PEREZ ; PEREIRA, ROBERTA VERCIANO ; MARTINS, LAYLA FARAGE ; MOURA, LIVIA MARIA SILVA ; SANCHEZ, FABIO BELTRAME ; PATANÉ, JOSÉ SALVATORE LEISTER ; DA SILVA, ALINE MARIA ; SETUBAL, JOÃO CARLOS. Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions. BMC GENOMICS. v. 22, p. 652, 2021. Qualis: A2
25.	BRENTANI, H. P. Genotype, Environment and Phenotype in Psychiatric Disorders of Neurodevelopment. 2021. Apresentação de Trabalho/Congresso
26.	BUCKERIDGE, M. S. Mudanças Climáticas Globais. 2021. Apresentação de Trabalho/Conferência ou palestra
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38.	CHEN, Y. ; ANDRÉ, M. ; ADHIKARI, K. ; BLIN, M. ; BONFANTE, B. ; MENDOZA'REVILLA, J. ; FUENTES'GUAJARDO, M. ; PALMAL, S. ; CHACÓN'DUQUE, J.C. ; HURTADO, M. ; VILLEGAS, V. ; GRANJA, V. ; JARAMILLO, C. ; ARIAS, W. ; LOZANO, R.B. ; EVERARDO'MARTÍNEZ, P. ; GÓMEZ'VALDÉS, J. ; VILLAMIL'RAMÍREZ, H. ; DE CERQUEIRA, C.C.S. ; HÜNEMEIER, T. ; et.al. A GWAS identifies novel gene associations with facial skin wrinkling and mole count in Latin-Americans. BRITISH JOURNAL OF DERMATOLOGY. v. 00, p. bjd.20436, 2021. Qualis: A1
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41.	CORRÊA GIRON, CAROLINA ; LAAKSONEN, AATTO ; Barroso da Silva, Fernando L.. The Up state of the SARS-COV-2 Spike homotrimer favors an increased virulence for new variants. Frontiers in Medical Technology. v. 3, p. 29, 2021. Qualis: Não identificado (FRONTIERS IN MEDICAL TECHNOLOGY)
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50.	DE ARAÚJO, HUGO L. ; MARTINS, BIANCA P. ; VICENTE, ALEXANDRE M. ; LORENZETTI, ALAN P. R. ; Koide, Tie ; MARQUES, MARILIS V.. Cold Regulation of Genes Encoding Ion Transport Systems in the Oligotrophic Bacterium Caulobacter crescentus. MICROBIOLOGY SPECTRUM. v. 9, p. 10.1128, 2021. Qualis: A2
51.	DE ASSIS, LEONARDO VINÍCIUS MONTEIRO ; MORAES, MARIA NATHÁLIA ; MENDES, DAVI ; SILVA, MATHEUS MOLINA ; Menck, Carlos Frederico Martins ; CASTRUCCI, ANA MARIA DE LAURO. Loss of Melanopsin (OPN4) Leads to a Faster Cell Cycle Progression and Growth in Murine Melanocytes. Current Issues in Molecular Biology (Online). v. 43, p. 1436-1450, 2021. Qualis: A4
52.	DE AZAMBUJA RODRIGUES, PEDRO MENDES ; VALENTE, RICHARD HEMMI ; BRUNORO, GISELLE VILLA FLOR ; NAKAYA, HELDER TAKASHI IMOTO ; ARAÚJO-PEREIRA, MARIANA ; BOZZA, PATRICIA TORRES ; BOZZA, FERNANDO AUGUSTO ; TRUGILHO, MONIQUE RAMOS DE OLIVEIRA. Proteomics reveals disturbances in the immune response and energy metabolism of monocytes from patients with septic shock. Scientific Reports. v. 11, p. 1, 2021. Qualis: A2
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78.	GUIMARÃES, A. M. S. Palestra - Biossergurança em biotério NB3. 2021. Apresentação de Trabalho/Conferência ou palestra
79.	GUIMARÃES, A. M. S. Palestra 'Tuberculose e as peculiaridades no território brasileiro'. 2021. Apresentação de Trabalho/Conferência ou palestra
80.	GUIMARÃES, A. M. S. Palestra 'Insights from the Golden Syrian Hamster model of infection and disease by SARSCoV- 2'. 2021. Apresentação de Trabalho/Conferência ou palestra
81.	GUIMARÃES, A. M. S. Palestra - Insights from the Golden Syrian Hamster model of infection and disease by SARS-CoV-2. 2021. Apresentação de Trabalho/Conferência ou palestra
82.	GUZMAN, GROVER E. C. ; STADLER, PETER F. ; Fujita, André. Efficient Laplacian spectral density computations for networks with arbitrary degree distributions. NETWORK SCIENCE. v. 9, p. 312-327, 2021. Qualis: Não identificado (NETWORK SCIENCE)
83.	IBRAHIM, AMR GALAL ABD EL-RAHEEM ; VÊNCIO, RICARDO Z. N. ; LORENZETTI, ALAN P. R. ; Koide, Tie. Halobacterium salinarum and Haloferax volcanii Comparative Transcriptomics Reveals Conserved Transcriptional Processing Sites. Genes. v. 12, p. 1018, 2021. Qualis: A2
84.	IMOTO NAKAYA, HELDER. (Sociedade Brasileira de Inflamação) Palestrante convidado do Inflamma. 2021. Apresentação de Trabalho/Simpósio
85.	IMOTO NAKAYA, HELDER. (FAPESP workshop) Palestrante convidado do Repositório COVID-19 DataSharing/BR. 2021. Apresentação de Trabalho/Simpósio
86.	IMOTO NAKAYA, HELDER. (Einstein workshop) Palestrante convidado do grupo Big Data e AI. 2021. Apresentação de Trabalho/Simpósio
87.	IMOTO NAKAYA, HELDER. (APANAC @ Panamá) Keynote speaker do XVIII Congreso Nacional de Ciencia y Tecnología de la Asociación Panameña para el Avance de la Ciencia. 2021. Apresentação de Trabalho/Congresso
88.	IMOTO NAKAYA, HELDER. (Academia Brasileira de Ciências) Palestrante convidado do Webinários da ABC - Novas Fronteiras em Pesquisas Sobre Covid ? 19. 2021. Apresentação de Trabalho/Seminário
89.	IMOTO NAKAYA, HELDER. (UFMT @ MG) Palestrante convidado do evento Caminhos da Medicina no Século XXI. 2021. Apresentação de Trabalho/Simpósio
90.	IMOTO NAKAYA, HELDER. (III Seminário Luso-Brasileiro de divulgação científica) Palestrante convidado. 2021. Apresentação de Trabalho/Congresso
91.	IMOTO NAKAYA, HELDER. (Unioeste @ Paraná) Palestrante convidado do Programa de Mestrado em Ciências Farmacêuticas da Unioeste. 2021. Apresentação de Trabalho/Seminário
92.	IMOTO NAKAYA, HELDER. (UFRJ @ Rio) Palestrante convidado do programa de Pós-graduação do Instituto de Microbiologia Professor Paulo de Góes. 2021. Apresentação de Trabalho/Seminário
93.	IMOTO NAKAYA, HELDER. (Liga de Bioinformática) Palestrante convidado do Ciclo de Palestras da 2a Liga Brasileira de Bioinformática. 2021. Apresentação de Trabalho/Simpósio
94.	IMOTO NAKAYA, HELDER. (VSV-EBOPLUS Annual meeting @ Itália) Palestrante convidado. 2021. Apresentação de Trabalho/Simpósio
95.	IMOTO NAKAYA, HELDER. (Sociedade Brasileira de Imunologia) Palestrante convidado do congresso Immuno 2021. 2021. Apresentação de Trabalho/Congresso
96.	IMOTO NAKAYA, HELDER. (I Simpósio Internacional Einstein de Medicina de Precisão) Palestrante convidado. 2021. Apresentação de Trabalho/Simpósio
97.	JACOBI, PEDRO ROBERTO ; BUCKERIDGE, MARCOS ; RIBEIRO, WAGNER COSTA. Governança da água na Região Metropolitana de São Paulo - desafios à luz das mudanças climáticas. ESTUDOS AVANÇADOS (ONLINE). v. 35, p. 209-226, 2021. Qualis: A1
98.	JIMENEZ, LEANDRO ; CAMPOS CODO, ANA ; SAMPAIO, VANDERSON DE SOUZA ; OLIVEIRA, ANTONIO E. R. ; FERREIRA, LUCAS KAORU KOBO ; DAVANZO, GUSTAVO GASTÃO ; BRITO MONTEIRO, LAUAR DE ; VICTOR VIRGILIO-DA-SILVA, JOÃO ; BORBA, MAYLA GABRIELA SILVA ; FABIANO DE SOUZA, GABRIELA ; ZINI, NATHALIA ; ANDRADE GANDOLFI, FLORA DE ; MURARO, STÉFANIE PRIMON ; LUIZ PROENÇA-MODENA, JOSÉ ; VAL, FERNANDO ALMEIDA ; CARDOSO MELO, GISELY ; MONTEIRO, WUELTON MARCELO ; NOGUEIRA, MAURÍCIO LACERDA ; LACERDA, MARCUS VINÍCIUS GUIMARÃES ; NAKAYA, H. I. ; et.al. Acid pH Increases SARS-CoV-2 Infection and the Risk of Death by COVID-19. FRONTIERS IN MEDICINE. v. 8, p. 1, 2021. Qualis: C
99.	KAJITANI, GUSTAVO SATORU ; BRACE, LEAR ; TREVINO-VILLARREAL, JOSE HUMBERTO ; TROCHA, KASPAR ; MACARTHUR, MICHAEL ROBERT ; VOSE, SARAH ; VARGAS, DORATHY ; BRONSON, RODERICK ; MITCHELL, SARAH JAYNE ; Menck, Carlos Frederico Martins ; MITCHELL, JAMES ROBERT. Neurovascular dysfunction and neuroinflammation in a Cockayne syndrome mouse model. Aging-US. v. 13, p. 22710-22731, 2021. Qualis: Não identificado (AGING-US)
100.	KAWAMOTO, DIONE ; BORGES, RODRIGO ; RIBEIRO, RODOLFO ALVARENGA ; DE SOUZA, ROBSON FRANCISO ; AMADO, PÂMELA PONTES PENAS ; SARAIVA, LUCIANA ; HORLIANA, ANA CAROLINA RATTO TEMPESTINI ; FAVERI, MARCELO ; MAYER, MARCIA PINTO ALVES. Oral Dysbiosis in Severe Forms of Periodontitis Is Associated With Gut Dysbiosis and Correlated With Salivary Inflammatory Mediators: A Preliminary Study. Frontiers in Oral Health. v. 2, p. 722495, 2021. Qualis: Não identificado (FRONTIERS IN ORAL HEALTH)
101.	KEITA, HADY ; DOS SANTOS, CLEYDSON BRENO RODRIGUES ; RAMOS, MATHEUS MERCÊS ; PADILHA, ELIAS CARVALHO ; SERAFIM, RODOLFO BORTOLOZO ; CASTRO, ANDRES NAVARRETE ; AMADO, JESUS RAFAEL RODRIGUEZ ; DA SILVA, GABRIEL MONTEIRO ; FERREIRA, IRLON MACIEL ; Giuliatti, Silvana ; CARVALHO, JOSÉ CARLOS TAVARES. Assessment of the hypoglycemic effect of Bixin in alloxan-induced diabetic rats: in vivo and in silico studies. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS. v. 39, p. 1017-1028, 2021. Qualis: A3
102.	KOSTYGOV, A. Y. ; Alves, João M. P. ; YURCHENKO, V.. Symbioses Between Protists and Bacteria/Archaea, 2021. (Prefácio. 2021.
103.	KOSTYGOV, ALEXEI YU. ; Alves, João M. P. ; YURCHENKO, VYACHESLAV. Editorial: Symbioses Between Protists and Bacteria/Archaea. Frontiers in Microbiology. v. 12, p. 709184, 2021. Qualis: A1
104.	LADIN, ZACHARY S. ; FERRELL, BARBRA ; DUMS, JACOB T. ; MOORE, RYAN M. ; LEVIA, DELPHIS F. ; SHRIVER, W. GREGORY ; D?AMICO, VINCENT ; TRAMMELL, TARA L. E. ; SETUBAL, JOÃO CARLOS ; WOMMACK, K. ERIC. Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems. Scientific Reports. v. 11, p. 1629, 2021. Qualis: A2
105.	LEMES, CAMILA G. C. ; VILLA, MORGHANA M. ; FELESTRINO, ÉRICA B. ; PERUCCI, LUIZA O. ; ASSIS, RENATA A. B. ; CORDEIRO, ISABELLA F. ; FONSECA, NATASHA P. ; GUERRA, LARA C. C. ; CANESCHI, WASHINGTON L. ; MORAES, LAURO Â. G. ; DO CARMO, FLÁVIO F. ; KAMINO, LUCIANA H. Y. ; VALE, PEDRO N. C. ; GUIMA, SUZANA E. S. ; Setubal, João C. ; SALGADO, ANDRÉ A. R. ; Moreira, Leandro M.. 16S rRNA Gene Amplicon Sequencing Data of the Iron Quadrangle Ferruginous Caves (Brazil) Shows the Importance of Conserving This Singular and Threatened Geosystem. DIVERSITY. v. 13, p. 494, 2021. Qualis: A2
106.	LIMA, D. R. ; ZIMPEL, CRISTINA KRAEMER ; PATANE, J. S. L. ; SILVA-PEREIRA, T. T. ; ETGES, R. N. ; RODRIGUES, R. ; DAVILA, A. ; IKUTA, CÁSSIA YUMI ; FERREIRA NETO, J. S. ; ARAUJO, F. ; GUIMARÃES, A. M. S.. Genomic analysis of an outbreak of bovine tuberculosis in a man-made multi-host species system: a call for action on wildlife in Brazil. TRANSBOUNDARY AND EMERGING DISEASES. v. 1, p. 1-12, 2021.Qualis: A1
107.	LOCOSSELLI, GIULIANO MASELLI ; MIYAHARA, AUGUSTO AKIO LUCCHEZI ; CERQUEIRA, PRISCILLA ; BUCKERIDGE, MARCOS SILVEIRA. Climate drivers of tree fall on the streets of São Paulo, Brazil. TREES-STRUCTURE AND FUNCTION. v. 1, p. 1, 2021. Qualis: Não identificado (TREES-STRUCTURE AND FUNCTION)
108.	LORENZ, CAMILA ; ALVES, JOÃO M.P. ; FOSTER, PETER G. ; SUESDEK, LINCOLN ; SALLUM, MARIA ANICE M.. Phylogeny and temporal diversification of mosquitoes (Diptera: Culicidae) with an emphasis on the Neotropical fauna. SYSTEMATIC ENTOMOLOGY. v. 46, p. 798-811, 2021. Qualis: A1
109.	LÜSCHER-DIAS, THOMAZ ; CONCEIÇÃO, IZABELA MAMEDE ; SCHUCH, VIVIANE ; MARACAJA-COUTINHO, VINICIUS ; AMARAL, PAULO P. ; NAKAYA, HELDER I.. Long non-coding RNAs associated with infection and vaccine-induced immunity. Essays in Biochemistry. v. 1, p. 1, 2021. Qualis: A2
110.	MACIEIRA, BERNARDO PRETTI BECACICI ; LOCOSSELLI, GIULIANO MASELLI ; BUCKERIDGE, MARCOS SILVEIRA ; JARDIM, VINÍCIUS CARVALHO ; KROTTENTHALER, STEFAN ; ANHUF, DIETER ; HELLE, GERHARD ; CUZZUOL, GERALDO ROGÉRIO FAUSTINI ; CECCANTINI, Gregório. Will climate change shift carbon allocation and stem hydraulics? Insights on a systemic view of carbon- and water-related wood traits in an anysohydric tropical tree species (Hymenaea courbaril, Leguminosae). ECOLOGICAL INDICATORS. v. 128, p. 107798, 2021. Qualis: A1
111.	MAHADEVARAJU, SHARVANI ; FEAR, JUSTIN M. ; AKEJU, MIRIAM ; GALLETTA, BRIAN J. ; PINHEIRO, MARA M. L. S. ; AVELINO, CAMILA C. ; CABRAL-DE-MELLO, DIOGO C. ; CONLON, KATIE ; DELL?ORSO, STAFANIA ; DEMERE, ZELALEM ; MANSURIA, KUSH ; MENDONÇA, CAROLINA A. ; PALACIOS-GIMENEZ, OCTAVIO M. ; ROSS, ELI ; SAVERY, MAX ; YU, KEVIN ; SMITH, HAROLD E. ; SARTORELLI, VITTORIO ; YANG, HAIWANG ; VIBRANOVSKI, M. D. ; et.al. Dynamic sex chromosome expression in Drosophila male germ cells. Nature Communications. v. 12, p. 892, 2021. Qualis: A1
112.	MARQUES, R. B. ; CASTILLO, W. O. ; GIULIATTI, S.. Exploration of the in silico Activity of Alkaloids present in Caliphuria subedentata with Receptors ACHE, BCHE, GSK 3-BETA; and PPAR947. Em: XXXII Congresso Brasileiro de Genética Médica (CBGM 2021), 2021, Evento Online. Anais. Porto Alegre, RS: SBGM, v. XXXII, p. 1-1, 2021.
113.	MASI, LAUREANE N. ; LOTUFO, PAULO A. ; FERREIRA, FREDERICO M. ; RODRIGUES, ALICE C. ; SERDAN, TAMIRES D. A. ; SOUZA'SIQUEIRA, TALITA ; BRAGA, AÉCIO A. ; SALDARRIAGA, MAGDA E. G. ; ALBA'LOUREIRO, TATIANA C. ; BORGES, FERNANDA T. ; CURY, DIEGO P. ; HIRATA, MARIO H. ; GORJÃO, RENATA ; PITHON'CURI, TANIA C. ; LOTTENBERG, SIMÃO A. ; FEDELI, LIGIA M. G. ; NAKAYA, HELDER T. I. ; BENSENOR, ISABELA J. M. ; CURI, RUI ; HIRABARA, SANDRO M. ; et.al. Profiling plasma-extracellular vesicle proteins and microRNAs in diabetes onset in middle-aged male participants in the ELSA-Brasil study. PHYSIOLOGICAL REPORTS. v. 9, p. 1, 2021. Qualis: B1
114.	MEDINA-RODRÍGUEZ, ROSARIO ; BELTRÁN-CASTAÑÓN, CÉSAR ; HASHIMOTO, RONALDO FUMIO. An Approach to Growth Delimitation of Straight Line Segment Classifiers Based on a Minimum Bounding Box. Entropy. v. 23, p. 1541, 2021. Qualis: A4
115.	Mello, MP ; Picinato, BA ; de Arajuo, PHC ; de Sá, KSG ; Batista, BB ; Santos, RERS ; Zamboni, DS ; Osako, MK ; KOIDE, T. ; da Silva Neto, J. F.. Chromobacterium violaceum transcriptome during infection in macrophage and hepatocyte cell cultures. 2021. Apresentação de Trabalho/Congresso
116.	MELO, UIRÁ SOUTO ; BONNER, DEVON ; KENT LLOYD, KEVIN C. ; MOSHIRI, ALA ; WILLIS, BRANDON ; LANOUE, LOUISE ; BOWER, LYNETTE ; LEONARD, BRIAN C. ; MARTINS, DAVI JARDIM ; GOMES, FERNANDO ; DE SOUZA LEITE, FELIPE ; OLIVEIRA, DANYLLO ; KITAJIMA, JOÃO PAULO ; MONTEIRO, FABIOLA P. ; ZATZ, MAYANA ; Menck, Carlos Frederico Martins ; WHEELER, MATTHEW T. ; BERNSTEIN, JONATHAN A. ; DUMAS, KEVIN ; SPITERI, ELIZABETH ; et.al. Biallelic UBE4A loss-of-function variants cause intellectual disability and global developmental delay. GENETICS IN MEDICINE. v. 23, p. 661-668, 2021. Qualis: A1
117.	MIRANDA, RAQUEL P. ; TURRINI, PAULA C. G. ; BONADIO, D. ; ZERILLO, MARCELO M. ; BERSELLI, ARTHUR P. ; BINI, ANDRESSA P. ; CRESTE, SILVANA ; Van Sluys, M.-A.. What is it, in these Xanthomonas albilineans genomes, that makes a difference in the disease's varying intensities?. 2021. Apresentação de Trabalho/Simpósio
118.	MORENO, NATÁLIA C. ; LATANCIA, MARCELA T. ; OLIVEIRA, A. P. ; PADILHA, E. ; MARTINS, DAVI J. ; MUNFORD, V. ; MENCK, CARLOS F M. How do Translesion Polymerases Deal With Photodamage?. Em: R Improta and T Douki. (Org.). DNA photodamage: From light absortion to cellular responses and skin cancer. 1ed.London, UK. : Royal Society of Chemistry. 2021.v. 14, p. 307-338.
119.	MUSQUIARI, BRUNO ; CREVELIN, EDUARDO J. ; BERTONI, BIANCA W. ; FRANÇA, SUZELEI DE C. ; PEREIRA, ANA MARIA S. ; CASTELLO, ANA CAROLINA DEVIDES ; CASTILLO-ORDOÑEZ, WILLIAN O. ; Giuliatti, Silvana ; LOPES, ADRIANA A.. Precursor-directed Biosynthesis in Tabernaemontana catharinensis as a New Avenue for Alzheimer-s Disease-modifying Agents. PLANTA MEDICA (INTERNET). v. 87, p. 136-147, 2021. Qualis: A3
120.	NACHTIGALL, PEDRO G ; KASHIWABARA, ANDRE Y ; DURHAM, ALAN M. CodAn: predictive models for precise identification of coding regions in eukaryotic transcripts. BRIEFINGS IN BIOINFORMATICS. v. 22, p. 1-11, 2021. Qualis: A1
121.	Nakaya, Helder I. Hidden in plain sight: uncovering the role of CREB1 in HIV-1 vaccine-induced immunity. NATURE IMMUNOLOGY. v. 22, p. 1199-1200, 2021. Qualis: A1
122.	Nakaya, Helder I. Bioinformatics. 1 ed. Exon Publications, 2021. .
123.	NAKAYA, HELDER I. (XX Congresso @ SBBC) Palestrante convidado no XX Congress of the Brazilian Society for Cell Biology. 2021. Apresentação de Trabalho/Congresso
124.	NAKAYA, HELDER I. (VIII Curso de Férias em Imunologia @ ICB/USP) Palestrante convidado. 2021. Apresentação de Trabalho/Seminário
125.	NAKAYA, HELDER I. (VIII Curso de Verão em Imunoparasitologia @ CVIP/UFTM) Palestrante convidado. 'Bioinformática na Pandemia'. 2021. Apresentação de Trabalho/Seminário
126.	NAKAYA, HELDER I. (HCA Latin America) Palestrante convidado no 1st Human Cell Atlas Latin America Single Cell RNA-seq Data Analysis Workshop. 2021. Apresentação de Trabalho/Simpósio
127.	NAKAYA, HELDER I. (US Pharmacopeia - USP Scientific Affairs) Palestrante convidado. 2021. Apresentação de Trabalho/Seminário
128.	NAKAYA, HELDER I. (28º SIICUSP @ USP) Conferência em Carreiras Científicas. 2021. Apresentação de Trabalho/Simpósio
129.	NAKAYA, HELDER I. (UFMG @ BH) Palestrante convidado do Programa de Pós-Graduação em Fisiologia e Farmacologia. 2021. Apresentação de Trabalho/Seminário
130.	NAKAYA, HELDER I. (IQ @ USP) Convidado do Almoço com Ciência. 2021. Apresentação de Trabalho/Outra
131.	NAKAYA, HELDER I. (Pró-Reitoria de Pesquisa @ USP) Mesa redonda sobre o HCA e Chan Zuckerberg Initiative. 2021. Apresentação de Trabalho/Outra
132.	NAKAYA, HELDER I. (World Vaccine Congress @ Washington) Palestrante convidado. 2021. Apresentação de Trabalho/Congresso
133.	NAKAYA, HELDER I. (UFMG @ BH) Palestrante convidado do Pós Graduação em Biologia Celular - PPGBioCel. 2021. Apresentação de Trabalho/Seminário
134.	NAKAYA, HELDER I. (FCFRP @ USP) Palestrante convidado do Programa de Pós-Graduação em Biociências e Biotecnologia. 2021. Apresentação de Trabalho/Seminário
135.	NAKAYA, HELDER I. (ICB @ USP) Palestrante convidado dos Seminários do Departamento de Parasitologia. 2021. Apresentação de Trabalho/Seminário
136.	NAKAYA, HELDER I. (UNIFESP) Palestrante convidado dos Seminários em Ética em tempos de pandemia: urgência de pensar, Urgência de agir. 2021. Apresentação de Trabalho/Seminário
137.	NAKAYA, HELDER I. (Sociedade Brasileira de Imunologia) Palestrante convidado do Workshop 'A PANDEMIA COVID-19: O QUE OS CIENTISTAS BRASILEIROS ESTÃO FAZENDO'. 2021. Apresentação de Trabalho/Simpósio
138.	NAKAYA, HELDER TAKASHI IMOTO. (II Simpósio da Pós-Graduação em Biologia de Sistemas @ ICB USP) Palestrante convidado. 2021. Apresentação de Trabalho/Simpósio
139.	NAKAYA, HELDER TAKASHI IMOTO. Ciclo de conferência sobre a Covid-19 @ Consulado Geral da França em São Paulo. 2021. Apresentação de Trabalho/Conferência ou palestra
140.	NAKAYA, HELDER TAKASHI IMOTO. Diploma in Bioinformatics and Computational Biology @ Universidad de Chile. 2021. Apresentação de Trabalho/Seminário
141.	NAKAYA, HELDER TAKASHI IMOTO. 3a edição da Jornada de Iniciação Científica @ Faculdade Israelita de Ciências da Saúde Albert Einstein. 2021. Apresentação de Trabalho/Simpósio
142.	NAKAYA, HELDER TAKASHI IMOTO. VIII Seminário de Recursos Naturais @ UNIFEI. 2021. Apresentação de Trabalho/Seminário
143.	NAKAYA, HELDER TAKASHI IMOTO. II Simpósio Internacional de Ciências, Tecnologia e Inovação & XVII Jornada de Iniciação Científica @ Universidade Presbiteriana Mackenzie. 2021. Apresentação de Trabalho/Simpósio
144.	NAKAYA, HELDER TAKASHI IMOTO. Iberoamerican Consortium for the study of liver cirrhosis: A new avenue for therapeutics @ Ibero-American Universities Union UIU. 2021. Apresentação de Trabalho/Simpósio
145.	NAKAYA, HELDER TAKASHI IMOTO. Medtrop Play @ Sociedade Brasileira de Medicina Tropical. 2021. Apresentação de Trabalho/Congresso
146.	NAKAYA, HELDER TAKASHI IMOTO. Americas? Regional Scientific Workshop on Covid-19 @ Global Research Council. 2021. Apresentação de Trabalho/Simpósio
147.	NAKAYA, HELDER TAKASHI IMOTO. Encontro de Negócios em Inovação - Inova Ribeirão 2021 @ Ribeirão Preto. 2021. Apresentação de Trabalho/Simpósio
148.	NAKAYA, HELDER TAKASHI IMOTO. 53o Congresso Brasileiro de Farmacologia e Terapêutica Experimental @ SBFTE. 2021. Apresentação de Trabalho/Congresso
149.	NAKAYA, HELDER TAKASHI IMOTO. Reunión Anual de Sociedades de Biociencias 2021 @ Sociedad Argentina de Investigación Clínica. 2021. Apresentação de Trabalho/Congresso
150.	NAKAYA, HELDER TAKASHI IMOTO. Programa de pós-graduação em Imunologia @ UFU. 2021. Apresentação de Trabalho/Seminário
151.	NAKAYA, HELDER TAKASHI IMOTO. II Simpósio Internacional de Genética da PGGen @ UFRJ. 2021. Apresentação de Trabalho/Simpósio
152.	NAKAYA, HELDER TAKASHI IMOTO. Webinar 'Integrative Biology' no Varstation @ Varstation. 2021. Apresentação de Trabalho/Seminário
153.	NAKAYA, HELDER TAKASHI IMOTO. IV FACCHU Semana de Formação Acadêmica @ Instituto Federal Catarinense. 2021. Apresentação de Trabalho/Simpósio
154.	NAKAYA, HELDER TAKASHI IMOTO. Grupo de pesquisa e estudos (GENRU) @ UFPR. 2021. Apresentação de Trabalho/Seminário
155.	NASCIMENTO, DANIELE CARVALHO ; VIACAVA, PAULA RAMOS ; FERREIRA, RAPHAEL GOMES ; DAMACENO, MARINA ALVES ; PIÑEROS, ANNIE ROCÍO ; MELO, PAULO HENRIQUE ; DONATE, PAULA BARBIM ; TOLLER-KAWAHISA, JULIANA ESCHER ; ZOPPI, DANIEL ; VERAS, FLÁVIO PROTÁSIO ; PERES, RAPHAEL SANCHES ; MENEZES-SILVA, LUÍSA ; CAETITÉ, DIEGO ; OLIVEIRA, ANTONIO EDSON ROCHA ; CASTRO, ÍCARO MAIA SANTOS ; KAUFFENSTEIN, GILLES ; Nakaya, Helder Imoto ; BORGES, MARCOS CARVALHO ; ZAMBONI, DARIO SIMÕES ; FONSECA, DENISE MORAIS ; et.al. Sepsis expands a CD39+ plasmablast population that promotes immunosuppression via adenosine-mediated inhibition of macrophage antimicrobial activity. IMMUNITY. v. 54, p. 2024-2041.e8, 2021. Qualis: A1
156.	NAVARRO, BRUNO V ; FERNANDES, PEDRO A ; SANTOS-SILVA, DÉBORA ; FUJITA, ANDRÉ ; KINKER, GABRIELA S ; BUCKERIDGE, MARCOS S ; RIBEIRO-PAZ, EDSON D ; MORAES, CAROLINA BORSOI ; CÓRDOBA-MORENO, MARLINA O ; NAKAYA, HELDER I ; MUXEL, SANDRA M ; JARDIM, VINICIUS C ; MARKUS, REGINA P. Melatonin-Index as a biomarker for predicting the distribution of presymptomatic and asymptomatic SARS-CoV-2 carriers. Melatonin Research. v. 4, p. 189-205, 2021. Qualis: Não identificado (MELATONIN RESEARCH)
157.	NAVARRO, BRUNO V. ; DE OLIVEIRA, LEANDRO F. ; DE OLIVEIRA, LAUANA P. ; ELBL, PAULA ; MACEDO, AMANDA F. ; Buckeridge, Marcos S. ; FLOH, ENY I. S.. Starch turnover is stimulated by nitric oxide in embryogenic cultures of Araucaria angustifolia. PLANT CELL TISSUE AND ORGAN CULTURE. v. XX, p. online, 2021. Qualis: A1 (PLANT CELL, TISSUE AND ORGAN CULTURE)
158.	NEGRÃO, DJANIRA R. ; GRANDIS, Adriana ; Buckeridge, Marcos S. ; ROCHA, GEORGE J.M. ; LEAL, MANOEL REGIS L.V. ; Driemeier, Carlos. Inorganics in sugarcane bagasse and straw and their impacts for bioenergy and biorefining: A review. RENEWABLE & SUSTAINABLE ENERGY REVIEWS. v. 148, p. 111268, 2021. Qualis: A1
159.	NERI DE SOUZA REIS, VIVIANE ; TAHIRA, ANA CAROLINA ; DAGUANO GASTALDI, VINÍCIUS ; MARI, PAULA ; PORTOLESE, JOANA ; FEIO DOS SANTOS, ANA CECILIA ; LISBOA, BIANCA ; MARI, JAIR ; CAETANO, SHEILA C. ; BRUNONI, DÉCIO ; BORDINI, DANIELA ; SILVESTRE DE PAULA, CRISTIANE ; VÊNCIO, RICARDO Z. N. ; QUACKENBUSH, JOHN ; BRENTANI, HELENA. Environmental Influences Measured by Epigenetic Clock and Vulnerability Components at Birth Impact Clinical ASD Heterogeneity. Genes. v. 12, p. 1433, 2021. Qualis: A2
160.	NEVES NETO, P. S. ; CASTILLO, W. O. ; GIULIATTI, S. Immunoinformatics Approach for Multi-epitopes Vaccine Prediction against Alzheimer's Disease. Em: 13th Internacional Congress of Pharmaceutical Sciences (CIFARP), 2021, Evento On-Line. Abstracts, v. 13, p. 1-1, 2021.
161.	NEVES NETO, P. S. ; CASTILLO, W. O. ; GIULIATTI, S.. Abordagens de Bioinformática Estrutural e Imunoinformática no Desenho de Vacina Multiepitopos contra a Doença de Alzheimer. Em: 29º SIICUSP: Simpósio Internacional de Iniciação Científica da Universidade de São Paulo, 2021, Evento On-Line. Anais, v. 29, p. 1-2, 2021.
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